LOC110536845 (LOC106568061)


Basic Information

Item Value
gene id LOC110536845
gene name LOC106568061
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 30581313 ~ 30582677 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939501.1
ATGGAGAACGTGTCCTACGTGGCCCTGAGGCAGCCCATCGTGTTTGAGCTGGAGGGCTTTGAAGTGTCTCGGAGCCATGGTTACCCCCTGTTTGCCCTGGTCCTGGCCATCTACTTCCTGGTGCTGCTCGGGAACGTGGTTGTGATGGGTGTGATTGCAATAGATAAGACGCTACACAAGCCTATGTACGTGATGGTATGTAACCTGGCTGCCTGTGACCTGCTGGGAGGAACGGCTGTGATGACTCAGCTCATGGTCATCTTCCTGATGGGGGAGAAGAGGATTCCATACAACAGTGCCTATGCTCAGGCCATCTGTGTTCACACCTATGGTGCAGCTGTACAGACCATACTGTCAGCCATGGCCTATGACAGGCATGTCTACTGCAGCAACCGCTCCATCCTGAACCTGGCCTGTGTGCCCACCCCCATTAACGATATCTACGGTTTGTGCATGACTTGGATTCTCAGCAGCAGTTCCTTCCTCATCATCTTTTTCTGCTATTCCAAGATCCTGTCAGCCTGTCTGATGAGGAAGAGTGACAAGGGCAGTCGTAGTAAGGCCTTACAGACCTGCGCCTCTCACCTGGTCATCTACTTGATCTTCGAAATTGTCAGCCTCATCATTATCCTCAGTAACCGCTTCCCCCAGGTCCCAATGAACATCAAGAAGTTCTGCACTATCCTGATCTACATCGTTCCCCCTCTAATTAACCCTATCATCTATGGATTTGTCACTAAAGAGTTACGCACAAGCATTATAAAGCTGTTGAAAACACGGGTTGCACCCAAACTGTAA

Function

NR:

description
olfactory receptor 52D1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939501.1 True 798 mRNA 0.50 3 30581313 30582677

Neighbor

gene id symbol gene type direction distance location
LOC110537421 pedf coding upstream 48384 30527919 ~ 30532929 (+)
serpinf2 LOC106567902 coding upstream 53963 30522661 ~ 30527350 (+)
LOC110537416 LOC106567897 coding upstream 125690 30452246 ~ 30455623 (+)
LOC110537413 LOC106567901 coding upstream 140863 30438819 ~ 30440450 (+)
LOC100335038 LOC100335038 coding upstream 163600 30403738 ~ 30417713 (+)
LOC110536846 LOC106567904 coding downstream 19679 30602356 ~ 30603294 (+)
LOC110537424 LOC106567905 coding downstream 26358 30609035 ~ 30611409 (+)
LOC110537427 LOC106567909 coding downstream 93941 30676618 ~ 30692318 (+)
LOC110537430 LOC106567913 coding downstream 135423 30718100 ~ 30729787 (+)
LOC110536847 LOC106567912 coding downstream 155552 30738229 ~ 30739712 (+)
G1058814 NA non-coding upstream 3842 30577209 ~ 30577471 (+)
G1058803 LOC106567903 non-coding upstream 22840 30554376 ~ 30558473 (+)
G1058802 NA non-coding upstream 33248 30547351 ~ 30548065 (+)
G1058791 NA non-coding upstream 58760 30522312 ~ 30522553 (+)
G1058790 NA non-coding upstream 60437 30520535 ~ 30520876 (+)
G1058818 NA non-coding downstream 2853 30585530 ~ 30586069 (+)
G1058819 NA non-coding downstream 3470 30586147 ~ 30588126 (+)
G1058821 NA non-coding downstream 7437 30590114 ~ 30590796 (+)
G1058822 NA non-coding downstream 8245 30590922 ~ 30591804 (+)
G1058855 NA non-coding downstream 50509 30633186 ~ 30643145 (+)
G1058787 LOC106567901 other upstream 64423 30516081 ~ 30516890 (+)
G1058669 NA other upstream 323764 30257057 ~ 30257549 (+)
LOC110537400 LOC106603592 other upstream 509907 30067984 ~ 30071409 (+)
G1057271 NA other upstream 682838 29898196 ~ 29898475 (+)
LOC110537386 LOC106567871 other upstream 859528 29698677 ~ 29726867 (+)
LOC110537434 NA other downstream 265861 30848508 ~ 30879117 (+)
G1059091 NA other downstream 417550 31000227 ~ 31007066 (+)
G1059685 LOC106567926 other downstream 624952 31207629 ~ 31209357 (+)
G1060470 NA other downstream 1228385 31811062 ~ 31811347 (+)
G1062404 NA other downstream 2777057 33359734 ~ 33366249 (+)

Expression


Co-expression Network