LOC110537457 (wnt11)


Basic Information

Item Value
gene id LOC110537457
gene name wnt11
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 32005154 ~ 32027744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623518.2
TTGAGGCTGCCCCACTGCCATGAGTCCAACACATTCCGCAGCGAGAGGCACTGCACGCTGAATAACCTGCGAGAGAGAAGAGGTAGCCACTGTTGCTGGGGAGTAAAACGATGCTTACTTCTTTGGATTCATTTGAATTGCGAAATTGTGGATTTATACGAATTTGTGGAGGATATTGAATTCAAAAGGATATTACACTGACACGAATCATCATTAAAGgggaaagaggggaagacgGTGTCATGGCAGTTGACTTGTGATTGCACCTATAAGAGCCTAAAAGCCAACAGCCACCTGCATTACTGTCATCTCTAAGTTGGAACACTATCATTATGAAGAAAACGTCTAacaccctcccactctgtctgcttaCCATTCTGCTGCTGTCCCAGATCTGCTCCGGCATCAAATGGCTGGCCCTATCTCACACACCCACGTCCTTACACATCAACCAGACCCAACACTGCAAGCTGCTGCCCGGCCTGGTGTCGTCACAAGCCCAACTGTGTCGGAGCAACCTGGAGCTCATGCAGACCATCATCGCCGCAGCACGCGAGGTCAAGAAGACCTGCCAGAAGACCTTCGCTGACATGCGCTGGAACTGTTCCTCGATTGAAATCCCCAGTGACTCCTCGAGGTATCGTCCAGATCTTGACAGAGGCACGAGGGAGTCAGCGTTTGTGTATGCCCTGTCTGCGGCGGCCATCAGCCACACCATAGCGCAGGCATGCACGTCGGGGGACCTGCGCCTGTGTTCATGCGGCCCCATCCCCGGGGAGATCCCTGAGCCGGGCTACCGCTGGGGCGGATGTGCAGACAACCTGCACTATGGCCTGGTCATGGGCTCCAAGTTCTCTGACGCCCCGATGAAGATGAAGAAGGCAGGCTCCCACGCCAACAAGCTGATGCATCTGCACAACAGTGAAGTGGGGAGACAGGCCCTGAGAGATGCGCTGGTGATGAAGTGTAAGTGTCACGGTGTGTCTGGCTCCTGCTCCATACGGACCTGCTGGAGAGGCCTGCAGGACCTGAAGGACATTGCCATTGACCTGAAGACCAAGTACCTTTCAGCCACTAAGGTGGTGCACAGACCCATGGGTACACGCAAGCAGCTGGTCCCCAAGGACATTGACATCAGGCCCGTCAGAGAGAACGAACTGGTCTACCTGCAGAGCTCTCCGGACTTCTGTACCAAGAACGACAAGCTGGGTTCCGTCGGCACCCAGGACAGGCAATGCAACAAGACGTCCATCGGCAGCGACAGCTGTGACATGATGTGCTGTGGGCGTGGCTACAACCCCTACACAGAGAAGCTGGTGGAGCGCTGCCACTGCAAGTACCACTGGTGCTGCTATGTCACATGTAAAAAGTGTGAGAGGATTGTGGAGAGATACGTCTGCAAATGAGTCCATGTTGTCTActtcatccacccacccacctaacCGCCCCACGTCTATGTGCTGGGGCTACAGATAACCAAAGCACTACGTTACCAAGAAGGCTTACTTTTGTCTTAAGCTTTAGCATGTATATTTTGACAagaaagtgtttatttttgttcattcTTTTTAATTAAACTCTGACTCACAAGCTGGACTTAAAACCTTTTCCATTTTACGAACGCGGACACATGGGTGTTGTGACAATGCCTATTGGTTTACGTGAAGGCCACCGTCCTCGAGGATTTTTTCTTTCCTTTCATAAATGTGCATTACACTTGCCGTACTCGGATATCAAATGTCTATTTTCGTATATACTTTTATTCAAATAAATGATATTGGATTTGTTTTTTGAGGAGAGGGACTGTAGTCTCCTCGTTTGCTGTTGGGGGTATACTTCCAACCTCACTCTGATGTTGACACTCACCGTTTACTTCAGAACCATTCCACGGAATTCAAAGGGTTCTGAAGGATCCATGGTGTTTTTCCTCAAATGGTAGTCCTTTTTTCAACAGAGACAGAcactgaaagaaagagagggaaatcGTGCTCAACACACAAAGGGAACTTAAAGTACTTTTAGTTGTGGAACTTTTAGTAACTGGTATTGAACTCTTGAGCACTGGAGCTTGACTGGGGACTCGCCTGCAGACACACAGTTCTGTGTGCATCGTCAGGATAAGGACAAAGAACTCCCAGTGTTAGAAACAGCACATTATCCCTAGAATGTCTGACATGCAGGTAGTCCAAAGCCTAACACTCAGAGCATGTGAACGGAACACATGGGTCTCCTTTAATGCCGTGTTATGATGAACCACTCTTATGTGGCTGTACATACTGTCTTTTTGTATGCTGAATTAAAGAAAGAAATATTTATAAACTAATTATAGACTCTTTAACAAGCTCtccattttttattttcccaAGACCGCAACTCATCATCATGGTGAATTTTCTTTTTGTAATTTAAAAGAAACTTGGCAAGAGAAATATGTAACCTCACAGGCTGGTGTTTTTGAAATAGACTAGCTATATTTCTTCCCCCCGAAGCATTACTGTAATTAATGACATCTCAAAGTGTTAAGAAAATAACCGTTTCACACAATGACCTGTGACTGTGAGATAAATGCGCACACTTGTAATGTGTTTTAGTTTTCAATCAGAAGGCCAATTGGGATCAACCTCTCAATTACAAAAACCCTGGGAAAGTGTTTGTTTGGACATTCTTCACTGTCACAAGGGCTATTAATTATGATTCTATCATGGGTTTAGCCTAACCCACAAACAATCATCTGGATGAGAAGAGATCTTGGATTGGGCTAAACTTCCAATTAaaaaacaaggcaacagtaaacatgttgcTCCCCACCTTTCAGAGTTTGCATTTTCAATCTCTTGTTATAGCGCCACTATCTgaccaatcagtgtaattttgtaaacaGCGGATCTCTATGGAAAACGCATCATTCACCAAAGTTTCGTAAAAatctgtttagtgttgtctgaGACTAATGTACGAACAAAGGACAGATGGATGGTGACAGATCCACAATCCTCTCCCTGATTTCATCGTGGGAACAACAAAAATAAATCTAATTTATTTTCATACAAAGGGTTACATTTTTTTAGGTTGTTAGTCAAAGGAACAGATCTTGGCAGTTGGCACTCTATAAGGCAGAAGTATAACCCACTGACCAAGCCTTGTGTTGCTTTGTAGTTTTCATGATTCTGAACAGACAGAAATAACTAACTCTTGGCCCATGCCGAGGCTCCAACCTAATCCAGCCGAGCATATGTACCGCTATTGACCTAGCCCGCTTGTGGGAGCAAACTAGAACACTATAGA

Function

symbol description
wnt11 Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within embryonic morphogenesis; neuromast development; and pharyngeal system development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including cardiovascular system; fin; mesoderm; nervous system; and pharyngeal arch. Orthologous to human WNT11 (Wnt family member 11).

NR:

description
protein Wnt-11-like

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K01384 WNT11; wingless-type MMTV integration site family, member 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623518.2 True 3285 mRNA 0.46 6 32005154 32027744

Neighbor

gene id symbol gene type direction distance location
LOC110537454 LOC106567941 coding upstream 9469 31971901 ~ 31995685 (+)
LOC110537456 LOC105010978 coding upstream 36212 31961376 ~ 31968942 (+)
LOC110537455 LOC106567942 coding upstream 44238 31955273 ~ 31960916 (+)
stt3a stt3a coding upstream 72516 31917035 ~ 31932638 (+)
LOC110537452 LOC106567936 coding upstream 88927 31905481 ~ 31916227 (+)
LOC110537461 LOC106567950 coding downstream 324008 32351752 ~ 32382873 (+)
LOC110537463 LOC106567953 coding downstream 376571 32404315 ~ 32410155 (+)
LOC110537465 LOC106567954 coding downstream 388713 32416457 ~ 32438081 (+)
prdm15 LOC106567952 coding downstream 410574 32438318 ~ 32454813 (+)
LOC110537467 LOC106567956 coding downstream 430727 32458471 ~ 32471371 (+)
G1060555 NA non-coding upstream 25549 31979194 ~ 31979605 (+)
G1060536 NA non-coding upstream 101061 31903347 ~ 31904093 (+)
G1060535 NA non-coding upstream 102558 31902373 ~ 31902596 (+)
G1060533 NA non-coding upstream 106430 31898521 ~ 31898724 (+)
G1060602 NA non-coding downstream 33256 32061000 ~ 32080346 (+)
G1060718 NA non-coding downstream 276460 32304204 ~ 32321208 (+)
G1060911 NA non-coding downstream 585506 32613250 ~ 32614551 (+)
G1060932 LOC106567958 non-coding downstream 631948 32659692 ~ 32660196 (+)
G1060470 NA other upstream 193807 31811062 ~ 31811347 (+)
G1059685 LOC106567926 other upstream 795797 31207629 ~ 31209357 (+)
G1059091 NA other upstream 998088 31000227 ~ 31007066 (+)
LOC110537434 NA other upstream 1126043 30848508 ~ 30879117 (+)
G1058787 LOC106567901 other upstream 1488264 30516081 ~ 30516890 (+)
G1062404 NA other downstream 1331990 33359734 ~ 33366249 (+)
G1062537 NA other downstream 1480575 33508319 ~ 33508863 (+)
G1062648 NA other downstream 1630534 33658278 ~ 33661949 (+)
ubb ubb other downstream 2739280 34766968 ~ 34770882 (+)
LOC110537506 LOC106567992 other downstream 2948548 34964222 ~ 34982028 (+)

Expression


Co-expression Network