LOC110537441 (LOC106567928)


Basic Information

Item Value
gene id LOC110537441
gene name LOC106567928
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 31229547 ~ 31235038 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623489.2
GTCATTAACATTTTCCATTCCCCAACTTCCAGAATATTTCCCCCATGGTTTGTAGACCAGCTGAAGGATCGTGTGGAAGCTGAGAGAGAAATTAGAGGACAACTGCTGAAAGAGCCTGGCGTTTTACAGCTGCAGTGTCAACGTGGCTCTTGAGTCTTGCCTTGAATGTCTACTTGGAGACTCTCCAATGGCACGGTCAACCCTGCTCTCAGATTCTCTACCAATGAATTCAGTCTCTACTGATATGGTTGACACCATGTGGGTGACTAACCTGGTAGCCATGGCCCTATTGGCCACTGCAGCCTCCGCTGCCACCGCCGCCTCAACAGACAAGGTCTTGAGCAACCACGCCACCCTGCTGGCTGACAACAGCGCCAGCCTGGCCTTCAGTCTCTACCAGAACATAGCCAAGGAAAAGGACCTGGAGAACATCCTCATCTCCCCGGTGGTGGTGGCCTCTTCCCTGGGCCTGGTGGCACTCGGGGGCAAGGCCTCCACTGCTTCCCAGGTCAAGACCGTGCTGAGCGCTAACAAAGTGAAGGACGAGCAGCTGCATGCTGGCCTGGCCGAGCTCCTGGAGGAGGTCAGCGACTCCAAGGCCCGTAACGTCACCTGGAAGATCAGCAACCGCCTATACAGCCCCAGCTCGGTCAACTTTGCAGATGCCTTTGTCAAGAGCAGCAAGAAGCACTACAAATATGAACACACAAAGATAAACTTCAAGAACAAGAAGAGCGCTGTGAAGTCCATCAACGATTGGGCGGCCAAATCCACCGATGGCAAGCTGCCCGAGGTAACCAAGGATGTGGAGAAGACCGATGGGGCCATGATCATCAATGCCATGTTCTTTAAACCCCATTGGGATGAACAGTTCCACCATAAGATGGTGGACAACCGTGGCTTCCTGGTGTCTCACACTCACACTGTTGGTGTACCCATGATGCACCGCACAGGTATCTATGGCTTCCACGAAGACACGGTGAATAAGCTGTTCATCCTGAGCATGCCCCTGGCCCATAAGAAGTCCAGCCTGGTGTTCTTCATGCCCTACCACGTGGAGCCCCTGGAGAGGCTGGAGAAGCTGCTGACCCGCAAGCAGCTGGAAGACTGGATGGGCAAGCTAAAGGAGATGGCTGTTGCTGTGTCTCTTCCCAAAGTCTGCATGGAAGTCAGCCACAACATCCAGaaacaCCTTGGGGAGCTGGGTCTGACTGAGGCTGTGGATAAGACCAAGGCGGACCTGTCCAACATCTCTGGGAAGAAGGACCTGTATCTGTCCAATGTATTCCATGCCTCTGCCATGGAGTGGGACACCGATGGGAACCCCATAGACATAAGCATCTTCGGCACAGACAAGCTGAAGAACCCCAAGCTGTTCTACGCTGACCATCCCTTCATCTTCCTGGTGAAGGACACCAAGACCAACTCCATCCTCTTCCTCGGCAGACTGGTGCGACCTAAGGGCAAGAAGATGAGAGATGAATTATAACACTTTGGAGTCTTATGTGAAGTGTTTTTGTATGTGTGCGTGTTATGGTGTTTATGTGTTTGTATTTTTCTATgcaaagagaggaaagggagaaaatGAATTGTACGTTTAATACCTCAAGAGTACATTCCCATTTGATCATAAATGTGCCAACATTTGTTCCTGTTGTTCACTATGCATGATTCAGAATGATATGTTTGTGTTGTAAGAAACAAAGCATTGTGTACTCTTAACTTCAACTGGACATGGTATTATCATCAAGCCTGTTTTCAAAACTGAATATCACCCCATTTCACAAAAGAGAGTGATAATTGGGTTTGGTCACCCTCATGTTTGAGTATTTCAATTAAGATGAGATCACAGGATGGATACTTACATTAACTATTGCTTAAATGTAAAATAAGCattcctctgttttcctctcctgtctccagttGGGATCCCAACTGATTGCACACTCTTTCACTTCACTTTGGATTATAGGCTATTTTTGTATTGTGTGGGCTCTTCCAATATATTTAATGTTTAAagtaaaaacacatttttcacaAGCTTTTTCACAGGTTTACAACCTGGTGCTAGCCTTTTGTTCACTCCCCCAAAGAACATTCATCGATGACCCAAGGGTCACGCCTCTGTCTGCTACTCTGCTTGGCTTTTTACTGATCCACACAGAAGGCACTGCACAGCACTCTATAGCTAACTTACTAGTGAAAGAAAAAAAGTATCAgggatcaaggtaagacccagatgcagactgtcgaagtaacaatgtttattgtagcaacaggggcaggcggactcagggtcagggacaggcagagttcagtaatccagaggtggagcaaaggtacaggacggcaggcaggctcagggtcgggCAGAGAGGTCAggtgggcgggtacagggtcaggacaggcaaaggtcgaAAATCAGGAGGACGATtaaaagagaggctgggaaacgaTAGGAGCTGACAGGAAAAATGCTGGTAAGCTTGAAtgaacaagacgaactggcaacaaacagaaTGAGaaaacaggtataaatacacaggggataatagggaagatgggcgacacctggaggggggtggagacaagcacaaggacaggtgaaacagatcagggcgtgacagaaaggCCATGTCTGTGGAAGGCTTTTGACTAATCAGTCTTGTCTCCAACACTATCACATTTtgccacaaaaaaaatatttttgggaacaATGGAATGGTATGAGATATTTACAAGTTTCCTCTTTTTCCCATAAAATGGTAATACAAAGAAAGTTGTAATGTGACTTTGTTTGATAGTGGGCTGTGGGTGACTACTAGGATGAAATGATAGCCATAGGTAGTGTGGCTAGCAtttgtgatgtcatgcaaagtagCCAATAGGTTTTTCCAACTGGTTGGCTGTAAAGGAATTCTAGCTATGGGGCTTTAGAGTACACAAGGAAGgtcagatacactatatataaaaagtatatggacatcccttcaaaata
>XM_021623490.2
GATACTGTGGGAGTGCCCAGTGCATTGAAAATCACTGTACGTCATTAACATTTTCCATTCCCCAACTTCCAGAATATTTCCCCCATGGTTTGTAGACCAGCTGAAGGATCGTGTGGAAGCTGAGAGAGAAATTAGAGGACAACTGCTGAAAGAGCCTGTCTCTACTGATATGGTTGACACCATGTGGGTGACTAACCTGGTAGCCATGGCCCTATTGGCCACTGCAGCCTCCGCTGCCACCGCCGCCTCAACAGACAAGGTCTTGAGCAACCACGCCACCCTGCTGGCTGACAACAGCGCCAGCCTGGCCTTCAGTCTCTACCAGAACATAGCCAAGGAAAAGGACCTGGAGAACATCCTCATCTCCCCGGTGGTGGTGGCCTCTTCCCTGGGCCTGGTGGCACTCGGGGGCAAGGCCTCCACTGCTTCCCAGGTCAAGACCGTGCTGAGCGCTAACAAAGTGAAGGACGAGCAGCTGCATGCTGGCCTGGCCGAGCTCCTGGAGGAGGTCAGCGACTCCAAGGCCCGTAACGTCACCTGGAAGATCAGCAACCGCCTATACAGCCCCAGCTCGGTCAACTTTGCAGATGCCTTTGTCAAGAGCAGCAAGAAGCACTACAAATATGAACACACAAAGATAAACTTCAAGAACAAGAAGAGCGCTGTGAAGTCCATCAACGATTGGGCGGCCAAATCCACCGATGGCAAGCTGCCCGAGGTAACCAAGGATGTGGAGAAGACCGATGGGGCCATGATCATCAATGCCATGTTCTTTAAACCCCATTGGGATGAACAGTTCCACCATAAGATGGTGGACAACCGTGGCTTCCTGGTGTCTCACACTCACACTGTTGGTGTACCCATGATGCACCGCACAGGTATCTATGGCTTCCACGAAGACACGGTGAATAAGCTGTTCATCCTGAGCATGCCCCTGGCCCATAAGAAGTCCAGCCTGGTGTTCTTCATGCCCTACCACGTGGAGCCCCTGGAGAGGCTGGAGAAGCTGCTGACCCGCAAGCAGCTGGAAGACTGGATGGGCAAGCTAAAGGAGATGGCTGTTGCTGTGTCTCTTCCCAAAGTCTGCATGGAAGTCAGCCACAACATCCAGaaacaCCTTGGGGAGCTGGGTCTGACTGAGGCTGTGGATAAGACCAAGGCGGACCTGTCCAACATCTCTGGGAAGAAGGACCTGTATCTGTCCAATGTATTCCATGCCTCTGCCATGGAGTGGGACACCGATGGGAACCCCATAGACATAAGCATCTTCGGCACAGACAAGCTGAAGAACCCCAAGCTGTTCTACGCTGACCATCCCTTCATCTTCCTGGTGAAGGACACCAAGACCAACTCCATCCTCTTCCTCGGCAGACTGGTGCGACCTAAGGGCAAGAAGATGAGAGATGAATTATAACACTTTGGAGTCTTATGTGAAGTGTTTTTGTATGTGTGCGTGTTATGGTGTTTATGTGTTTGTATTTTTCTATgcaaagagaggaaagggagaaaatGAATTGTACGTTTAATACCTCAAGAGTACATTCCCATTTGATCATAAATGTGCCAACATTTGTTCCTGTTGTTCACTATGCATGATTCAGAATGATATGTTTGTGTTGTAAGAAACAAAGCATTGTGTACTCTTAACTTCAACTGGACATGGTATTATCATCAAGCCTGTTTTCAAAACTGAATATCACCCCATTTCACAAAAGAGAGTGATAATTGGGTTTGGTCACCCTCATGTTTGAGTATTTCAATTAAGATGAGATCACAGGATGGATACTTACATTAACTATTGCTTAAATGTAAAATAAGCattcctctgttttcctctcctgtctccagttGGGATCCCAACTGATTGCACACTCTTTCACTTCACTTTGGATTATAGGCTATTTTTGTATTGTGTGGGCTCTTCCAATATATTTAATGTTTAAagtaaaaacacatttttcacaAGCTTTTTCACAGGTTTACAACCTGGTGCTAGCCTTTTGTTCACTCCCCCAAAGAACATTCATCGATGACCCAAGGGTCACGCCTCTGTCTGCTACTCTGCTTGGCTTTTTACTGATCCACACAGAAGGCACTGCACAGCACTCTATAGCTAACTTACTAGTGAAAGAAAAAAAGTATCAgggatcaaggtaagacccagatgcagactgtcgaagtaacaatgtttattgtagcaacaggggcaggcggactcagggtcagggacaggcagagttcagtaatccagaggtggagcaaaggtacaggacggcaggcaggctcagggtcgggCAGAGAGGTCAggtgggcgggtacagggtcaggacaggcaaaggtcgaAAATCAGGAGGACGATtaaaagagaggctgggaaacgaTAGGAGCTGACAGGAAAAATGCTGGTAAGCTTGAAtgaacaagacgaactggcaacaaacagaaTGAGaaaacaggtataaatacacaggggataatagggaagatgggcgacacctggaggggggtggagacaagcacaaggacaggtgaaacagatcagggcgtgacagaaaggCCATGTCTGTGGAAGGCTTTTGACTAATCAGTCTTGTCTCCAACACTATCACATTTtgccacaaaaaaaatatttttgggaacaATGGAATGGTATGAGATATTTACAAGTTTCCTCTTTTTCCCATAAAATGGTAATACAAAGAAAGTTGTAATGTGACTTTGTTTGATAGTGGGCTGTGGGTGACTACTAGGATGAAATGATAGCCATAGGTAGTGTGGCTAGCAtttgtgatgtcatgcaaagtagCCAATAGGTTTTTCCAACTGGTTGGCTGTAAAGGAATTCTAGCTATGGGGCTTTAGAGTACACAAGGAAGgtcagatacactatatataaaaagtatatggacatcccttcaaaata

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005615 extracellular space cellular_component

KEGG:

id description
K09501 SERPINH1, HSP47; serpin peptidase inhibitor, clade H, member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623489.2 False 2998 mRNA 0.47 6 31229547 31234998
XM_021623490.2 True 2923 mRNA 0.47 5 31229547 31235038

Neighbor

gene id symbol gene type direction distance location
LOC110537440 LOC106567926 coding downstream 14048 31206763 ~ 31215499 (-)
LOC110537438 LOC106567925 coding downstream 28843 31184865 ~ 31200704 (-)
LOC118937817 NA coding downstream 53542 31160612 ~ 31176005 (-)
mmp mmp coding downstream 78767 31143075 ~ 31150780 (-)
mmp30 LOC106567923 coding downstream 107416 31113657 ~ 31122131 (-)
LOC110537443 LOC106603553 coding upstream 69885 31304923 ~ 31333428 (-)
LOC110536848 LOC106568063 coding upstream 478210 31713248 ~ 31738374 (-)
LOC110539140 LOC106567939 coding upstream 602848 31837886 ~ 31840018 (-)
LOC110537451 NA coding upstream 662572 31897610 ~ 31900587 (-)
LOC118937661 LOC106567942 coding upstream 724589 31959627 ~ 31961527 (-)
G1060052 NA non-coding downstream 12710 31216510 ~ 31216837 (-)
G1060051 NA non-coding downstream 13216 31216115 ~ 31216331 (-)
G1059613 NA non-coding downstream 155793 31073492 ~ 31073754 (-)
G1059546 NA non-coding downstream 162853 31066468 ~ 31066694 (-)
G1059505 NA non-coding downstream 222960 31000157 ~ 31006587 (-)
G1060173 NA non-coding upstream 167662 31402700 ~ 31403048 (-)
G1060181 NA non-coding upstream 178244 31413282 ~ 31413519 (-)
G1060182 NA non-coding upstream 178988 31414026 ~ 31414242 (-)
G1060183 NA non-coding upstream 179930 31414968 ~ 31415269 (-)
G1060185 NA non-coding upstream 182264 31417302 ~ 31417614 (-)
G1059610 NA other downstream 158687 31067585 ~ 31070860 (-)
LOC110537432 NA other downstream 455740 30738076 ~ 30773877 (-)
LOC110537425 LOC106567906 other downstream 592825 30633836 ~ 30638038 (-)
LOC110537417 rnasek other downstream 777334 30447386 ~ 30452456 (-)
G1059183 NA other downstream 894291 30334827 ~ 30335256 (-)
G1061331 NA other upstream 756172 31991210 ~ 31992555 (-)
G1062051 NA other upstream 1804447 33039485 ~ 33086066 (-)
G1062603 NA other upstream 2277887 33512925 ~ 33513375 (-)
med13a med13 other upstream 2282727 33419083 ~ 33532690 (-)
LOC110537478 NA other upstream 2471434 33667535 ~ 33707659 (-)

Expression


Co-expression Network