LOC110537463 (LOC106567953)


Basic Information

Item Value
gene id LOC110537463
gene name LOC106567953
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 32404315 ~ 32410155 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623523.2
ACCTCATCCCTGGAGTGGGATGACGTCAAGTTCAAGATGGATGGAATCACGACTACCACACACTCAACAGAATTCTGATATAAATTCTTGTTCGTGTGCTCCGTGGGAACAGAACGAAGACATAGGGCCAGAATGGAGAGTCTGGTGCACTACAGTAATCCATCCCATGGCCTCTCTGTGCTGGGGGTGCTCAATGAGCAGCGCCTGAGGGGGCAGCTCTGTGACACAGTCTTGGTTGTGGGGGATCAGCGGTACCAGGCCCACAGGAGTGTGCTCGCCGCTAGCAGTGAGTATTTCCAATCACTGTTCACACGAAGGGAGTCTGAGCCCCACAAAGTGATACAGCTGGACTTCTGTGAGCCTGACGCCTTTGAGATAGTACTGAATTACATATACTCATCCTCCCTCTTCGTGGACAGAGGCAGCCTGGCAGCCATCCAGGAGCTGGGCTACAGTCTAGGAATCCCTTTTCTAACCAACATTATGTCAACAAGGCCGCATGTGTCCTACTGCGTCTCCAGAAAAAGGCTGTCCTTCTCAGAGGACGATAACGACATCCAGCTGAGGAGTGTCATTGTGCGCCAGAGCCGAAGGGGTGATGCTCCCGGGGCTGGATGCTATGGTTCAAATGATCAAGGAGAACAGACTCAAGCTTCAGGGCACAGGAAACCAAACGAATCAGCCAGGAACACTGCATCCAATCCCAGAAAATCAGCTGAAGCAACTGGTGAGGGTTCTGATAGCAAGCCCATCAGTTCATATGCCTCCATCTTAAAGGGGAAGACATCACACACAGGGTCATCAGTAAGGCCACAGCTCACCTCCTCAGTCTCCTTCAGTGAATCTCCAACAGTCATGTTACAGTCTGATCTAAGCActaaagaagaagaggaggagcagaggctCTACAGATCCAAACCACAATTTCAGGGCCAGGTAGGGGAGCCTAGTCAGACCATTGACAGGAGTGGCCCACTCATAAAAAGCCTGCTGCGCAGGTCCTTATCCATGGACAGTCCCATCCCAGTCTTCTCCCCCACACTGGAGCTCAATAAACTGCAAAGCCGAGAACAGTCTGTTGTTAAGATGGTGGCAAATACAGAGGAAGAGATTCAGACAGAGCACAAACAAAGTGTGAAAGTAGTTCCGTCGCTTCTTCTCAAGTCAAGGCACCACAGTAGGCATGATAAAGATGAAACTCCAGGAAAGGAGTTCCATGTGAAGACCGAGCCTAGCAGCCCACTGTCTGACCCCTCTGAGATCATTAGGATCACAGTTGGGGATTCTCTACCAGTTAACCTCAAAAACAATGAAATTAATTTTGACCAAGACCCTACTAAGCCATTCTCTAAACTCCCTGGAAAGAGAAGGGTGAGGAGAGACAATCGAAGGTACCCATTCAAAAAGTCTAAAGGGGTGAACGAACATGATTTCCCATGTGAAGATGACGATGACAATATGTCAGAATCTGTACCTCACAACTCCAACATGGATGACAATGATGATGACTGGACTGATGATCCCAGGAAGAGCAAGATGTTTAAATGCTGGATCTGTTTGAAAGTGTTCAGATCCAATGCTGGATTGCATCGTCATGTTAACATGTATCACAACCCAGATAAGCCATATGCTTGTGACATCTGCCACAAACGCTTCCACACCAACTTCAAAGTCTGGACCCACTGCCAAACCCAGCACGGAGTGATACAAAACCCTGCTTCATCCTCCAGCTCATTCGAGCTGGATGAGAAGTTTCAGAGGAAGCTGATTGATATTGTGcgggagagagaaataaagaaagccTTGCTCATGAAGCTGAGGAGAAATAAGCAGGGTTCGCAGTCTCAGGTATTTGCCAAAAAAGGTGGCCTGAGGTCCAAGTCAAATTTGATATGCCCTTACTGTGGgaaattgtttgtgtttctctaTCAATTCAAGCAGCATTTGAAGACACACCCTGCGGAGAGAGACAAccaagagactgagagagagagcagtctctACCAAAAAGACCAGGACCAGCCCGGTCAGAGAGAGAACACGGACACAGAGGTTTACTCCTGCAGGCTGTGCAATGAGAAGCTGTCCTCTCTCTTTGAGCAGGGAGACCACGAGAGGGGCTGTCGACACGCAACCGTGTGCCCGTACTGTGGCCTCCGATTCTCCAGCCCAGCGGTTAAAAAAGAGCATGAAGCACACTGCAAGTACAAGAAACTGACCTGCCTGGAGTGCATGAGGACCTTCAAGTCTTCCTTCAGCATATGGAGACACCAGGTGGAGGTTCACAACCACAACATTATGACTGTTAAGGAGCAGCTGAGCCATCAAGAGGAGAACAATGGAGAGGTATCTGACCACCTCGGAAGGCCTTTCCATACCCAGGAGACTGTGGGAGTGGGGAGCTCCAGAGAGGACATCATCGACAGTGACTCCTCAGGTCCGCCTATGTTGGACTCTGAGGATTCTTCATCATTCGTGCCCGAGGACCTGAATGCTAGCCAGTGTCACAACGAACATCACGGCGAGCTGACCGTGAAGGATGAGCCCATTGAGGAGGCCGTGAGCGAGAGGGAGGACATGACGTCTGGGGCCTCTGTCGAACCTGAGGAGCCAGGCGTGTGGCCATGCGAAAAATGTGGCAAGCTCTTTGGTGGCCACAAAGACCTGGAGCGTCACCAGGAGCTGCTGTGCCACATCAAACCCTTCATCTGTCACATCTGCAACAAGGCCTTCAGGACCAACTTCCGCCTTTGGAGCCACTTCCAGTCCCACATGTCAACCTCCGACGAACCTGGAACGAGAAAGGTTGATGCCAGGCGCCctttgtctccctccccctcaccacCACCAGCGGTCACACATGCAACTGGATGTCCTGCACCACAAGTTTTTCCACCTAAACCAATGGAGGCAGATTCAGTGGTAGCTAAAGCTGTGGTAGCAAAAGAGAAGGAGAAGCCTGGAAGCTCATCGTCAATGCCCAGGACCAAGAGGCCAGAGATGGACAGATCACACAGTAGCCCCCTACCCAAGATGGATAGTGTGGATAATTCCCTCACCCCTCAGGAATCAGAAACCCTTTTTTACCATGCCCCCACTCTCTCTGCCCTCACATTTAAGAGGCAGTACATGTGTAAGCTCTGCCACAGAACATTCAAGACTGCCTTTAGTCTTTGGAGCCACGAGAAGAGCCATAGTCACATTTAAATGTGTCTCACTCAGACACCTGTACTCTGTTTTGAGCCTCTGAGATGATACTTTATGCTCACAGCATCGTAAGAGATCAAATACAACTCAGCCGGCACAAGAAAGATGTTGAATGTATCTATTGCTGTTGGTAGTTGGCTTGCCTTCATGTTATCTTTTCCAGTGGCCATGTGTCATAGAGGTGAGAAAGTGAATGTCTGCAATGAACTGCTATTTGACTCATCAGCTCCTTACAATGGTTGCTTTGCCTTTGATATTGGATTTACACAGTACTGACCTATTTCAGATAACTCCCTTTCAGTTGGCTTTACCTATATAACTATTTTTGGGATTCAAGAAAGTGCTTTATTTAGGAATTGCTGTACTGTACAATTCAAGAACAGTTACGTGCTTTTGCACGTTGTGAATTTGTGTTGATTGATGTGTGAAGATGACATTATGAAGATGATATTAGTGGCCTCAGGCATCATGTTTATTGATATGCACTTTGCAATTCTGTTCAATATTTACATTACTTATAATGGTCAAATTACATTGGTTTTAATTTCAGTTATATGAATCTTTATTTTGGATCCTCTGCATTCCATTAACATTTCAGCTGTAATCTGTTTTGTACCATAAAAGTATGGTTTTCATATTGACTATTTGTGTTAATGCTGATTTTGTCATTGCCTCAATGATATTTCATGTAGATTATACAAGTTAACAAGACCAAAGACCAGTTAGATTAGCAGGGGGATAAGAACTGGAAACGCATGCAGTATTTCAACTGACACTTTTTTTAGTTATTGTAAATCCtgagtaaaataaataatttcttGTTTAATTTTAGCTATCACTCATTAAATTACAGATTATCATTAGTGGATTATTGTGTAAAGAATATGGAAAATATGTACTTTTGGGAAAGGAGTTTTGTTTACATTCTGCTCACTGGGTGTGGTGTATGGtagatttttgtttttaattattAATTTGTTACACAAATACAACAGCACACAAGCGACTTGTAGAGTGAATTTGAATGGATAAGAACATGGGTATTTTACTCTCTGTCGGCTCAATACTAGTATGATTAAGTGTGAAATAGTTTGAGGTTGATAAATACACAAGTAATCCTATGAATTGATTGCATGGCCTTAGCATATGCATCATGAGACAATTTTACAATAGATCTGTTAAAATGAAGCACAGTCAGTGTTTTTGCATATTAACTTTTTTTACATGGATATTTAGAATGGTTTTACAACCAAGAGCCAataaatgtgtgtatgtatgtatgtatgtatgtatgtgtgtatatatatatatatatatatatatatatatatatatatatatacagtaccagtcaaaagtttggacacctactcat

Function

NR:

description
zinc finger and BTB domain-containing protein 21

GO: NA

KEGG:

id description
K24805 ZBTB21; zinc finger and BTB domain-containing protein 21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623523.2 True 4582 mRNA 0.45 2 32404315 32410155

Neighbor

gene id symbol gene type direction distance location
LOC110537461 LOC106567950 coding upstream 21442 32351752 ~ 32382873 (+)
LOC110537457 wnt11 coding upstream 376571 32005154 ~ 32027744 (+)
LOC110537454 LOC106567941 coding upstream 408630 31971901 ~ 31995685 (+)
LOC110537456 LOC105010978 coding upstream 435373 31961376 ~ 31968942 (+)
LOC110537455 LOC106567942 coding upstream 443399 31955273 ~ 31960916 (+)
LOC110537465 LOC106567954 coding downstream 6302 32416457 ~ 32438081 (+)
prdm15 LOC106567952 coding downstream 28163 32438318 ~ 32454813 (+)
LOC110537467 LOC106567956 coding downstream 48316 32458471 ~ 32471371 (+)
LOC110537469 LOC106567749 coding downstream 94090 32504245 ~ 32534686 (+)
btg3 btg3 coding downstream 136763 32546918 ~ 32554656 (+)
G1060718 NA non-coding upstream 83107 32304204 ~ 32321208 (+)
G1060602 NA non-coding upstream 323969 32061000 ~ 32080346 (+)
G1060555 NA non-coding upstream 424710 31979194 ~ 31979605 (+)
G1060536 NA non-coding upstream 500222 31903347 ~ 31904093 (+)
G1060911 NA non-coding downstream 203095 32613250 ~ 32614551 (+)
G1060932 LOC106567958 non-coding downstream 249537 32659692 ~ 32660196 (+)
G1060957 NA non-coding downstream 287841 32697996 ~ 32699061 (+)
G1060990 NA non-coding downstream 352409 32762564 ~ 32762805 (+)
G1060470 NA other upstream 592968 31811062 ~ 31811347 (+)
G1059685 LOC106567926 other upstream 1194958 31207629 ~ 31209357 (+)
G1059091 NA other upstream 1397249 31000227 ~ 31007066 (+)
LOC110537434 NA other upstream 1525204 30848508 ~ 30879117 (+)
G1058787 LOC106567901 other upstream 1887425 30516081 ~ 30516890 (+)
G1062404 NA other downstream 949579 33359734 ~ 33366249 (+)
G1062537 NA other downstream 1098164 33508319 ~ 33508863 (+)
G1062648 NA other downstream 1248123 33658278 ~ 33661949 (+)
ubb ubb other downstream 2356869 34766968 ~ 34770882 (+)
LOC110537506 LOC106567992 other downstream 2566137 34964222 ~ 34982028 (+)

Expression


Co-expression Network