LOC118937661 (LOC106567942)


Basic Information

Item Value
gene id LOC118937661
gene name LOC106567942
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 31959627 ~ 31961527 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034946.1
GAAGACCGTCTTAACGTACCTTTCAGTGTGCATTGGAAACCTGAAGAATAGCGATGCTGACCTATTACTTTTTATGGTGCAATTTGGAGCTGCGCAAAAGTTTGCCATGGTTTGCTTATGGTAGTATAATGCTTTTCAAAAGTAATTTACTTCAATATTAATTTATCCAGAAATTAGGAAAAAATGGACTCACACGCAACAGTGCTTTATGTGGCCTGGAGGAATCAACGCGACGCGCGATTAAATCACGGCCTTCCCACAATGCTTTGCTAACGTAACTCAGTACGCATGTTTGTCACTGTCCTGTTCATATCACCTCAGGGTTCCAATACTGATATTAGCTTTCCTTGCGCCCTTCGGATCAACACATGCCTGCACAACTATCCACACAAGACATTTCAAAGGAGTTTTGACATGGTTCATGTTTGGCCCTCCGAAACTCGTTAGCCAGACCTCCTCATCCCACTCATCCAAAGACTCAGATCCTCTCCAGGTCTTTGGGATGGTCAGGCAGGTCCTCCAGGAGAGCAGGGTTCCTCCTGTAGATGTAAGCACTGGCATCGTCGTCCAGATTCACCAGCTCTGCCAGTGAGGACACACAGGTGTCGTGGTCTGTCAGCATCCCAGGCAGGTGGGATGACTTGCGCTGGATACGACAGGAACGACGGACTGGTGTCAGGAACTTCAGATCTTTGATGGTGTTTTTTCGCTTGGAACCACTTGCACATGCTTCAGTGTTGATTGTTCTCTTAACACTAGAAGGGGAAAGATAGACAGAATTGTGTGGTTAGTTGACAGCCATGTTCAGTTTAATATACATTTCAATATAGAGATGTGAAGTAGTGATGTTCTCCATGACCTCCAGTATTTCCAATAATTGTATGGAAGTGATTTTAAAATAGGTATTTAAGATAAGAAATATCACCTTTGAAGGTATGGCGTTGTCTTCAGATTGTATTTCACTATGGAGGCTCCCTCTGGTGTAGTCTCCATCAAGCATTCGTCATCATAATCACTATCAACTTCCTCAATATAACCCTTCCTTACTTTCTGCTCTGAAGCTCCCTCTCCTACTTCACTTTTCACTTCTTCAGACCTGTCAAAATTATTCTCAGCAAACTCATTCCTCTCTTCAAATCCATAATTTGTCTCAGCCTCCACAATTTTCTCTTCAGATTCCTTTTTCTCATGTGGCTCTAAAAGAAAAAAAGAACACACCAATGAATAACACATGAATAAAGTTAACATGATAAAA
>TU1209015
CTGATATTAGCTTTCCTTGCGCCCTTCGGATCAACACATGCCTGCACAACTATCCACACAAGACATTTCAAAGGAGTTTTGACATGGTTCATGTTTGGCCCTCCGAAACTCGTTAGCCAGACCTCCTCATCCCACTCATCCAAAGACTCAGATCCTCTCCAGGTCTTTGGGATGGTCAGGCAGGTCCTCCAGGAGAGCAGGGTTCCTCCTGTAGATGTAAGCACTGGCATCGTCGTCCAGATTCACCAGCTCTGCCAGTGAGGACACACAGGTGTCGTGGTCTGTCAGCATCCCAGGCAGGTGGGATGACTTGCGCTGGATACGACAGGAACGACGGACTGGTGTCAGGAACTTCAGATCTTTGATGGTGTTTTTTCGCTTGGAACCACTTGCACATGCTTCAGTGTTGATTGTTCTCTTAACACTAGAAGGGGAAAGATAGACAGAATTGTGTGGTTAGTTGACAGCCATGTTCAGTTTAATATACATTTCAATATAGAGATGTGAAGTAGTGATGTTCTCCATGACCTCCAGTATTTCCAATAATTGTATGGAAGTGATTTTAAAATAGGTATTTAAGATAAGAAATATCACCTTTGAAGGTATGGCGTTGTCTTCAGATTGTATTTCACTATGGAGGCTCCCTCTGGTGTAGTCTCCATCAAGCATTCGTCATCATAATCACTATCAACTTCCTCAATATAACCCTTCCTTACTTTCTGCTCTGAAGCTCCCTCTCCTACTTCACTTTTCACTTCTTCAGACCTGTCAAAATTATTCTCAGCAAACTCATTCCTCTCTTCAAATCCATAATTTGTCTCAGCCTCCACAATTTTCTCTTCAGATTCCTTTTTCTCATGTGGCTC

Function

NR:

description
cytoskeleton-associated protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034946.1 False 1255 mRNA 0.42 2 31959627 31961527
TU1209015 True 866 lncRNA 0.44 2 31959685 31961196

Neighbor

gene id symbol gene type direction distance location
LOC110537451 NA coding downstream 59040 31897610 ~ 31900587 (-)
LOC110539140 LOC106567939 coding downstream 119609 31837886 ~ 31840018 (-)
LOC110536848 LOC106568063 coding downstream 221253 31713248 ~ 31738374 (-)
LOC110537443 LOC106603553 coding downstream 626199 31304923 ~ 31333428 (-)
LOC110537441 LOC106567928 coding downstream 724589 31229547 ~ 31235038 (-)
LOC110537458 LOC106567946 coding upstream 176472 32137999 ~ 32300172 (-)
LOC110537459 LOC106567948 coding upstream 342670 32304197 ~ 32323673 (-)
LOC110537460 LOC106567949 coding upstream 372437 32333964 ~ 32344103 (-)
umodl1 LOC106568047 coding upstream 429007 32390534 ~ 32401265 (-)
LOC110537466 LOC106567955 coding upstream 453036 32414563 ~ 32416279 (-)
G1061295 NA non-coding downstream 10309 31949029 ~ 31949318 (-)
G1061294 NA non-coding downstream 10684 31948367 ~ 31948943 (-)
G1061291 NA non-coding downstream 13307 31945823 ~ 31946320 (-)
G1061288 NA non-coding downstream 19080 31940127 ~ 31940547 (-)
G1061286 NA non-coding downstream 21833 31937559 ~ 31937794 (-)
G1061289 NA non-coding upstream 6982 31968509 ~ 31968794 (-)
G1061313 NA non-coding upstream 7812 31969339 ~ 31969621 (-)
G1061314 NA non-coding upstream 8622 31970149 ~ 31970382 (-)
G1061315 NA non-coding upstream 9466 31970993 ~ 31971309 (-)
G1061319 NA non-coding upstream 13783 31975310 ~ 31975535 (-)
G1059610 NA other downstream 888767 31067585 ~ 31070860 (-)
LOC110537432 NA other downstream 1185820 30738076 ~ 30773877 (-)
LOC110537425 LOC106567906 other downstream 1322905 30633836 ~ 30638038 (-)
LOC110537417 rnasek other downstream 1507414 30447386 ~ 30452456 (-)
G1059183 NA other downstream 1624371 30334827 ~ 30335256 (-)
G1061331 NA other upstream 29683 31991210 ~ 31992555 (-)
G1062051 NA other upstream 1077958 33039485 ~ 33086066 (-)
G1062603 NA other upstream 1551398 33512925 ~ 33513375 (-)
med13a med13 other upstream 1556238 33419083 ~ 33532690 (-)
LOC110537478 NA other upstream 1744945 33667535 ~ 33707659 (-)

Expression


Co-expression Network