LOC110537461 (LOC106567950)


Basic Information

Item Value
gene id LOC110537461
gene name LOC106567950
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 32351752 ~ 32382873 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937404.1
GGGCGGGGCAGACTTCCCTTGCAGTGTCCTGTCGTAGTGCAATGTGCATGACGGGACAGAACGGGCAGAGCTGAGAGCAGCGCAAAAGGAAAACATCCGAGACAGTAATCTTTATATTTGGATCATGGATTTATCATTCGTCTATTATCGCTAAACATCGAAGATTGCACCATTCAATAACTCGGACATTTTGTTCCTCTTTAGCAGGATACCGGGGCCCATCAAGAGCCGAGGAGAGACAGTAATTTTCCCTGCTCGGATCCGTGGCATTTGAAGAATTGTATCGCGCGCAGGAGCTGAGCTATAACCGACATCATGGCGTGGCCCTGCATCACCAGGGCGTGCTGTATGGCCCGCTTCTGGAACCAGTTGGACAAGGGGGACATTTCTGTGCCATTGGTTTTCACCAGGTACGATGTCTCGGAGATGCAGCATCTTAAGCTGCAGCACCAACAAAAACAGCCGCATAACCAGGCACAAACGAGTGCAGTCGCCATAGAAACGCAACCCATTCACAGCGACCAGGCGGTAGCAGCTCGTGCGAACCCCGGTATCGCTGCGTCTGGGGAGCGCGCGTGTGGTTCTGTAATGCGGCAAGACTTTAAGCACTGGAAAGTGCGTCCTGAGCCATCCTGTAAACCTAAGAATGAATATCACACTCCCGAGATCCCTTTTAATAACAAGACACAATATCAGAAGGATTTCCAGCCGTGGCCCATTCCAAAAAGGAGTGACCATCCTTGGATTCCCAGACCCAATCCATCCATCTCCATCGGCGATGATCGCGTCCAGGATAGGTCCAAACAAGCGGAGGTTGACATCGGTGTAGAGAAATGCGAAATTGCTGACAAATTGCACGAAAAGGAAATCCTCGGAGGGAGTAAAAATAATCTATCTGCAGAGAAGGAGGGTGAAAAGAAAGTTAGCATCAAAGTGGAGCGAGAAGACGCGGCAGGGGCCAGAGGCAGGGCGGCACTAGATGCGCTAAACAGGCAGTTAAAACAGGAAGTTACTGGTGGCAGCTCATACAAGACAGAGTTCAAAGCCCACAGGGATGTGAAGCCAGTGAAGCTGATCCGAGCCAAGTCCCAGTACCTTCCCCCTGATGAGAAGACCAGCCTGGAGACCAGCTATAGCGCCACCTACAGGGGAGAGCAGGGCAAACAGCAGCCCAACGACAACAAGGCTGTGGACAGGAGGAGGATACGCAGCCTGTACAATGAGCCCTACAAAGGGCTACAAGAGACCAAGGTTGAGAGGTCTAACAGTGCTCCCCGATCCAAACCCAAAAAGGCGGGCGCCACGGTAGCTAGTCAGGGCGGCAAACCTGTCAAGAAGGCCAAAGAGCAGAAGCAGCCGGGCAGCACAGCACTGCGGGGCACCAAGAAAACGACCTCTGAGAACCAGCCCACTGAGTCCAGGCCTGCGGTGGGGGACAAGGAGAAAAGTAAAGAGATGAACAACAAACTGGCTGAGGCAAAAGAGGTTGTGCTAAAACAGTACCACTACATACAGCTCTGTCAGCCAATCCGTGATACAGGCTGGGTGCAGACGCTAAAGCAACACCTGTGGGGCTGTACACTACCCATTCCAAGAGAGCTTAATGACGAGGTTCTCCGACCCGGTGATCATCATTCCCAGGGTGCCGTTGGAGGAGAACCAGAACCACTGGAGGAAAGACCCGAACCACGGAGGAGCGGCGTAGTTGTGCACTTTGCCCCAGATGTAAAGTATGAGTAGATCCACTAGATCTGTACTGTAgggacatactgtactgtaggcctatggtATACAGGGAGGAACTGCtgtcctgttctgtactgtacatatatagtATTTTCAATTCAGTTCTATTGGGAAAAGAGAAATACCCCATTAACAAGTCCTCTGCGTGAGGAGGCTAACCAAAATAGGATGCACGTAGCGTGTTTGAAACAGCTTTAGGGCAGTGCGGTCATAGCTGTTTGAGCAAATGCAAATGCAAAAGGTGCTATAAGTTTAATTTCCGTTTCATGCTTTTGTTTTAAGAGAATGTTTTCATTTGGTAATGATGTTAGAAATGCCAAACCATAAAGTGCttattgaaagaaaaaaaagaactgTATATTGATCAATTCAAAGGCAAATAAATATAGATAACTTGCTGA
>XM_036937405.1
GGGCGGGGCAGACTTCCCTTGCAGTGTCCTGTCGTAGTGCAATGTGCATGACGGGACAGAACGGGCAGAGCTGAGAGCAGCGCAAAAGGAAAACATCCGAGACAGTAATCTTTATATTTGGATCATGGATTTATCATTCGTCTATTATCGCTAAACATCGAAGATTGCACCATTCAATAACTCGGACATTTTGTTCCTCTTTAGCAGGATACCGGGGCCCATCAAGAGCCGAGGAGAGACAGTAATTTTCCCTGCTCGGATCCGTGGCATTTGAAGAATTGTATCGCGCGCAGGAGCTGAGCTATAACCGACATCATGGCGTGGCCCTGCATCACCAGGGCGTGCTGTATGGCCCGCTTCTGGAACCAGTTGGACAAGGGGGACATTTCTGTGCCATTGGTTTTCACCAGGTACGATGTCTCGGAGATGCAGCATCTTAAGCTGCAGCACCAACAAAAACAGCCGCATAACCAGGCACAAACGAGTGCAGTCGCCATAGAAACGCAACCCATTCACAGCGACCAGGCGGTAGCAGCTCGTGCGAACCCCGGTATCGCTGCGTCTGGGGAGCGCGCGTGTGGTTCTGTAATGCGGCAAGACTTTAAGCACTGGAAAGTGCGTCCTGAGCCATCCTGTAAACCTAAGAATGAATATCACACTCCCGAGATCCCTTTTAATAACAAGACACAATATCAGAAGGATTTCCAGCCGTGGCCCATTCCAAAAAGGAGTGACCATCCTTGGATTCCCAGACCCAATCCATCCATCTCCATCGGCGATGATCGCGTCCAGGATAGGTCCAAACAAGCGGAGGTTGACATCGGTGTAGAGAAATGCGAAATTGCTGACAAATTGCACGAAAAGGAAATCCTCGGAGGGAGTAAAAATAATCTATCTGCAGAGAAGGAGGGTGAAAAGAAAGTTAGCATCAAAGTGGAGCGAGAAGACGCGGCAGGGGCCAGAGGCAGGGCGGCACTAGATGCGCTAAACAGGCAGTTAAAACAGGAAGTTACTGGTGGCAGCTCATACAAGACAGAGTTCAAAGCCCACAGGGATGTGAAGCCAGTGAAGCTGATCCGAGCCAAGTCCCAGTACCTTCCCCCTGATGAGAAGACCAGCCTGGAGACCAGCTATAGCGCCACCTACAGGGGAGAGCAGGGCAAACAGCAGCCCAACGACAACAAGGCTGTGGACAGGAGGAGGATACGCAGCCTGTACAATGAGCCCTACAAAGGGCTACAAGAGACCAAGGTTGAGAGGTCTAACAGTGCTCCCCGATCCAAACCCAAAAAGGCGGGCGCCACGGTAGCTAGTCAGGGCGGCAAACCTGTCAAGAAGGCCAAAGAGCAGAAGCAGCCGGGCAGCACAGCACTGCGGGGCACCAAGAAAACGACCTCTGAGAACCAGCCCACTGAGTCCAGGCCTGCGGTGGGGGACAAGGAGAAAAGTAAAGAGATGAACAACAAACTGGCTGAGGCAAAAGAAGAGCTTAATGACGAGGTTCTCCGACCCGGTGATCATCATTCCCAGGGTGCCGTTGGAGGAGAACCAGAACCACTGGAGGAAAGACCCGAACCACGGAGGAGCGGCGTAGTTGTGCACTTTGCCCCAGATGTAAAGTATGAGTAGATCCACTAGATCTGTACTGTAgggacatactgtactgtaggcctatggtATACAGGGAGGAACTGCtgtcctgttctgtactgtacatatatagtATTTTCAATTCAGTTCTATTGGGAAAAGAGAAATACCCCATTAACAAGTCCTCTGCGTGAGGAGGCTAACCAAAATAGGATGCACGTAGCGTGTTTGAAACAGCTTTAGGGCAGTGCGGTCATAGCTGTTTGAGCAAATGCAAATGCAAAAGGTGCTATAAGTTTAATTTCCGTTTCATGCTTTTGTTTTAAGAGAATGTTTTCATTTGGTAATGATGTTAGAAATGCCAAACCATAAAGTGCttattgaaagaaaaaaaagaactgTATATTGATCAATTCAAAGGCAAATAAATATAGATAACTTGCTGA
>XM_036937406.1
GGGCGGGGCAGACTTCCCTTGCAGTGTCCTGTCGTAGTGCAATGTGCATGACGGGACAGAACGGGCAGAGCTGAGAGCAGCGCAAAAGGAAAACATCCGAGACAGTAATCTTTATATTTGGATCATGGATTTATCATTCGTCTATTATCGCTAAACATCGAAGATTGCACCATTCAATAACTCGGACATTTTGTTCCTCTTTAGCAGGATACCGGGGCCCATCAAGAGCCGAGGAGAGACAGTAATTTTCCCTGCTCGGATCCGTGGCATTTGAAGAATTGTATCGCGCGCAGGAGCTGAGCTATAACCGACATCATGGCGTGGCCCTGCATCACCAGGGCGTGCTGTATGGCCCGCTTCTGGAACCAGTTGGACAAGGGGGACATTTCTGTGCCATTGGTTTTCACCAGGTACGATGTCTCGGAGATGCAGCATCTTAAGCTGCAGCACCAACAAAAACAGCCGCATAACCAGGCACAAACGAGTGCAGTCGCCATAGAAACGCAACCCATTCACAGCGACCAGGCGGTAGCAGCTCGTGCGAACCCCGGTATCGCTGCGTCTGGGGAGCGCGCGTGTGGTTCTGTAATGCGGCAAGACTTTAAGCACTGGAAAGTGCGTCCTGAGCCATCCTGTAAACCTAAGAATGAATATCACACTCCCGAGATCCCTTTTAATAACAAGACACAATATCAGAAGGATTTCCAGCCGTGGCCCATTCCAAAAAGGAGTGACCATCCTTGGATTCCCAGACCCAATCCATCCATCTCCATCGGCGATGATCGCGTCCAGGATAGGTCCAAACAAGCGGAGGTTGACATCGGTGTAGAGAAATGCGAAATTGCTGACAAATTGCACGAAAAGGAAATCCTCGGAGGGAGTAAAAATAATCTATCTGCAGAGAAGGAGGGTGAAAAGAAAGTTAGCATCAAAGTGGAGCGAGAAGACGCGGCAGGGGCCAGAGGCAGGGCGGCACTAGATGCGCTAAACAGGCAGTTAAAACAGGAAGTTACTGGTGGCAGCTCATACAAGACAGAGTTCAAAGCCCACAGGGATGTGAAGCCAGTGAAGCTGATCCGAGCCAAGTCCCAGTACCTTCCCCCTGATGAGAAGACCAGCCTGGAGACCAGCTATAGCGCCACCTACAGGGGAGAGCAGGGCAAACAGCAGCCCAACGACAACAAGGCTGTGGACAGGAGGAGGATACGCAGCCTGTACAATGAGCCCTACAAAGGGCTACAAGAGACCAAGGTTGAGAGGTCTAACAGTGCTCCCCGATCCAAACCCAAAAAGGCGGGCGCCACGGTAGCTAGTCAGGGCGGCAAACCTGTCAAGAAGGCCAAAGAGCAGAAGCAGCCGGGCAGCACAGCACTGCGGGGCACCAAGAAAACGACCTCTGAGAACCAGCCCACTGAGTCCAGGCCTGCGGTGGGGGACAAGGAGAAAAAGAGCTTAATGACGAGGTTCTCCGACCCGGTGATCATCATTCCCAGGGTGCCGTTGGAGGAGAACCAGAACCACTGGAGGAAAGACCCGAACCACGGAGGAGCGGCGTAGTTGTGCACTTTGCCCCAGATGTAAAGTATGAGTAGATCCACTAGATCTGTACTGTAgggacatactgtactgtaggcctatggtATACAGGGAGGAACTGCtgtcctgttctgtactgtacatatatagtATTTTCAATTCAGTTCTATTGGGAAAAGAGAAATACCCCATTAACAAGTCCTCTGCGTGAGGAGGCTAACCAAAATAGGATGCACGTAGCGTGTTTGAAACAGCTTTAGGGCAGTGCGGTCATAGCTGTTTGAGCAAATGCAAATGCAAAAGGTGCTATAAGTTTAATTTCCGTTTCATGCTTTTGTTTTAAGAGAATGTTTTCATTTGGTAATGATGTTAGAAATGCCAAACCATAAAGTGCttattgaaagaaaaaaaagaactgTATATTGATCAATTCAAAGGCAAATAAATATAGATAACTTGCTGA

Function

NR:

description
PREDICTED: microtubule-associated protein 6 homolog isoform X3

GO: NA

KEGG:

id description
K10432 MAP6; microtubule-associated protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937404.1 False 2147 mRNA 0.50 5 32351752 32382873
XM_036937405.1 False 2036 mRNA 0.49 4 32351752 32382873
XM_036937406.1 True 1999 mRNA 0.50 4 32351752 32382873

Neighbor

gene id symbol gene type direction distance location
LOC110537457 wnt11 coding upstream 324008 32005154 ~ 32027744 (+)
LOC110537454 LOC106567941 coding upstream 356067 31971901 ~ 31995685 (+)
LOC110537456 LOC105010978 coding upstream 382810 31961376 ~ 31968942 (+)
LOC110537455 LOC106567942 coding upstream 390836 31955273 ~ 31960916 (+)
stt3a stt3a coding upstream 419114 31917035 ~ 31932638 (+)
LOC110537463 LOC106567953 coding downstream 21442 32404315 ~ 32410155 (+)
LOC110537465 LOC106567954 coding downstream 33584 32416457 ~ 32438081 (+)
prdm15 LOC106567952 coding downstream 55445 32438318 ~ 32454813 (+)
LOC110537467 LOC106567956 coding downstream 75598 32458471 ~ 32471371 (+)
LOC110537469 LOC106567749 coding downstream 121372 32504245 ~ 32534686 (+)
G1060718 NA non-coding upstream 30544 32304204 ~ 32321208 (+)
G1060602 NA non-coding upstream 271406 32061000 ~ 32080346 (+)
G1060555 NA non-coding upstream 372147 31979194 ~ 31979605 (+)
G1060536 NA non-coding upstream 447659 31903347 ~ 31904093 (+)
G1060911 NA non-coding downstream 230377 32613250 ~ 32614551 (+)
G1060932 LOC106567958 non-coding downstream 276819 32659692 ~ 32660196 (+)
G1060957 NA non-coding downstream 315123 32697996 ~ 32699061 (+)
G1060990 NA non-coding downstream 379691 32762564 ~ 32762805 (+)
G1060470 NA other upstream 540405 31811062 ~ 31811347 (+)
G1059685 LOC106567926 other upstream 1142395 31207629 ~ 31209357 (+)
G1059091 NA other upstream 1344686 31000227 ~ 31007066 (+)
LOC110537434 NA other upstream 1472641 30848508 ~ 30879117 (+)
G1058787 LOC106567901 other upstream 1834862 30516081 ~ 30516890 (+)
G1062404 NA other downstream 976861 33359734 ~ 33366249 (+)
G1062537 NA other downstream 1125446 33508319 ~ 33508863 (+)
G1062648 NA other downstream 1275405 33658278 ~ 33661949 (+)
ubb ubb other downstream 2384151 34766968 ~ 34770882 (+)
LOC110537506 LOC106567992 other downstream 2593419 34964222 ~ 34982028 (+)

Expression


Co-expression Network