XLOC_002918 (gabrr3a)


Basic Information

Item Value
gene id XLOC_002918
gene name gabrr3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35367722 ~ 35410518 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005402
GCGTCTCTTGGTTTCTCGCACAGGCCTTGGTCATGAACTTGGCTCTTGCGGCACTGAGGCTGATGTGCCTGGCCTGGCTGTGGCCCGTCGCATGGCTAAAAGGAAGCAACACGCAAAACCAGAGGAGGCACAAGGACGTCTATCTGGGCGAAAACACTAAGCACAAATTTGGAGGacGAATAGACTTTAAAACTAAGAAGTCTGACAGCACCAAATCTCTGCTGATTAAATCAGAGCAGCTCTTGAGAATCGAAGATCACGACTTCGCCATGAGGCCTGGTTTTGGAGGTTCGGCTATTCCAGTGGGCATCGATGTGCAAGTGGAGAGCATTGACGGCATTTCAGAGGTCAATATGGACTTCACCATGACACTGTACCTCAGGCATTACTGGCAGGACGACAGGCTGGCCTTCCCCTCCAGCAATAACAAGAGCCGAACATTTGACGCGCGGCTGGTGAAAAAGATCTGGGTGCCAGACGTCTTCTTTGTTCACTCCAAGCGTTCCTTCATTCATGACACGACCATGGAAAACATCATGCTCAGAGTCTTTCCAGACGGGAACATTCTTTACAGCGTCAGAATCACAGTGACGGCCCTCTGCTCCATGGACTTCAGCCGCTTCCCACTGGACACACAGAACTGCTCTCTGGAGCTGGAGAGCTACGCGTACAATGAGAACGACCTCATGCTCTATTGGAAGAATGGGAACGATTCATTAAGGACTGACGAGATTGCACTCTCGCAGTTTTTTATTGAAGAATTCCACCCTTCCTACGGGCTTGCCTTCTACAGCAGCACTGGCTGGTATAACAGGCTGTACATAAACTTCATCCTCAGGAGACACATATTCTTCTTCATGCTGCAGACATACTTTCCCACAATGCTAATGGTCATGCTCTCTTGGGTTTCCTTCTGGATTGACAGGAGAGCCGTGCCGGCCCGCGTCTCTCTAGGAATCACCACCGTGTTGACCATGTCCACCATCATCACGGGCGTGTCGGCCTCCATGCCGCAGGTGTCCTATGTGAAAGCGGTCGACATCTACCTGTGGGCCAGTTTCCTCTTCGTGTTCCTGTCGGTCATTGAATACGCTGCAGTGAATTACTTCACCACAGTGGAGGAGATGAAGAAACTCCAGAAAGGAAAGCTTCCAGCTTCCTACGACGCGACTCAGGCGATGGCGTACGACGGCTGTTTTCACGACGACATCGACGCGTCGCCGTTCCCCGAACTGCCCACCACGCCGAGCACCACGCGCACCATCCCGGCAAGAGCCTCATCCACCGAGCCGCCGCCGACCGAGGGCACGAGACTCTGGAGGAAGCGCTCGGTCGGCAAAAACATCCGCTTTATCATGAGCAACAGCTACATGATCGACTCCTACTCCAGAATTCTCTTTCCACTGGCCTATCTGCTCTTCAACATCATCTACTGGTGCATTTACTCCTGAAGAGGCgctgttgaagac
>TCONS_00005403
CTAATGCAAACTCACCAGATGCGCTCTCATGTCTTTTGTGGGCATAGGACTTCACCATGACACTGTACCTCAGGCATTACTGGCAGGACGACAGGCTGGCCTTCCCCTCCAGCAATAACAAGAGCCGAACATTTGACGCGCGGCTGGTGAAAAAGATCTGGGTGCCAGACGTCTTCTTTGTTCACTCCAAGCGTTCCTTCATTCATGACACGACCATGGAAAACATCATGCTCAGAGTCTTTCCAGACGGGAACATTCTTTACAGCGTCAGGTACCGCATCAAGCCTCTTTTCTGAAACCAGATGTTTTCACAAGAGCTGTAAGCTGGCAGTTTCCCGCGTCATCATGTGTTTCAGTCTGAAACCTCTTCATTTCTTCCAGGAATCACCACCGTGTTGACCATGTCCACCATCATCACGGGCGTGTCGGCCTCCATGCCGCAGGTGTCCTATGTGAAAGCGGTCGACATCTACCTGTGGGCCAGTTTCCTCTTCGTGTTCCTGTCGGTCATTGAATACGCTGCAGTGAATTACTTCACCACAGTGGAGGAGATGAAGAAACTCCAGAAAGGAAAGGTCAGGGTCACGCGCACGTCAGAGATCAGTTATATTTACTCAC

Function

symbol description
gabrr3a Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in eye. Orthologous to human GABRR3 (gamma-aminobutyric acid type A receptor subunit rho3).

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:1902711 GABA-A receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004890 GABA-A receptor activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080722-20 Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in eye. Orthologous to human GABRR3 (gamma-aminobutyric acid type A receptor subunit rho3).

Ensembl:

ensembl_id ENSDARG00000027153

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005402 False 1469 mRNA 0.52 9 35367722 35410518
TCONS_00005403 True 618 processed_transcript 0.50 2 35369837 35387242

Neighbor

gene id symbol gene type direction distance location
XLOC_002917 NA coding downstream 46085 35312892 ~ 35321637 (-)
XLOC_002916 prr11 coding downstream 110161 35250205 ~ 35257561 (-)
XLOC_002915 smg8 coding downstream 119220 35238488 ~ 35248502 (-)
XLOC_002914 ypel2a coding downstream 130773 35201850 ~ 35236949 (-)
XLOC_002913 pom121 coding downstream 181412 35169644 ~ 35186310 (-)
XLOC_002919 NA coding upstream 18986 35429504 ~ 35431655 (-)
XLOC_002920 si:ch211-244c8.4 coding upstream 127456 35537974 ~ 35542071 (-)
XLOC_002921 smg6 coding upstream 174129 35584647 ~ 35613752 (-)
XLOC_002922 BX663516.3 coding upstream 209815 35620333 ~ 35620449 (-)
XLOC_002923 NA coding upstream 240066 35650584 ~ 35654680 (-)
XLOC_002912 BX465844.1 non-coding downstream 203431 35160010 ~ 35164291 (-)
XLOC_002909 NA non-coding downstream 309278 35054281 ~ 35058444 (-)
XLOC_002906 CT573139.2 non-coding downstream 408544 34951060 ~ 34959178 (-)
XLOC_002902 BX510654.1 non-coding downstream 1040328 34327262 ~ 34327394 (-)
XLOC_002925 NA non-coding upstream 401234 35811752 ~ 36093533 (-)
XLOC_002926 BX088524.4 non-coding upstream 752661 36163179 ~ 36163294 (-)

Expression


Co-expression Network