LOC110537436 (tmprss2)


Basic Information

Item Value
gene id LOC110537436
gene name tmprss2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 31074861 ~ 31100847 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623484.2
AGACATTTCAAGGGCCTGTTGTGTGTAGCTATCCTCTCAAGAACCTGGTCATAATGCCCTGCCTGGTTATTGATTAACAGCCAAGAAGACTTAACATGTCCAGAGAACCCGGGGCCTTTGTATACACAGTCAGACTGTTCACACAAACTAAGGTGTGGTCATGGCTGTTTAGTGCAAGGAGTAAAGAGAGAATGGACtgagttagagggagagagaataagaaGAAGGGACGTCAAATCAGTGTTCAAAAGCAACAGTTGAACTAATCCAAGATTTGATAATATCTTATCGGAGCATTGAAAGTGGTGTCGACATGAACAATAACCAGACACCAGGTCCCCAGTATGTGAACTATGGATTTCAAGAGGGGGCCGGAACTGAAGGAAGACCCCCTGCAAATGCTTCTGCCCCGCAGATTCCCAACGTCCCCCTCTCTGTTTACCCTCAGTACACCCCTCAGACCATCAACACCCACCACACGTTCACCCCTGGATTACCACATCCTGTCCCAGTACGAAAAGTGGTGAAGAAAAGTCGCTGTAAATGTATTGTGGCCTTAATTCTAAGTGTCTTAGTTCTCCTTGGGGCAGCTGGAGCGTTGGTTTGGTATTTCTtgtcctaccagtgtgtgttggggaggTCCTGTAGCGAGGGAGGTGTGTGTCTGAATGCCTCTCAGTGGTGTGATGGCATCAGAGACTGTCCAGGAGGAGAAGATGAGTCACAGTGCCTACGCCTTCATGGGTCTGGTTTTGTGCTGCAGAGTTACTCATCAGACAGTCAGATGTGGAAGCCAGTGTGTGCTGATAACTGGAATGACAACATTGGCAGGGCCACCTGTCAGCAGATTGGATACAGCAGTGGGTCCTATGTTCGGTTCTCACAAAGAAACCCAGGCTCCTTGGCCGTTGATGGCTATATGAAGCTGTCAGGCTTTGACCCTCATTCCCTTCTACAGGGGCAGCTAACCAGCAGTCCCTACTGCTCATTACAAGCAGTCTCCCTGCAGTGCATTGACTGTGGTGTGAGTGGGCGCGAGCCCACTAGGAGCCGTATTGTAGGAGGCGACATAGCGGTGAGCGGGGCTTGGCCCTGGCAAGTCAGTCTGCACTCCAACTACCAGCACCAGTGTGGAGGCTCCATCATCAGCCCTGAGTGGATCATCACTGCAGCCCACTGTGTAGAAACGCTatcacagcccagtcagtggACGGTGTATGCGGGCTATTTGATCCAGATACAGATGGCTTATGCCACTGGCAATTCAGTGAGACGCATCATCTCTCACGAAAAATacgacaagcagactaaggataATGACATCGCTCTTATGAAACTCAACACACCCCTCACTATGTCAGataaGGTGAGACCAGTGTGTCTGCCCAACTTCGGAGTGAATCTGACTCCCCAGCGAGAAGCCTGGATCTCTGGATGGGGGTCCATTAGGAGTGGTGGGTTGGTGTCAGAAAACCTGCGTCAGGCCCGGATCACCATGTACAGCAGACACACATGTAACGCACAGTTGGTGTACAATGGACGTGTCACCACCTCTATGATCTGTGCTGGGACACTGGCAGGAGGAGTGGACTCATGTCAGGGGGATAGTGGAGGACCCATGGTGGCCAAGGAGGGTTCATTATGGTGGCTGGTAGGGGACACTAGCTGGGGTATAGGTTGTGCTCTGAAGAACAAGCCAGGAATCTACGGCAATGTCTCCCACTTCCTTCCCTGGATATATGAACAAATGCAGAAAAATTAATGGAGATACCAATGATGATGGCCTCTTTTGCTTATCAAATTCACCTGTCTGAAATGTGGCTTCTGAATAAATGACACATACACTGCTTTCAGGGATGATTTTTGGTGCCTGTTGACTtataggcaaagggtggctacattgaagaatctaaaatatattttgattgtttaacacttttttggttactacatgattccatatgagttatttcatagttttgatgtcttcact
>XM_021623482.2
GTGTGTAGACATTTCAAGGGCCTGTTGTGTGTAGCTATCCTCTCAAGAACCTGGTCATAATGCCCTGCCTGGTTATTGATTAACAGCCAAGAAGACTTAACATGTCCAGAGAACCCGGGGCCTTTGTATACACAACACCAGGTCCCCAGTATGTGAACTATGGATTTCAAGAGGGGGCCGGAACTGAAGGAAGACCCCCTGCAAATGCTTCTGCCCCGCAGATTCCCAACGTCCCCCTCTCTGTTTACCCTCAGTACACCCCTCAGACCATCAACACCCACCACACGTTCACCCCTGGATTACCACATCCTGTCCCAGTACGAAAAGTGGTGAAGAAAAGTCGCTGTAAATGTATTGTGGCCTTAATTCTAAGTGTCTTAGTTCTCCTTGGGGCAGCTGGAGCGTTGGTTTGGTATTTCTtgtcctaccagtgtgtgttggggaggTCCTGTAGCGAGGGAGGTGTGTGTCTGAATGCCTCTCAGTGGTGTGATGGCATCAGAGACTGTCCAGGAGGAGAAGATGAGTCACAGTGCCTACGCCTTCATGGGTCTGGTTTTGTGCTGCAGAGTTACTCATCAGACAGTCAGATGTGGAAGCCAGTGTGTGCTGATAACTGGAATGACAACATTGGCAGGGCCACCTGTCAGCAGATTGGATACAGCAGTGGGTCCTATGTTCGGTTCTCACAAAGAAACCCAGGCTCCTTGGCCGTTGATGGCTATATGAAGCTGTCAGGCTTTGACCCTCATTCCCTTCTACAGGGGCAGCTAACCAGCAGTCCCTACTGCTCATTACAAGCAGTCTCCCTGCAGTGCATTGACTGTGGTGTGAGTGGGCGCGAGCCCACTAGGAGCCGTATTGTAGGAGGCGACATAGCGGTGAGCGGGGCTTGGCCCTGGCAAGTCAGTCTGCACTCCAACTACCAGCACCAGTGTGGAGGCTCCATCATCAGCCCTGAGTGGATCATCACTGCAGCCCACTGTGTAGAAACGCTatcacagcccagtcagtggACGGTGTATGCGGGCTATTTGATCCAGATACAGATGGCTTATGCCACTGGCAATTCAGTGAGACGCATCATCTCTCACGAAAAATacgacaagcagactaaggataATGACATCGCTCTTATGAAACTCAACACACCCCTCACTATGTCAGataaGGTGAGACCAGTGTGTCTGCCCAACTTCGGAGTGAATCTGACTCCCCAGCGAGAAGCCTGGATCTCTGGATGGGGGTCCATTAGGAGTGGTGGGTTGGTGTCAGAAAACCTGCGTCAGGCCCGGATCACCATGTACAGCAGACACACATGTAACGCACAGTTGGTGTACAATGGACGTGTCACCACCTCTATGATCTGTGCTGGGACACTGGCAGGAGGAGTGGACTCATGTCAGGGGGATAGTGGAGGACCCATGGTGGCCAAGGAGGGTTCATTATGGTGGCTGGTAGGGGACACTAGCTGGGGTATAGGTTGTGCTCTGAAGAACAAGCCAGGAATCTACGGCAATGTCTCCCACTTCCTTCCCTGGATATATGAACAAATGCAGAAAAATTAATGGAGATACCAATGATGATGGCCTCTTTTGCTTATCAAATTCACCTGTCTGAAATGTGGCTTCTGAATAAATGACACATACACTGCTTTCAGGGATGATTTTTGGTGCCTGTTGACTtataggcaaagggtggctacattgaagaatctaaaatatattttgattgtttaacacttttttggttactacatgattccatatgagttatttcatagttttgatgtcttcact
>XM_021623483.2
AGACATTTCAAGGGCCTGTTGTGTGTAGCTATCCTCTCAAGAACCTGGTCATAATGCCCTGCCTGGTTATTGATTAACAGCCAAGAAGACTTAACATGTCCAGAGAACCCGGGGCCTTTGTATACACAGTCAGACTGTTCACACAAACTAAGGTGTGGTCATGGCTGTTTAGTGCAAGGAGTAAAGAGAGAATGGACtgagttagagggagagagaataagaaGAAGGGACGTCAAATCAGTGTTCAAAAGCAACAGTTGAACTAATCCAAGGTAAATCTGGTAAAGGTAAAAGATTTGATAATATCTTATCGGAGCATTGAAAGTGGTGTCGACATGAACAATAACCAGACACCAGGTCCCCAGTATGTGAACTATGGATTTCAAGAGGGGGCCGGAACTGAAGGAAGACCCCCTGCAAATGCTTCTGCCCCGCAGATTCCCAACGTCCCCCTCTCTGTTTACCCTCAGTACACCCCTCAGACCATCAACACCCACCACACGTTCACCCCTGGATTACCACATCCTGTCCCAGTACGAAAAGTGGTGAAGAAAAGTCGCTGTAAATGTATTGTGGCCTTAATTCTAAGTGTCTTAGTTCTCCTTGGGGCAGCTGGAGCGTTGGTTTGGTATTTCTtgtcctaccagtgtgtgttggggaggTCCTGTAGCGAGGGAGGTGTGTGTCTGAATGCCTCTCAGTGGTGTGATGGCATCAGAGACTGTCCAGGAGGAGAAGATGAGTCACAGTGCCTACGCCTTCATGGGTCTGGTTTTGTGCTGCAGAGTTACTCATCAGACAGTCAGATGTGGAAGCCAGTGTGTGCTGATAACTGGAATGACAACATTGGCAGGGCCACCTGTCAGCAGATTGGATACAGCAGTGGGTCCTATGTTCGGTTCTCACAAAGAAACCCAGGCTCCTTGGCCGTTGATGGCTATATGAAGCTGTCAGGCTTTGACCCTCATTCCCTTCTACAGGGGCAGCTAACCAGCAGTCCCTACTGCTCATTACAAGCAGTCTCCCTGCAGTGCATTGACTGTGGTGTGAGTGGGCGCGAGCCCACTAGGAGCCGTATTGTAGGAGGCGACATAGCGGTGAGCGGGGCTTGGCCCTGGCAAGTCAGTCTGCACTCCAACTACCAGCACCAGTGTGGAGGCTCCATCATCAGCCCTGAGTGGATCATCACTGCAGCCCACTGTGTAGAAACGCTatcacagcccagtcagtggACGGTGTATGCGGGCTATTTGATCCAGATACAGATGGCTTATGCCACTGGCAATTCAGTGAGACGCATCATCTCTCACGAAAAATacgacaagcagactaaggataATGACATCGCTCTTATGAAACTCAACACACCCCTCACTATGTCAGataaGGTGAGACCAGTGTGTCTGCCCAACTTCGGAGTGAATCTGACTCCCCAGCGAGAAGCCTGGATCTCTGGATGGGGGTCCATTAGGAGTGGTGGGTTGGTGTCAGAAAACCTGCGTCAGGCCCGGATCACCATGTACAGCAGACACACATGTAACGCACAGTTGGTGTACAATGGACGTGTCACCACCTCTATGATCTGTGCTGGGACACTGGCAGGAGGAGTGGACTCATGTCAGGGGGATAGTGGAGGACCCATGGTGGCCAAGGAGGGTTCATTATGGTGGCTGGTAGGGGACACTAGCTGGGGTATAGGTTGTGCTCTGAAGAACAAGCCAGGAATCTACGGCAATGTCTCCCACTTCCTTCCCTGGATATATGAACAAATGCAGAAAAATTAATGGAGATACCAATGATGATGGCCTCTTTTGCTTATCAAATTCACCTGTCTGAAATGTGGCTTCTGAATAAATGACACATACACTGCTTTCAGGGATGATTTTTGGTGCCTGTTGACTtataggcaaagggtggctacattgaagaatctaaaatatattttgattgtttaacacttttttggttactacatgattccatatgagttatttcatagttttgatgtcttcac

Function

symbol description
tmprss2 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMPRSS2 (transmembrane serine protease 2).

NR:

description
transmembrane protease serine 2 isoform X2

GO:

id name namespace
GO:0006898 receptor-mediated endocytosis biological_process
GO:0006508 proteolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG:

id description
K09633 TMPRSS2; transmembrane protease serine 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623484.2 False 1993 mRNA 0.49 15 31074861 31100841
XM_021623482.2 False 1799 mRNA 0.50 13 31074861 31100847
XM_021623483.2 True 2014 mRNA 0.49 15 31074862 31100841

Neighbor

gene id symbol gene type direction distance location
LOC110537435 dscam coding downstream 43073 30895062 ~ 31031788 (-)
LOC110537432 NA coding downstream 300984 30738076 ~ 30773877 (-)
mipepb LOC106567911 coding downstream 319421 30739765 ~ 30755440 (-)
LOC110537426 NA coding downstream 402736 30648676 ~ 30672125 (-)
LOC110537425 LOC106567906 coding downstream 436823 30633836 ~ 30638038 (-)
mmp30 LOC106567923 coding upstream 12810 31113657 ~ 31122131 (-)
mmp mmp coding upstream 42228 31143075 ~ 31150780 (-)
LOC118937817 NA coding upstream 59765 31160612 ~ 31176005 (-)
LOC110537438 LOC106567925 coding upstream 84018 31184865 ~ 31200704 (-)
LOC110537440 LOC106567926 coding upstream 105916 31206763 ~ 31215499 (-)
G1059613 NA non-coding downstream 1107 31073492 ~ 31073754 (-)
G1059546 NA non-coding downstream 8167 31066468 ~ 31066694 (-)
G1059505 NA non-coding downstream 68274 31000157 ~ 31006587 (-)
G1059388 igsf5 non-coding downstream 213424 30816971 ~ 30861437 (-)
G1059352 NA non-coding downstream 330055 30743829 ~ 30744806 (-)
G1060051 NA non-coding upstream 115268 31216115 ~ 31216331 (-)
G1060052 NA non-coding upstream 115663 31216510 ~ 31216837 (-)
G1060173 NA non-coding upstream 301853 31402700 ~ 31403048 (-)
G1060181 NA non-coding upstream 312435 31413282 ~ 31413519 (-)
G1060182 NA non-coding upstream 313179 31414026 ~ 31414242 (-)
G1059610 NA other downstream 4001 31067585 ~ 31070860 (-)
LOC110537417 rnasek other downstream 622648 30447386 ~ 30452456 (-)
G1059183 NA other downstream 739605 30334827 ~ 30335256 (-)
G1061331 NA other upstream 890363 31991210 ~ 31992555 (-)
G1062051 NA other upstream 1938638 33039485 ~ 33086066 (-)
G1062603 NA other upstream 2412078 33512925 ~ 33513375 (-)
med13a med13 other upstream 2416918 33419083 ~ 33532690 (-)
LOC110537478 NA other upstream 2605625 33667535 ~ 33707659 (-)

Expression


Co-expression Network