LOC118937881 (LOC106568064)


Basic Information

Item Value
gene id LOC118937881
gene name LOC106568064
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 32472658 ~ 32475120 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939653.1
AGATGCACATTCAATTGCACGATCACCAatataccacagaagaagaagactgaaggaggagagactactagaaactaactaggtttccccttttatctgttgattaattgtcagagtagagaacACATGATTTTGTGTGACTCAAAATGGGTTGATATTCTACAAATATCCAGGGATCTTGTACAGTTCAGTGTGTGACATAAGACAAATGAGCTCCTCAGCCATGCTGGACACCACTTCCACGCAGATGCAGGCTCCATACATGTGGCCTCAGCAGCCCAAGGGGTCATGGGTCCACAGTCATGCCCAGGTGTACTACCCACAgacatggacagggaggaccCAGGGCTACCTATCCCATTCTGCCACCCAGGCCCAACGGGTGTCTGCCCAGTACATGCACAGTGCGCTCTACTGGCTGCCTCAACACCAGCTACACCAAGACCAGCGTGCCACACAGTGGAGGCCTGAGTCAAACAGGATGGCCTACCAGGCTAGAGTCCCCTGGTCCTACAGGCAACACCTCACAGGAGGGCCCATGGATGCTAGGATGTACCCTATCTTCTCCACAGAGCCACAACAAGCCCCCACTGGCCTCCTCCCTCAGGCCGGAGACAGCAGCACTCACCTGGCCCCTCACCATCAGCTTGGAGGTCACTTCCAGGCAGGCTCCAACCACCCTCTGTTCGAGTTCCAGAGCTATAGCCTCAGGGCTGCAAGAGTCTCCCAGGCCTCTCTGACCCAGGTCACCGGCCCCAGCCTGTCCCTGCAGGGGTTAGGAGATAGTTCCCTGCCTGCAGTCACCTCTCTGGAGGAGGCTATGAAGATTTTCCACTGTGAGTCTGAGGAGGAACCCAGCCAGCAGGCTGAGGTTGGGCTGAGTGTTCTGGTGCCACAGGGAGTGTTGTCCAGCCCCGCCCAAGAGGATTCAGGCAGGGGTCAGTGTCCCTCCACCCTGGATCACTCCCTGGACCAGGAGGACCTAGAGGCCTGTATGCAGCGCCTGCTGAAGTCGCAGGGATCAGAGGGGTCTGTGGGCATAACCGCAGCAGGGGAGTCTGGCATGGAGTTCTTCTATGAGGTAGACAGCCTGGGCAGCCTGTGTGACCTCCAGTTGTTTGGACAGTGTGTGTCTAGCAGCAACACAGAGGAGGGCAGTGCCAACAACATGGATAACTGAAATAACCACATCTTTTAGCCTTATTTTCATGTTCATtcattattattgttttattaccAAAGCATTATCATTAAAAATGGATTGTTG

Function

NR:

description
uncharacterized protein LOC109892125

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939653.1 True 1267 mRNA 0.54 2 32472658 32475120

Neighbor

gene id symbol gene type direction distance location
LOC110537466 LOC106567955 coding downstream 56379 32414563 ~ 32416279 (-)
umodl1 LOC106568047 coding downstream 71393 32390534 ~ 32401265 (-)
LOC110537460 LOC106567949 coding downstream 128555 32333964 ~ 32344103 (-)
LOC110537459 LOC106567948 coding downstream 148985 32304197 ~ 32323673 (-)
LOC110537458 LOC106567946 coding downstream 172486 32137999 ~ 32300172 (-)
LOC110537471 LOC106567958 coding upstream 181617 32656737 ~ 33146644 (-)
LOC118937663 NA coding upstream 365266 32840386 ~ 32842865 (-)
LOC118937664 NA coding upstream 883327 33358447 ~ 33392252 (-)
LOC110537472 ints2 coding upstream 921454 33396574 ~ 33418705 (-)
med13a med13 coding upstream 943963 33419083 ~ 33532690 (-)
G1061574 LOC106567950 non-coding downstream 92551 32377214 ~ 32380107 (-)
G1061483 NA non-coding downstream 201478 32187869 ~ 32271180 (-)
G1061430 NA non-coding downstream 347508 32122866 ~ 32125150 (-)
G1061325 NA non-coding downstream 493509 31978924 ~ 31979149 (-)
G1061324 NA non-coding downstream 493955 31978329 ~ 31978703 (-)
G1061666 NA non-coding upstream 9598 32484718 ~ 32485654 (-)
G1061676 NA non-coding upstream 31815 32506935 ~ 32507183 (-)
G1061669 NA non-coding upstream 58049 32533169 ~ 32556542 (-)
G1061708 NA non-coding upstream 75421 32550541 ~ 32579617 (-)
G1061735 NA non-coding upstream 100710 32575830 ~ 32665872 (-)
G1061331 NA other downstream 480103 31991210 ~ 31992555 (-)
G1059610 NA other downstream 1401798 31067585 ~ 31070860 (-)
LOC110537432 NA other downstream 1698851 30738076 ~ 30773877 (-)
LOC110537425 LOC106567906 other downstream 1835936 30633836 ~ 30638038 (-)
LOC110537417 rnasek other downstream 2020445 30447386 ~ 30452456 (-)
G1062051 NA other upstream 564365 33039485 ~ 33086066 (-)
G1062603 NA other upstream 1037805 33512925 ~ 33513375 (-)
LOC110537478 NA other upstream 1231352 33667535 ~ 33707659 (-)
cenpv LOC107676655 other upstream 2282134 34755024 ~ 34759345 (-)

Expression


Co-expression Network