LOC110537443 (LOC106603553)


Basic Information

Item Value
gene id LOC110537443
gene name LOC106603553
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 31304923 ~ 31333428 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623496.2
CATCCTTCCTGACTTAGAGGAAATGTACCTGCTCTGCACAACTGTTGCGGGGGAGTAGGTTGTTGATATGATGATTGGTCGAATAGGCTACAGCACAGTTGATATGATGATTGGTCGAATAGGCTACAGCACAGTTGTTTTTGATCCAAAATAAGAAGTATCCAGCGGTAATTCAGATTCAGCACAATGCTTCACAGGAAACCGTCAAACGTCTCAAACAAAGACCCAAAGAGCAAGACAAAACCGAAGCGCTCCACCAGCTTTGGCCGATTTGACACCTTTAGACACCAACCAGCCCAAGTGAAGCCAGTGGAAAATGGCGATCCTTCGTCTGCAGAGGGAGAGCAGGTTGACAGTGGTGACCAGACCAGATCAGGAGGTATAGGGAAGAAGATGAAGGCCATCTCACTGACGATGATGAAGAGGATGGGCAGGAATTATGCCAAAGCCCTGTCAGAGGAAATGGTtgacgggacagagagagatgaagaaggaGAAGGGGATATTGTTAATGGTGTCCATTCATTTCCAAAAGGACACAGAGTGTCCAGTCACTCCCTTGAAAGTCTCTACGGTCTCAACAGTGGACACAGCAATTCCAGTGGGTTGACCAGCGGGTCAGATGGCTTCAGTAACAGAGACAGTCTGAGGCTGGATGAGGTGCTGCCCTACACAGGCCAGTTCTGTGGCAGAGCCCGGGTCCACACAGACTTTGTCCCCAGTCCCTACGACACGGAATCACTTAAACTTAAGGTGGGGGATGTGATTGAGATAATCAGCAAGCCTCCTGTGGGTATATGGACAGGCATGCTGAACAACAAGGTGGGAAACTTTAAGTTCATCTACGTGGACCTCATAGTAGAGAAGGTTCCTGAACTGCCTCAGAAGATGAGGACACACAGGAGGAGCAGGAGACCCCGTCCCAAAACGCTACAGGAGCTCCTAGAGCGCCTCAATCTGGAGGAGTATGCCTCTTCACTGCTCCTGAATGGCTATCAAACAGTAGATGACCTGCAAGAGCTGAAGGAGAAGTATCTGATGGAACTCAATGTGACTGATCCTGAACACAGACATCTTCTCATGGCAGCCATCGAGTGCCTCCAAGAACCCCAAAGTGATGGTGAGGAGGGAGAGTTAAACCAGGATGCCAAGTCCCCGACTGAGAGTGTTAAAGCGGACCTGAACGACTGCCCCAGAGACTCTGGCTGTTACATCCCTTCGGACTGCTCAGACAACAGCAAGGAGACAGACATCCACCTGCAAGCACTGCACCATCATCCTCCCATGGCTCAGACCTAACCTAAAAATGATCGATGTGGATCGATGCAATTCACCCAGATCATGATCTAATGTGAAAGCCCTTTTCTGCATTACAAGAGCACTCCTATTTGCTTTCATACTGCATTTAGTATCTGTAGCCTATGTGGCTGGCACTGCAATTTTATGCATGAAGCTACTGTACACAATTTCCTGTTCTAGTGAGTTGGATTGGCTGCTGGTTTGTAAATGTTAATGATGATGTAGCCCAAGCCTTTCAAATCATTGACATTGGACCTGTGAAATCATCACAGTGGGCTAGGCTTTGTTTTTAGCACAATGTGCAATGTCAACTTTACTGTGTGTGGGTGTACAGTACAAGAGGTGCCTGTGGAAATGGGAGAGATTAAATACAGgcaggtcacccatgatacaagtcagttTTCAATGTCCATACATGTCTGAGGAGGTCGGGAGAGGACGTGGAAACTGGCTCTAGGGGTTACAGTAAGTGCTGTTATCTTTAAGTAGGTATTGTGGACAGGTATGGCAGATGTGCGTAAGCATCTGCCTGTGGCTCCAAAGGCTGCATGTTTGAATCCagcaatagaaagttgtttttgatattttgCTTTAagcctatccctaaccttaacccttaccttaaccatttggtgttaatgcctaaccttaagacttcagagttaatacctaaaaTTTAACCTTGGAATTATACAGAGAAGTAActaaacactttgacgtttgatGTTGGGAATAACTTCAAAATGTCATGTttaagaaacatggatgaacgtctaattctgatgtgCGACTGCGAGAGCTTGTTGATTAAATGAGGGTTTAAAGGATTTTTGTACTGTATCTTATGGTTTTGATTTATGGTATTATTTAACATTTTGTTAAAGTGCTTTGAGAGTGAGTAGCATACTGTCAGTTTCTTGAATGCTCTCCTTCATTAAAGCAATTGTTACACAAATGTATTATTGAAATGCAGCTGTTAAATCATTTATGGTGAGAATGGCACACAGGGCAAAATCATTTTGGGCTGAAGTTTCGATGAGAAGAACAACCAGCAGAAGTATGgcaacatatacagttgaagtcggaagtttacatacacttaggttggagtcattaaaactcgtttttcaaccactccaccaatttcttgttaacaatccATA

Function

NR:

description
SAM domain-containing protein SAMSN-1-like

GO: NA

KEGG:

id description
K23707 SAMSN1; SAM domain-containing protein SAMSN-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623496.2 True 2462 mRNA 0.45 8 31304923 31333428

Neighbor

gene id symbol gene type direction distance location
LOC110537441 LOC106567928 coding downstream 69885 31229547 ~ 31235038 (-)
LOC110537440 LOC106567926 coding downstream 89424 31206763 ~ 31215499 (-)
LOC110537438 LOC106567925 coding downstream 104219 31184865 ~ 31200704 (-)
LOC118937817 NA coding downstream 128918 31160612 ~ 31176005 (-)
mmp mmp coding downstream 154143 31143075 ~ 31150780 (-)
LOC110536848 LOC106568063 coding upstream 379820 31713248 ~ 31738374 (-)
LOC110539140 LOC106567939 coding upstream 504458 31837886 ~ 31840018 (-)
LOC110537451 NA coding upstream 564182 31897610 ~ 31900587 (-)
LOC118937661 LOC106567942 coding upstream 626199 31959627 ~ 31961527 (-)
LOC110537458 LOC106567946 coding upstream 804571 32137999 ~ 32300172 (-)
G1060052 NA non-coding downstream 88086 31216510 ~ 31216837 (-)
G1060051 NA non-coding downstream 88592 31216115 ~ 31216331 (-)
G1059613 NA non-coding downstream 231169 31073492 ~ 31073754 (-)
G1059546 NA non-coding downstream 238229 31066468 ~ 31066694 (-)
G1059505 NA non-coding downstream 298336 31000157 ~ 31006587 (-)
G1060173 NA non-coding upstream 69272 31402700 ~ 31403048 (-)
G1060181 NA non-coding upstream 79854 31413282 ~ 31413519 (-)
G1060182 NA non-coding upstream 80598 31414026 ~ 31414242 (-)
G1060183 NA non-coding upstream 81540 31414968 ~ 31415269 (-)
G1060185 NA non-coding upstream 83874 31417302 ~ 31417614 (-)
G1059610 NA other downstream 234063 31067585 ~ 31070860 (-)
LOC110537432 NA other downstream 531116 30738076 ~ 30773877 (-)
LOC110537425 LOC106567906 other downstream 668201 30633836 ~ 30638038 (-)
LOC110537417 rnasek other downstream 852710 30447386 ~ 30452456 (-)
G1059183 NA other downstream 969667 30334827 ~ 30335256 (-)
G1061331 NA other upstream 657782 31991210 ~ 31992555 (-)
G1062051 NA other upstream 1706057 33039485 ~ 33086066 (-)
G1062603 NA other upstream 2179497 33512925 ~ 33513375 (-)
med13a med13 other upstream 2184337 33419083 ~ 33532690 (-)
LOC110537478 NA other upstream 2373044 33667535 ~ 33707659 (-)

Expression


Co-expression Network