LOC110537438 (LOC106567925)


Basic Information

Item Value
gene id LOC110537438
gene name LOC106567925
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 31184865 ~ 31200704 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623486.2
ATCCATTAGTAGGCTACTAAAGATTCAGCactcctccctcacacacacagctctaccGTTCGTTTTTTCCATCATGGCTCCCTCAGCAGACAGACTGGGATATTGGGGGCGACCAACCTCAACGCTGGATTGGTGTGAGGAGAATTATGTCGTCTCTTTCTACATCGCAGAATTCTGGAACACTGTCAGTAACCTGATTATGATCCTGCCTCCTATCTACGGTGCCATCCAGACGTATAAAGGCGGCCTAGAGTACCGCTACGTCTACTCCTTCCTTGGACTGGCAGCTGTTGGCATTGGTTCCTGGTGCTTCCATATGACGCTGCAATATGAGATGCAGTTGCTGGACGAGCTGCCAATGATCTACAGCACCTGTGTCTTTGTCTACTGTCTATATGAATGCTTCAAGCAAAAAAACACTTTGGGTGTATTCCCTATCATGTTGTTATTCATCTTCAGTGTCTCAGTCAGTGTGGTGTATTTACAATGGAAAGAGCCAGTCTTTCACCAGGTCATGTATGGTGCACTTGTAGCATGCTTGGTGATGCGCTCTATCTTCATAGTTACATGGGTGTACCCCTGGCTCAAACCTGTGTGTTACATCTCCCTGAGTGTCTTTCTGCTGGGGTTCATGTTGTGGAACATTGATAATCTGGCCTGTGACTCACTCAGATCCACCAGACAGAGACTGCCCCCTGTTGTTGGGGCGGTGACACAGTTCCATGCCTGGTGGCACATCCTCACAGGCCTGGGCTCCTACCTACACATACTCTTCAGCCTCCAGATAAGGTCAACCTTTCTCAAACACAGACCAAAAGTAAAGTTCCTATGTGGAGTGTGGCCCATGTTGCACATTGAGGCACAAAAGACTAGCTGAGTGACTGGGGACCATGAAGGATGGTGACTGCCATTAAACAGGCATCAGCACAGAGACCTGACCTGCCAGTCTGCCAACCCCCCTCTGCTGTCTATGGGACATATGTACCCCACTACCAGAGGGCAGCCAGGCTACACCCCAACCTACCACTCCGGGGACCCTTTGGTTCTGCACTGTGACGATTTGCCAAGTACAGTATAGCATTGAGAGTTTATATGGAATTATCTGATTTTTCACTTTCATCTATCAACATATAGTAGATTATTAGATTTTGGTGGTGATGTTGTAGTGACATTTTGTTTAAATTTACTCGAACATATTTCCTGGAATAtggataccacaaaaaaaaaaatatatataaatcatactagtgtatctattagaggtcgaccgattatgatttttcaacgccgataccgattattggaggaccaaaaaaagccgataccgattaatc

Function

NR:

description
alkaline ceramidase 3-like

GO: NA

KEGG:

id description
K04711 ACER3, YDC1; dihydroceramidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623486.2 True 1334 mRNA 0.46 11 31184865 31200704

Neighbor

gene id symbol gene type direction distance location
LOC118937817 NA coding downstream 8860 31160612 ~ 31176005 (-)
mmp mmp coding downstream 34085 31143075 ~ 31150780 (-)
mmp30 LOC106567923 coding downstream 62734 31113657 ~ 31122131 (-)
LOC110537436 tmprss2 coding downstream 84018 31074861 ~ 31100847 (-)
LOC110537435 dscam coding downstream 153077 30895062 ~ 31031788 (-)
LOC110537440 LOC106567926 coding upstream 6059 31206763 ~ 31215499 (-)
LOC110537441 LOC106567928 coding upstream 28843 31229547 ~ 31235038 (-)
LOC110537443 LOC106603553 coding upstream 104219 31304923 ~ 31333428 (-)
LOC110536848 LOC106568063 coding upstream 512544 31713248 ~ 31738374 (-)
LOC110539140 LOC106567939 coding upstream 637182 31837886 ~ 31840018 (-)
G1059613 NA non-coding downstream 111111 31073492 ~ 31073754 (-)
G1059546 NA non-coding downstream 118171 31066468 ~ 31066694 (-)
G1059505 NA non-coding downstream 178278 31000157 ~ 31006587 (-)
G1059388 igsf5 non-coding downstream 323428 30816971 ~ 30861437 (-)
G1059352 NA non-coding downstream 440059 30743829 ~ 30744806 (-)
G1060051 NA non-coding upstream 15411 31216115 ~ 31216331 (-)
G1060052 NA non-coding upstream 15806 31216510 ~ 31216837 (-)
G1060173 NA non-coding upstream 201996 31402700 ~ 31403048 (-)
G1060181 NA non-coding upstream 212578 31413282 ~ 31413519 (-)
G1060182 NA non-coding upstream 213322 31414026 ~ 31414242 (-)
G1059610 NA other downstream 114005 31067585 ~ 31070860 (-)
LOC110537432 NA other downstream 411058 30738076 ~ 30773877 (-)
LOC110537425 LOC106567906 other downstream 548143 30633836 ~ 30638038 (-)
LOC110537417 rnasek other downstream 732652 30447386 ~ 30452456 (-)
G1059183 NA other downstream 849609 30334827 ~ 30335256 (-)
G1061331 NA other upstream 790506 31991210 ~ 31992555 (-)
G1062051 NA other upstream 1838781 33039485 ~ 33086066 (-)
G1062603 NA other upstream 2312221 33512925 ~ 33513375 (-)
med13a med13 other upstream 2317061 33419083 ~ 33532690 (-)
LOC110537478 NA other upstream 2505768 33667535 ~ 33707659 (-)

Expression


Co-expression Network