LOC110537430 (LOC106567913)


Basic Information

Item Value
gene id LOC110537430
gene name LOC106567913
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 30718100 ~ 30729787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623467.2
TAGATTGAGAAATGTACAGTTCACAAATACATTTAGGATTTTGGGTCTCATATCCACTCTAAAAATAATTTCATCATGCTGAAGAGATGCCAGAAATTAAAAACTTCTAAACATCCAAATTGACTGGACTTCTGCTCAAAAGGATAATTTCACTCTCACCACGTTTGAAGCATTCGGTTTTCTGATTAGTTTCTAAACAAGGTACTGTATAATAATTGTTTATCTAAATAAAGTAATGCAACAGCAGATTACATGACTTCAATGCAATGTGGTCACACATATAGCAGCACATTATTGCATCTTTACTTCAAACTTGTATGACTTGTACACATAACATGTTGTATGAAAATGTTTCATTGTGATGCTCCATGTTTATGCTATGTTCCCCAAGGTTGTAGGTAGCCTATTCTGCAACAGTGCTATAACTGTCCTTCTCAGCTGATGGTTTTGCAGCAATACCCCCCACCAGCAGAGGGTGCTGAAGGCCCAGACACAGAGGAGCAGAATGATGATCACAGGCTGGGGGTCTATGGCTGGAGGAAGCGCTGCCTCTATCTGCTGGTGCTTCTCCTGCTCTCCACCCTGCTCGTCAACATTGCCCTGACAATCTGGATCCTCAGGGTCACCTGTCTCAACACAGAAGGAATGGGGCAGCTGAGAATAACATCAGATCGGGTGAGGCTTGATGGAGTGTCCgagttcctcttctctctctacgcCCAAGAGATACACTCCAAACAGGACACCTCCCTTCTTATCCACTCTGAGTCCCAAAATGTCACGCTCCAAGCCTGCAATGGGAAAGGAGGTGTGTTAGGTAGCCTTAACCTGGgTCCACAATCCATGGAAAGCGTAGGACAACATTTTGAGGTGATGACAAGCACTGGGAAATTGTTATTTTCTGCTGGTACAGAACAGGTAGTTGTTGGAGCGGATAAGCTAACCATTACAGGGTCTGATGGTGCTCAGTGTGAACATTCCATAGAGACATCCCTGGTCAGGGCAGAGCATTCCATGGACTTGAGGCTAGAGGCCCCCACCCGGTCCCTCCACCTGGATGCTCCAAAGGGAGTCCACATCAAAGCAGTGTCCGGCAGCGGCCAGGCCGTGTCCAGCATGGacatctctctactctctatgGACGGAGTGTTGATTCTGGATGCTGAGAGGGTGCAGCTGCCCAGGTTACCTctgagtggagaaggagagaaagggagtccTGGGGAGCAGttgtatgaagtgtgtgtgtgtcctgatgGAAGACTGTACCTGTCCAAAGctggtcacacctccacctgCCATGACAACAGTCACAATTGTTAAAAGACCACACTCTATTATCTTGAGATTTGTATTTACCTGGGTTCATCTTTATACATACATCATCATTGTGCAGTCAGTCGTGTCTTGCCTGAAAATTATGCAAAGTGCATATTAGAAAAATATGAAAGTTCAGAAAACttttaataaaacaacatttGTATATTTTAATAGTTTTTTTTTCACAGCTTCATATCTAAAAGATGTACATGCAAGGTGTTCTACTCTAGTGGCACCAACTATGTTACCTGTTTTGTCTGGGAATAGTTTCATTAATTATATTTGTGGATATTTTCATCCCTTTCACAGTAAACATGTTGGTTATGATGTTGTACAACCGGATAACATGTATGATACTATACGTCCTATATGATATTGTACGACCGCTATTCCATCCATAACGTAACCTATTGTAGggtaatatatcatactaaacGGAGGAAAACAAATGCATTTTCCAAATCATACGCATTGCTCTGAAGACAGGTTGATATTTTGAACATGCAGTGTACATATGTGATTGAAGATTGTTCAGGGGGAGCTTGATGCGCTAGTATCTGGCAGGCGGCAACAGTATTTGTTGAAAAAGTAGCCTACCCAATAGCCGTGTCTGCGAACTACACTTCTGACTGGGTATTTAGGAGTGGGGCGCGGTATTTTCTAGGAACCTGTTATGGAATAAACTCTGTTGCCTTATCTTGCCTATGGTAGCATCATATGTCATGTCCGCCAGATATCTACTTATATTACTGTACTTAATAGCTTCTTATGTCAATTAACATTGGACGTACTGTATCAGAAGATGGACCGTTTAATCGCATTATTATGAGCGTGGGTGGTATAAAAGTATTAGCTCATTGATTCCCATCCAGGTATTGGCAGACATTTTGAGACAATAGTTAACATTGAGTGGAAGCTAAAGAAGAT

Function

NR:

description
gamma-sarcoglycan-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623467.2 True 2247 mRNA 0.43 7 30718100 30729787

Neighbor

gene id symbol gene type direction distance location
LOC110537427 LOC106567909 coding upstream 25782 30676618 ~ 30692318 (+)
LOC110537424 LOC106567905 coding upstream 106691 30609035 ~ 30611409 (+)
LOC110536846 LOC106567904 coding upstream 114806 30602356 ~ 30603294 (+)
LOC110536845 LOC106568061 coding upstream 135423 30581313 ~ 30582677 (+)
LOC110537421 pedf coding upstream 185171 30527919 ~ 30532929 (+)
LOC110536847 LOC106567912 coding downstream 8442 30738229 ~ 30739712 (+)
LOC110537431 wrb coding downstream 44253 30774040 ~ 30788637 (+)
igsf5a igsf5 coding downstream 69112 30798899 ~ 30824358 (+)
LOC110537434 NA coding downstream 118721 30848508 ~ 30879117 (+)
LOC110537442 LOC106567929 coding downstream 516500 31246287 ~ 31303725 (+)
G1058900 NA non-coding upstream 5948 30711833 ~ 30712152 (+)
G1058883 NA non-coding upstream 43758 30674054 ~ 30674342 (+)
G1058869 NA non-coding upstream 57406 30658879 ~ 30660694 (+)
G1058855 NA non-coding upstream 74955 30633186 ~ 30643145 (+)
G1058822 NA non-coding upstream 126296 30590922 ~ 30591804 (+)
G1058905 NA non-coding downstream 7869 30737656 ~ 30771920 (+)
G1059541 NA non-coding downstream 334395 31064182 ~ 31064633 (+)
G1059543 NA non-coding downstream 334919 31064706 ~ 31065014 (+)
G1059549 NA non-coding downstream 341350 31071137 ~ 31071507 (+)
G1059552 NA non-coding downstream 344662 31074449 ~ 31074779 (+)
G1058787 LOC106567901 other upstream 201210 30516081 ~ 30516890 (+)
G1058669 NA other upstream 460551 30257057 ~ 30257549 (+)
LOC110537400 LOC106603592 other upstream 646694 30067984 ~ 30071409 (+)
G1057271 NA other upstream 819625 29898196 ~ 29898475 (+)
LOC110537386 LOC106567871 other upstream 996315 29698677 ~ 29726867 (+)
G1059091 NA other downstream 270440 31000227 ~ 31007066 (+)
G1059685 LOC106567926 other downstream 477842 31207629 ~ 31209357 (+)
G1060470 NA other downstream 1081275 31811062 ~ 31811347 (+)
G1062404 NA other downstream 2629947 33359734 ~ 33366249 (+)

Expression


Co-expression Network