mmp (mmp)


Basic Information

Item Value
gene id mmp
gene name mmp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 31143075 ~ 31150780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124199.1
gcccacccctctcctccGTCTCATCAACGGCCAACTAGCGTACACGGTGAGGCGCCTCCTGAAGGTTTGACCGCGGGGCAGGGGATTCCAGTagctggttgactgggagggttatggcccgaaGGAGAGGTGCTGGATCCCCGCtagggacatcctggacccaggcATCATCGCTGAGTTCCACCGCTGGCACCCCGGTCAATCAGGTATCGGTCAATCAGACATACCTGAAGACGTTCTTTAACCTGACGGAGGAGACGGGTCCAATGTTCAGACGGGGGCCCAGCCAGCGGAGCAGGAAAGTCAGCGAGATGCAGAGGTTCTTTGGCCTCAAGGTGACAGGAACCTTGGACGCTGAGACCGTAAAGATGATGAAGAAGCCACGCTGCGGGTTACCTGACGTCCAACTCGGCCGATTCACCACCTTCGATAACCTTAAGTGGCCAACAAACCAGCTTACCTACAGAATTGAGAACTACACTCCTGACATGTCTGTGGCTGAGGTGGACAACTCCATAGAGAGAGCACTACAGGTGTGGGCCAAGGTCTCCCCCCTAAGGTTCACCCGTATCTACCGCGGCACCGCTGACATCATGATCTCCTTCGGCAACAGAAATCATGGTGATTTCTACCCCTTCGATGGCCCTGAAGGCACCCTGGCCCATGCCTTCTCCCCCGGCGCTGACATTGGAGGAGATGCTCATTTTGATGATGACGAGTACTTCACCTTCAGCTCAACCAGAGGGTACAACCTGTTCTTGGTGGCTGCCCATGAGTTTGGCCATTCCCTGGGTCTCAGCCACTCCAACGACCCTGGAGCACTGATGttcccagtgtacagctacacaGAGCCCAGCACCTTCTCTCTGCCTCGTGATGATGTCACCGGTATCCAGTACATATACGGCCCAAACCCAGATGTTAACCCCAACCCAGATAAGCCCGACCCTACACCTGTTTCCACCCCTGATGCCTGTGACCCCACCCTGGTCCTGGATGCTGTCACCACTCTGCGTGGGGAGAAGATGTTCTTCAAGGGCAGGTTCTTCTGGCGTATTTACCCTCAGAGCAGCAAACCACATCAGAACCTCATCAAGACTTTCTGGCCTGAACTCCCCGACAACATCAATGCTGCTTATGAGAGCCAGCTATCTGACAGAGTGTTCCTCTTTAAAGaTCATCAGGTCTGGGCTCTCTATGGCTATGACATCGTCCCCGGCTATCCCAGAAACCTGAAGAGCTTGGGTCTGCCCAGGACCGTGAAGAAAGTTGACGCCGCCCTGTACGATGAACATTCTCGCAAGACCTTGTTCTTTGTTGGCGACAACTACTACAGTTACGATGAGGAAATGAAAAGCATGGACAGAGGTTTCCCCAAGCGTGTGGATGAACAGTTCCCAGGCATGACAAGCAAAGTGACTGCAGCCTTCCAAGTCCGAGGCTTCACCTACCTCTATAGTGGCCCCTACGTGTTTGAATACAACATGAGGACCAGAAGACAGTTCCGCGTGCTAGGAAACAACTACTTCCTGCCTTGTTAGACCATCGACCATGATGAAACGCTTAAGAAGCAGCCGTGAACAATGATGAATTTAGCCAAATGACAAAGTTGTTTCAAACATGAAGTTGTTGTATTTTTGGGAGATTTTACAGATTTGTTTTCTCTGAAATATTATTGCCATATAtctatttaaatatatatttatgtatctaaattattttatatttttcttgACTAAATAATCTGAAAACATGAATGTATATTGAATATAGGACGAACATATTTGTATATGTTGCATATTCAAATAAATTCCAAGTTTTTGTGA

Function

NR:

description
matrix metalloproteinase

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005581 collagen trimer cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K07761 5MMP; metalloendoproteinase 5-MMP

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124199.1 True 1826 mRNA 0.34 10 31143075 31150780

Neighbor

gene id symbol gene type direction distance location
mmp30 LOC106567923 coding downstream 20944 31113657 ~ 31122131 (-)
LOC110537436 tmprss2 coding downstream 42228 31074861 ~ 31100847 (-)
LOC110537435 dscam coding downstream 111287 30895062 ~ 31031788 (-)
LOC110537432 NA coding downstream 369198 30738076 ~ 30773877 (-)
mipepb LOC106567911 coding downstream 387635 30739765 ~ 30755440 (-)
LOC118937817 NA coding upstream 9832 31160612 ~ 31176005 (-)
LOC110537438 LOC106567925 coding upstream 34085 31184865 ~ 31200704 (-)
LOC110537440 LOC106567926 coding upstream 55983 31206763 ~ 31215499 (-)
LOC110537441 LOC106567928 coding upstream 78767 31229547 ~ 31235038 (-)
LOC110537443 LOC106603553 coding upstream 154143 31304923 ~ 31333428 (-)
G1059613 NA non-coding downstream 69321 31073492 ~ 31073754 (-)
G1059546 NA non-coding downstream 76381 31066468 ~ 31066694 (-)
G1059505 NA non-coding downstream 136488 31000157 ~ 31006587 (-)
G1059388 igsf5 non-coding downstream 281638 30816971 ~ 30861437 (-)
G1059352 NA non-coding downstream 398269 30743829 ~ 30744806 (-)
G1060051 NA non-coding upstream 65335 31216115 ~ 31216331 (-)
G1060052 NA non-coding upstream 65730 31216510 ~ 31216837 (-)
G1060173 NA non-coding upstream 251920 31402700 ~ 31403048 (-)
G1060181 NA non-coding upstream 262502 31413282 ~ 31413519 (-)
G1060182 NA non-coding upstream 263246 31414026 ~ 31414242 (-)
G1059610 NA other downstream 72215 31067585 ~ 31070860 (-)
LOC110537425 LOC106567906 other downstream 506353 30633836 ~ 30638038 (-)
LOC110537417 rnasek other downstream 690862 30447386 ~ 30452456 (-)
G1059183 NA other downstream 807819 30334827 ~ 30335256 (-)
G1061331 NA other upstream 840430 31991210 ~ 31992555 (-)
G1062051 NA other upstream 1888705 33039485 ~ 33086066 (-)
G1062603 NA other upstream 2362145 33512925 ~ 33513375 (-)
med13a med13 other upstream 2366985 33419083 ~ 33532690 (-)
LOC110537478 NA other upstream 2555692 33667535 ~ 33707659 (-)

Expression


Co-expression Network