LOC110537454 (LOC106567941)


Basic Information

Item Value
gene id LOC110537454
gene name LOC106567941
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 31971901 ~ 31995685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939504.1
cagatggcTACAACAATGACAAACTGCCATGTGGGAAATCGTTTTGTCCAACGAACCATGGTGGAATTagccattactattgctctctatatGACTCATTCTGCACAGAGATGTAAACAATGGTTAAATAATTGTCATCGATCTGACTTGGAGCCAAAAACCCCTGAGGAGTTACACAATTCCTTCCAAATTTGTGCAAATCATTTTGAGCCTTCCTTGATTTGTCGTGACAGCACTTTAAGAACATCCTTGAAAGAGGGTGCTATTCCAACCAGATTTGATTTTACAAGCCATTTgaacaatccatcaggccacaaACGGAATAAAAGAATAAGAGAACCTGCTGAGGCAGAGCTTGCATCCTTGAAGAAAGCTAAAGGGGATTGGTTTGAAGATGATGCTCCATCTGAGGTGAAAGATAAACCAGGAGAGAATAGCGCAACATGTGATTTACAGCAAGAGGAACAAAAGAGAGAGGATGTCGCTAACTCCAAAGCAAAGGAAATCCTTAAAGTCTACTTTAAGGAAACCCTTGCCTTCACTGGATTCAGCATAGGGAACGATGCAAACCCCAACACAGATGAACCGATGGGAGACCACAGAGGACAACAGTCTCTCAACCCCATCTGTGTTGAAAAAATCGACCAGAAAGAAGTCCTCCAGTTCAGTGAGGACCTCATGCGGGAGGAGATCCGGAACAGTTTGAGGTTGGCACGCTTTTTCTCCATCCTGCTTCAAGATGTGACAAACATAGAGGGAAAAGATCAGATCCCAGTTTTCATCAGGTCCGTCACCGTGGCAGGGTTCCCCCAGAAACACCTCATGGGTTTCCTGCCCTGTTATGCAGATGCTGAGGGTCTGTTTTACATGCTGCTCTCAGAAATTCGGAATAAGTGGGGGCTGCGGATGGAGCATTGTCGAGGACTTACCTACCTGACCACAGGTGGTTTATGTCAGAAAATGAAGGATCTCACCAGCAGGATTCTGCAGGAGTTTCCTCAGGTAGTGCTAGCACCTAGTGACCCATATGCCTTTAACATGTGGCTAATCCGCTCCATGCCCATACCTTATATCCAGAAGGTTGTGAACACAGTGGAGGACGTTGCCAAAATAATTAGAGGATCCCCAGATCTTTGGGAAAGACTGGAGGTGAAAATCAAGTCTTCATACAGCCACCTTAAAGGTGAAGTGGACAGGATCATAGAGGCTTCCCAGAACACCTGGGAGTATGGTGTTGATGCCTTCCAGACCATGTTGGACATTCTTGAACCATTCCTCGCCTGCATCAACGAGGTGTGCTCGGCTGCGAACGCAGACACCGCTACTTGTGAGCAGATGGCCAAGCTCAAGCCGATCCTGAAGAACTTCAATTTCATTATCACCCTGGTTGTTCTGAAGAATACCCTCTGTTGCGTGAGTATCCTCAACCCGAGTCTCAGGGGAGCCATCAGCATCAGCAGCACCTTGCAGTACACAATCTCCAACGCCTTAAAGCTGGTCAACAAACATCTGCAGGAGATCGCAATATTCCACAGGAAGTGGTTTTCTGATGCAGTGGGCAGGGCTAAGAAGCTGGGAGTGGAGGTTGCTAGGCCGGATGAGAGCTCACCTGAGACTGGCGAGGCAGTTGCAACTGAAACCCCTCTGGAGGATTTCTACAGAGAGACTCTGAGCAGGCAGATCTTACAGTACCTTGTTGCGGAGGTAAAGAGGGTGTTCAGCACGGAGATGGTACGGATTCTGAGATGGCTCTCATTGGTGCCGTCTTACATGGCTGACCACAATTTCAGTATCCGCAGGGATAAAGTGGCGGACGCAAACTTGAACAACCTCGCTCGGCCCGACACCTTTTACGATGAGCTTGGTTGCTGGGAGGTGAAGTGGAGACATGCCAGCAAGCGGAGGATCCTGCCCACAACAGTGTTTGCAACATTGAAAATCCCAGACATTGCATTTTACCCAAATGTGCAGAGCCTGCTGAGAGTTTTGGGCACCATCCCCTGTGTGAACGCAGAGGCAGATGTGTATGGGCAGTACAACATGGTGCTGGAGCGGTACCAGTCTTACCTGAAAGCCACACCGGAGGATAAGAGACTGTGCAACATGGCATTTGTCTATGTCAATCAAGACGTGCACTTCAATGTGGAAGACATGGTTGAGTCCTATGTGGAGAAGCATATTGACATATTGCAGTTTTTGCATATGGATGATGAGGTAATAGAGATGCAGCCTGACGCTGAACCTGTCTCTGAGAATGATGGGAATCACACTCTAAAAGAGAATGTACAAGAAACACAAGAAGAACCACAGGACATACCCTCTGAGATGGAGACCGAGAGAGTGGGGCAACCGAAACTCCCAGCCACAGAAACTAATAAGGAGGCACTCAAATCTGCTCTGCAGGTTGCTGTGACAGCTGCATATAACAGCCAGAGCAGACAGCCTGGTGAGGCCTCTGCTGAACAGGATGGCGAGGTGGAAGACTCATTGAAGTATGTGTCAAAGTCTGAGATGGAAGAAGTTCTTAGAGTATGCGAGGATGCTGTCAGGGAGGGAATTCTTGTGGAGGTGGGCACTTCCTTTTTTTCTCTGTTCATCGACCGTGTTGTGAAGTTAGGGGAGAAAAaacatcttcctctcttcctcaggTTTGTGGACAGTTTTGATGTCATGCGATTGGAGCTCATGGGATTTCTGGATGTGGATCTTGACTGTGATGCCATGTCAGAGCGCATATTGGAAATTGTCACCAAAGAGTGGCATCTCGATTTGTGTTACTGCAGAGGTCAGGCCTACCTAGGGTCCGGTGATGTCTCCTACAAGCTGAAAGCATTTGCCTGCAAAATCCAAGAAAAGTACCCCCTTGCAATATGCACACACTGCTCTTGTTACTCATTTAACATATGGTGGTCAAAATCCACCCCTGTGTCATCAGTCAAACGGGCCCTGGATGTTTTTGAAGAGGTTTTGATGTTTTTTGGGAGCATGCCTATGCTTGAGAAACAACTGGATCATGTCATTGCATTTGGACTTAGGGAAAGCTATGAAAAGGTTCAAGAATTGCAGGGGAAGTTCTGTACCGTCTGGCAGGAGAAGCATGATTCCTATGAAGTTTTTGTGCAGATGCTGGAGCCCCTTGTCGAATGTTTGGAGAAAATCAAGAGCAACCCACAGAGGTGGAAATCCTCATTCTCTCTAAAAGCTGGAGCACTGCTGCGTTTGATAAGGGACTTTGATTTTATTGTGCCCATGGTAGCCCTGAAGAACACCTCGTCCTTCACCAGGGAACTGAGTGCAGGACTCCAGAAGGATCATTTCAGTGCAGCATCCCAACTCTGCCAGATCAGTGGTATAGTGGCTACTCTTAACAGGGTCAAAACAAACATCAAAGTATTTCACCAGAATTGGTTTGATGAAGCTTGTGCGCTCGCCCAGAGTCTAGGTGTGCAGATAAAAGTGCCTGATAATTCCTCTGCGTCCAGGGATAGCATGATGAAACCAGCTCTGTATTACAAAGATGCACTAAGTGTGCCCCTAGTGGACAACCTCACCAATGCTGTTAAGGATCATTTCTCTGAGGACCACAAGGAGGCCCTAAACTTCCTCTCCCTGGTTCCCTGCTCTGTGACTGTGAGTTACATGTTTGAGATCCTGAGGTCAAAGCCTCCTCTCTACGCCAGTGATCTGCCTGACTCCGACAACTTCTTCACTGAGTTGTGCTGCTGGAGGGTGAAGTGGAAGACCAAAGTTGCATCCGTGACCATCCCAGACACTATCTTTCAGACTCTCCGTCTGCCACTCATGCAGTACTTTGGGAACATCAACACACTGCTGAGGATCATGTCTGTGCTACCCAGCACAGTACTGGAGAACTGTGGGGAAGTGATGCGCCACAAGATGTTCCAGGAATACCTGAGGAACACCAGCCCCAAGGACAGGTCCCCATGTCTGGCCATGCTGCAGGTGGGAACCAACTTCAGCAGAGATCTGGACCGGATGGTGACTAAGTGCTTGAAGGTCACTCCGCAGGCTTTAGAGGGCATCTGCTTGGATAAAGAATCCAAAAGTCTGATGAAGAACTCTGAAGCCAACATGGAAGTCGATCATGGCAAAGATGGAACAAAGGACCTTGAGAATCAGTCTTCTGACAAGAAAGAGAACCAGGAAATGAAAGCGGTGGATGAGAATGGGCACACTGGAGATAATCGACAGAGTTTGGAAATGGTTTTCAGACTGGCTGCACGTCTAGGGAAAAAGAAGTGTCAGCTCTCCGAACTCTCCAAAGAAGATCAAGTCCTTCTCATCCAGGATCTCGGCCTGTGCCACTGGTTTGGAAGAGATGGCAAGTTCACGCTTAACGTAGGAGAGGAGGAAATGGTAGAGCTTCTCACAAAATCCATCAGGGAAGTCATACTCTTAGAAATACAGGAGTCCCCCTTCTTTTCTCTTATCACAGATAAACCTGTTGTAATTGCTAATAAGAGCTATCTGCCTGTCTTTGTCAGATATGTTGGGGAATGTGCCCCCAAGGTAGAGCTCATTGGTTTTTTGCGATTTTTTGAAACCTGTGACGTTGATGTTCAAGTCAAGAATCTTTCAGCAACTATAATCGAAGACTGGGGATTGCCGATGAGTCAGTGTCGTGGACAAGCATTCATGCGCATGGGCTCAGGTTGTCACAGCCTGAAGAAGATGTCTTTGGAGTTCCTCGAGAGCTATCCTCTGTCTGTCATCACACCCAGTGAGTCTTGTGGTCTTGCCTGTTGGCTAGCAGGAAGTGTACACTGCCCACCTGTCACAAAGATGCTGGGAATTGTGGAAGATCTTCTACTGTTCTTTGACCAGTCACCTGGTCTAGAGGCAGAGCTAGCACAGGCCGTGGATGGGTTACTGAATACACCTCGGGAGGCCTTGGAGGAGATTCCAGAAACCTGTTGCTCCAGGTGGAAGAAGAGGGAGGACTTTTTTGATCTCCTAGTCGACACATTGGAGGGAGTCTTGAGTTGCCTGGATTCAGTTAGTTCCAGCGCCACGGGCACTATGTCGCTACATGCACAGGTCCTCGCCACTGCTTTGAGAGAGATGGATTTTGTCGTCACACTTGTAATCCTGAAGAACGCATGTTCTCCTCTTCGAAACTGCAGCACTGTTTTCCGCTGTGGTAACCCTGCTGACATCATCTGTGAGGTGGAGAAGATCGTACCAATCATAGAGACACTGAACAAGATGTTGGAGAACATAAgcactgtacacacaccttgGTTTGAAGAGGCATTCCAACTAGCATCCAAGGTGGCCCCTCAGCAAGTATGTTTCCCAGAGGAAGCTAACTCTTATGAGTCTCCAGAGGTGTACTACAGGGACAACTTTAGTGTTCCTGTACTGCGCTGCCTCATTGACGAAATGAAGTACAACTTCTCCGACAGTCATTTGAAAGCCTTGAAGCTCCTGTCTCTTCTTCCCACCTGCAATCCACAGCCCATTTCAGAGCCAATCCGCGCAGAGTCCACAGATAAGCTATACAGTCTCTACCTGTCTGACCTCCCTGATCCTGACACAGTAGAGCAGGATATCAGTAACTGGGCCACAGTGTGGAAAGATAAATATCAGGACATGTCACCACCAGCTTCTATCTCTGAGATACTGCTTCACCCAGAATCTCAAAGCCATCCCACAGTGACAATGCTGCTCAGACTGGTGGCTGTTCTACCGAGCGTCAGTATGGAGTGGGACCTGATGAAGACCACCCTGAACTCCATGAGGGCTCTGCTGAAGAGCACTGTCTGCAAGGGCAGCAAAACCGACACCGTGATGCTTCTCATGCATTACCCAACTGTTCAAAGACTAAGGGAGGTCATTGAGAAGTGCATCGAAGTTGACCCAGAAAGCATCCCATGTCTTGAGCAGGTGAAGAAACAAATGAAAGGTCTGAAGCTGGAAAGTGATTTCAGAGCTTTTGATGTAAACCCTGATGAGAGACATGAGCAGACAGTTGAGGAACACCAAGCTGATATGGCAGAACAACCCCTTGCTGGAGAGTTGCAAGAGGAGGACGGCGTGCTGATGGCGGAGGACGGCGTGCTGATGGCGGAGGACGGCGTGGCGCTGGTGGCGGAGGACGGCGCGGCGCTGGTGGCGGAGGACGGCGCGGCGCTGGTGGCGGAGGACGGCGCGGCGCTGGTGGCGGAGGACGGCGCGGCGCTGGTGGCGGAGGACGGCGCGGCGCTGGTGGCGGAGGACGGCGCGGCGCTGGTGGCGGAGGACGGCGCGGCGGAGGACGGCGCGGCGGAGGACGGCGCGGCGCTGGTGGCGGAGGACGGCGCGGCGCTGGTGGCGGAGGACGGCGCGGCGCTGGTGGCGGAGGACGGCGCGGCGCTGGTGGCGGAGGACGGCGCGGCGCAGGAGGGCGCGGCGCAGGAGGGCGCGGCCCAGGCGCAGGAGGGCGTCGCCCAGGGGCAGGCGCAGGACGGCGTCGCCCAGGGGCAGGCGCAGGACGGCGTCGCCCAGGGGCAGGCGCAGGACGGCGTCGCACAGGGGCAGGCGCAGGACGACGTCGCCCAGGGGCAGGCGCAGGACGGCGTCGCACAGGGGCAGGCGCAGGACGGCGTCGCGCAGGGCGCCGTTGCCCAGGGGCAGGCGCAGGGCGGCGGCGCGCAGGACGGCGTCGCACAGGGGCAGGCGCAGTACGGCGTCGCACAGGGGCAGGCGCAGGGCGGCGTCGCCCAGGCGGAGGATGGTGTTGTAATGGTAGAGGACAGGGTCGTAGGTCAGAGGCAGGCTATGTCTTTCTATGACCCACCTGTGCGTGAGGAAATACTTAAGGAACTCTGGGACTCACAGTTCTTTACAATAATAACGGAACAGGCGGTTGAGATTGAGGGACAGCTCTATGTCCCCCTGTGCATCAGGTACTTGGACAAACAGGACACTCAATGCGAGGAGACTGTAGCTTTCATCCCGTTCAGCCAGGACACTGCTGTCTTGGCTGATGCTATTGAAACAGCCCTATCAGAGAAATGGGGGCTCAATATGGCATACTGTAGAGGGCAAGCTTTGCTAAGTGTTGGTGAGGTAGGATCTCGGATGAGAGCTGTATCTGCTGTAATAGCCCAGAAATACCCCCTGGCCATGCAAATGGTCAGCTCTGCTGTGTCTCTGAATGTGTGGCTAGCCAGGTCATCTCCTGCAGTGGCAGCAGCAGACTGTGCAGTGTCTGTAGAAAACATGTTACAGTGGCTCACAGAGGATGCAGAACGACAGATCAAACTGGAAGAGGTGATCATTGCCATATTCCAACATGATGAGGGGAAGGGTAATGAGCTTAGGGACAAGCTTATTAAGAACTGGGAGAAGAGTCATGATATGCATGATTTGATGGTAGAGCTCCTGGAGGTAGTCATGCTGTGCTTGAATGAGCTGAAAAGTGAGGAGAATAGCTTAGGGAGTGGCCAAGCACTGCTTTACTTCGATAAAGTCAGACGTTTTGAGTTCATCTTCACGGCTGTCGTGCTGAAGAATGTCCTAAGCTCGACCAAAAAGCTGAGCCAATCTCTTCAAGGAAAACCCCTAGATGTGTTGCTAGCTATGAATAGCTTGCCCGATCTCCTAACTTCCCTCAATGAATTGAAGAGCAATATCGACACACATCACAAGGCCTGGTTCAAGGAAGCTGTCTCTTTAGCTTCCAAGCTGCAGATAACGTTGTTGCACTCTGCGCTGCTAGAACCCCTGAGTCAGTTTTACAAAATGGCGGTGAGTCAGAAGGTGATAGAGCACTCCATTGCTGAGGTCAGTGAGTTCTTCACAGAGAAGGTCCTCAGTACCCTGAGGTGCCTGGAGATTGTGCCTTACGCCATGTCGAAGCTAGAAAACAGCAGTGTAAATGCTCACGTTTTACGCATGTACAAAGATGACATGCCTGACCTGGTCTCACTCCCAACAGAGATGAAGTCTTGGAGAGAGAAGTGGTTGGATCCCATGTCCGGGTATCTTCCAGCCACTGTACTCGACACTCTGAAGGCATCAGACATTAGGAGCTTTAGTAACATTGAAACCCTCCTAAGACTCCTGGTCATCCTACCATTTTCCCGGAGGGAGAGTACCTTCAGGCAGGGAAAGAGAAGCCTCCAGGGGTTCATACAACAGGAGACCAGGTCTCTTTCTGAACTTCATCCTCTGTAA

Function

NR:

description
uncharacterized protein LOC109891803

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939504.1 True 8181 mRNA 0.51 12 31971901 31995685

Neighbor

gene id symbol gene type direction distance location
LOC110537456 LOC105010978 coding upstream 2959 31961376 ~ 31968942 (+)
LOC110537455 LOC106567942 coding upstream 10985 31955273 ~ 31960916 (+)
stt3a stt3a coding upstream 39263 31917035 ~ 31932638 (+)
LOC110537452 LOC106567936 coding upstream 55674 31905481 ~ 31916227 (+)
LOC110537450 LOC106603546 coding upstream 82446 31864334 ~ 31889455 (+)
LOC110537457 wnt11 coding downstream 9469 32005154 ~ 32027744 (+)
LOC110537461 LOC106567950 coding downstream 356067 32351752 ~ 32382873 (+)
LOC110537463 LOC106567953 coding downstream 408630 32404315 ~ 32410155 (+)
LOC110537465 LOC106567954 coding downstream 420772 32416457 ~ 32438081 (+)
prdm15 LOC106567952 coding downstream 442633 32438318 ~ 32454813 (+)
G1060536 NA non-coding upstream 67808 31903347 ~ 31904093 (+)
G1060535 NA non-coding upstream 69305 31902373 ~ 31902596 (+)
G1060533 NA non-coding upstream 73177 31898521 ~ 31898724 (+)
G1060531 NA non-coding upstream 76490 31895157 ~ 31895411 (+)
G1060602 NA non-coding downstream 65315 32061000 ~ 32080346 (+)
G1060718 NA non-coding downstream 308519 32304204 ~ 32321208 (+)
G1060911 NA non-coding downstream 617565 32613250 ~ 32614551 (+)
G1060932 LOC106567958 non-coding downstream 664007 32659692 ~ 32660196 (+)
G1060470 NA other upstream 160554 31811062 ~ 31811347 (+)
G1059685 LOC106567926 other upstream 762544 31207629 ~ 31209357 (+)
G1059091 NA other upstream 964835 31000227 ~ 31007066 (+)
LOC110537434 NA other upstream 1092790 30848508 ~ 30879117 (+)
G1058787 LOC106567901 other upstream 1455011 30516081 ~ 30516890 (+)
G1062404 NA other downstream 1364049 33359734 ~ 33366249 (+)
G1062537 NA other downstream 1512634 33508319 ~ 33508863 (+)
G1062648 NA other downstream 1662593 33658278 ~ 33661949 (+)
ubb ubb other downstream 2771339 34766968 ~ 34770882 (+)
LOC110537506 LOC106567992 other downstream 2980607 34964222 ~ 34982028 (+)

Expression


Co-expression Network