LOC110537432


Basic Information

Item Value
gene id LOC110537432
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 30738076 ~ 30773877 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623471.2
AGAGTGGTTTGTCCGTCAGGTTAGCGCTGTAATGAATTGAATAGGGGGGGTGGAATCCAATCCGGTTTGAGCTAGTTTTGTTCCAATGGAACATTAACGTCTCGCTACGCTGTAATAGAACGTACTGTTTGAATCTTATACCGAACAGTATTTTTCTTGCTCCGTTTTGGAACATTGCCCTCTTTTTTTCTTTTAACAAATACGCAAAACAGCCATGCCTAAAAGGAGCAAAGCAAACGCTGATGCTGAGGCAGCAGAGCCCAAGAGGAGATCTGAGAGATTGGTAAATAAACCAGCCCCTCCAAAGGCAGAGCCCAAGCCAAAGaaggaGAAGGCAGTACCCAAGCCCAAGAAGGCTAAGGAGGTGAAGAAGGCTGCACCTGAGGAGAAGGAGGCGCCTGCAGAGAATGGCGAAGCCAAAGCTGAGGAAGAGGAACCAGCCACAGAAGAACCTGAACAGAAAGAAGATGCGGCAGAATAACATCTCTCAAACCACATCTTTTATCACTGCTCCCTATTCCTCTTTCTTGTACAATTCAGGGGAATATTTTTATTGACTATTTTCTAAATGCAAGTTTTTTAGTAGTTTGATTGTAGAAACACATTTTTTTATGGAACAAATACATTTGGAGACGGATTTCATCACATCCCACATTTTTACATCTCCAGAACAATTACGGTTATtgtaaatgtcaaatgtttttatttttgctGTGGGGAAGGGGTGGGAATGGGCCAGGTTGCTGCATCAAGAACATGCAAGCATGTTGTTTACAGGATCCGGTCAAAACAGAGAGCTTGCCTGAGAGACTAACATTCCATAGGCTATATGAGGGACGGTATTTGTAACCTGTATTGTGTGGTGGGGATGAATTCCTCAAGGGGCAACACAGTTTTATTGTTTATAATGAGAAATGTTTTAGAATGTTGTAAGCTGTGTTCCGTATGTTAACTATTGTACTCATGCCATTTTTTTTCTTAACCATTCTGCTTAATAAACCTATTCCCTAGCACTGGAGTTCCTCCCTATCAGGCCTGTGCATTGCGTGTAATTGGTTTTGTCTCTGTTCTGTGATAGCATTGCAATAAATGTGTACAGCTGCTGTTTAAAAGGGTTTTCAAACTTTCTATATGCAGTGTTTAATGGTACATTGTAAATGGAATTCTTTGTTCTTAGCCAAGCTAATGACATAAGTGTGAAACATACTGTTGACTATGGTTCCTTTTGATGCTGAGAAACTGTACATCCACTTGAGCTGTCAAATACACAAACCAGCAATATTCATGTGGGTTTTAGGTATCAAGTACAAGTGTACAGTTCTTGTATTCTTTGTTTATAGATGTATCTGTGTCATGATTGGTATAAACAAACCAATAAAAATGTGGTTGTAATCGTT
>TU1206894
GCTAGTTTTGTTCCAATGGAACATTAACGTCTCGCTACGCTGTAATAGAACGTACTGTTTGAATCTTATACCGAACAGTATTTTTCTTGCTCCGTTTTGGAACATTGCCCTCTTTTTTTCTTTTAACAAATACGCAAAACAGCCATGCCTAAAAGGAGCAAAGCAAACGCTGATGCTGAGGCAGCAGAGCCCAAGAGGAGATCTGAGAGATTGGTAAATAAACCAGCCCCTCCAAAGGCAGAGCCCAAGCCAAAGaaggaGAAGGCAGTACCCAAGCCCAAGAAGGCTAAGGAGGTGAAGAAGGCTGCACCTGAGGAGAAGGAGGCGCCTGCAGAGAATGGCGAAGCCAAAGCTGAGGAAGAGGAACCAGCCACAGAAGAACCTGAACAGAAAGAAGATGCGGCAGAATAACATCTCTCAAACCACATCTTTTATCACTGCTCCCTATTCCTCTTTCTTGTACAATTCAGGGGAATATTTTTATTGACTATTTTCTAAATGCAAGTTTTTTAGTAGTTTGATTGTAGAAACACATTTTTTTATGGAACAAATACATTTGGAGACGGATTTCATCACATCCCACATTTTTACATCTCCAGAACAATTACGGTTATtgtaaatgtcaaatgtttttatttttgctGTGGGGAAGGGGTGGGAATGGGCCAGGTTGCTGCATCAAGAACATGCAAGCATGTTGTTTACAGGATCCGGTCAAAACAGAGAGCTTGCCTGAGAGACTAACATTCCATAGGCTATATGAGGGACGGTATTTGTAACCTGTATTGTGTGGTGGGGATGAATTCCTCAAGGGGCAACACAGTTTTATTGTTTATAATGAGAAATGTTTTAGAATGTTGTAAGCTGTGTTCCGTATGTTAACTATTGTACTCATGCCATTTTTTTTCTTAACCATTCTGCTTAATAAACCTATTCCCTAGCACTGGAGTTCCTCCCTATCAGGCCTGTGCATTGCGTGTAATTGGTTTTGTCTCTGTTCTGTGATAGCATTGCAATAAATGTGTACAGCTGCTGTTTAAAAGGGTTTTCAAACTTTCTATATGCAGTGTTTAATGGTACATTGTAAATGGAATTCTTTGTTCTTAGCCAAGCTAATGACATAAGTGTGAAACATACTGTTGACTATGGTTCCTTTTGATGCTGAGAAACTGTACATCCACTTGAGCTGTCAAATACACAAACCAGCAATATTCATGTGGGTTTTAGGTATCAAGTACAAGTGTACAGTTCTTGTATTCTTTGTTTATAGATGTATCTGTGTCATGATTGGTATAAACAAACCAATAAAAATGTGGTTGTAATCgttaaaaaaaaaaaa

Function

NR:

description
PREDICTED: non-histone chromosomal protein HMG-14-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623471.2 False 1397 mRNA 0.40 6 30770164 30773877
TU1206894 True 1339 TUCP 0.39 7 30738076 30773807

Neighbor

gene id symbol gene type direction distance location
mipepb LOC106567911 coding downstream 14724 30739765 ~ 30755440 (-)
LOC110537426 NA coding downstream 98039 30648676 ~ 30672125 (-)
LOC110537425 LOC106567906 coding downstream 132126 30633836 ~ 30638038 (-)
LOC110537422 LOC106567903 coding downstream 206409 30537787 ~ 30563755 (-)
LOC110537420 LOC106567901 coding downstream 249330 30494121 ~ 30520834 (-)
LOC110537435 dscam coding upstream 121185 30895062 ~ 31031788 (-)
LOC110537436 tmprss2 coding upstream 300984 31074861 ~ 31100847 (-)
mmp30 LOC106567923 coding upstream 339780 31113657 ~ 31122131 (-)
mmp mmp coding upstream 369198 31143075 ~ 31150780 (-)
LOC118937817 NA coding upstream 386735 31160612 ~ 31176005 (-)
G1059352 NA non-coding downstream 25358 30743829 ~ 30744806 (-)
G1059331 NA non-coding downstream 62381 30707570 ~ 30707783 (-)
G1059290 NA non-coding downstream 69658 30692953 ~ 30700506 (-)
G1059288 NA non-coding downstream 69766 30691067 ~ 30700398 (-)
G1059287 NA non-coding downstream 74830 30693176 ~ 30695334 (-)
G1059388 igsf5 non-coding upstream 43094 30816971 ~ 30861437 (-)
G1059505 NA non-coding upstream 226280 31000157 ~ 31006587 (-)
G1059546 NA non-coding upstream 292591 31066468 ~ 31066694 (-)
G1059613 NA non-coding upstream 299615 31073492 ~ 31073754 (-)
G1060051 NA non-coding upstream 442238 31216115 ~ 31216331 (-)
LOC110537417 rnasek other downstream 317951 30447386 ~ 30452456 (-)
G1059183 NA other downstream 434908 30334827 ~ 30335256 (-)
LOC110537405 NA other downstream 816510 29951555 ~ 29960420 (-)
G1058320 NA other downstream 966548 29800853 ~ 29803616 (-)
G1059610 NA other upstream 293708 31067585 ~ 31070860 (-)
G1061331 NA other upstream 1217333 31991210 ~ 31992555 (-)
G1062051 NA other upstream 2265608 33039485 ~ 33086066 (-)
G1062603 NA other upstream 2739048 33512925 ~ 33513375 (-)
med13a med13 other upstream 2743888 33419083 ~ 33532690 (-)
LOC110536844 LOC106603575 coding downstream 258405 30476900 ~ 30479671 (-)
G1059318 NA non-coding downstream 65335 30672491 ~ 30672741 (-)

Expression


Co-expression Network