LOC110537478


Basic Information

Item Value
gene id LOC110537478
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 33667535 ~ 33707659 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034951.1
taacctctctcctcccctccatcaaCCCAAaacttccctccatcctcccctccttcaCCACCTCACCCCAAAACTTCCCTCCTCACCTCCCTCACCCCACCGCTTCTAACAGGTTTTTCTGTGCCTGGAAACATTACCATAATGAGCTATGAGCCATTCCAAAGCACTTAGCTTCTCTGAAGGTTTTTCATTGTATTAATTAAGTCTATTGCTCTGCGCTCGCTCCCTCATCCCCATGTTCCTGGAGGTATGAACCCACTGAACCTACCTGGGATGAGGATTTGTTTCACTCCAATCTCTTTAGTTTTTTCTTCATAATTCGGCTCCAGAAATCACAGAGTGATGCCAGCTTGCTTATAACTGAAAGCCTGTGAAAAACAGTGGAATTTTGTAAgagatttttttaaatcatgtGAGAATTACTGCCAGTGTTGTAGGTGTATGTGTTGTACATGGTGTAATGTTGCTGTTCCTTTCTCACGTATGGCCTtttctcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcatgagtgtgtgtgtgcgcactgcCATCAGAGAGCTGCTCCCTTACTTCATGGCGTAGACAGCGAGGCTGTCTGGAGCAGACCCTGGTGATAAAGACTACGACAAGTTTTAAGTTGCTGGAGCAGGCCGAGACTCCACAGGACTTGCAGTGCAAGTGCAGAAAATGGTTCAGAGGGTTGGATTCTTTGGAATTCTAGTCTGCGCCTCTATTACCAATCCAATGTTTGACCTGGCAGATATAACATGGTTCCCTTTTGGACCTTTTTTTGGAGCAACGCTAATTGGGAAATCCACAGCCAAAATGCACATTCAGAAACTGTTTGTGATCATAACCTTCAGCAGGCACATAGTGGAGCAGATGGTGTCTCTGATTGGGCTCCCTCCTTTTTGTGAACGTGTTTGAGTGTATgtctgtgagagtgtgagagagaattagtgtgtgt
>XR_002475632.2
taacctctctcctcccctccatcaaCCCAAaacttccctccatcctcccctccttcaCCACCTCACCCCAAAACTTCCCTCCTCACCTCCCTCACCCCACCGCTTCTAACAGGTTTTTCTGTGCCTGGAAACATTACCATAATGAGCTATGAGCCATTCCAAAGCACTTAGCTTCTCTGAAGGTTTTTCATTGTATTAATTAAGTCTATTGCTCTGCGCTCGCTCCCTCATCCCCATGTTCCTGGAGGTATGAACCCACTGAACCTACCTGGGATGAGGATTTGTTTCACTCCAATCTCTTTAGTTTTTTCTTCATAATTCGGCTCCAGAAATCACAGAGTGATGCCAGCTTGCTTATAACTGAAAGCCTGTGAAAAACAGTGGAATTTTGTAAgagatttttttaaatcatgtGAGAATTACTGCCAGTGTTGTAGGTGTATGTGTTGTACATGGTGTAATGTTGCTGTTCCTTTCTCACGTATGGCCTtttctcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcatgagtgtgtgtgtgcgcactgcCATCAGAGAGCTGCTCCCTTACTTCATGGCGTAGACAGCGAGGCTGTCTGGAGCAGACCCTGGTGATAAAGACTACGACAAGTTTTAAGTTGCTGGAGCAGGCCGAGACTCCACAGGACTTGCAGTGCAAGTGCAGAAAATGGTTCAGAGGGTTGGATTCTTTGGAATTCTAGTCTGCGCCTCTATTACCAATCCAATGTTTGACCTGGCAGATATAACATGGTTCCCTTTTGGACCTTTTTTTGGAGCAACGCTAATTGGGAAATCCACAGCCAAAATGCACATTCAGAAACTGTTTGTGATCATAACCTTCAGCAGGCACATAGTGGAGCAGATGGTGTCTCTGATTGGAGCTTGAAGACCAGTCATCAAAGAACAGTCCAGTCCAACTCTGATCCTCCTGAGTCCTGAGTCACAGGCCTGCTTTTACGGCTCTGCCTGTCCGTTTATAAGAACACGAAGCAAGGCAGGGCACAGCTCCAACTAAGGCCACTCATTCAACATTAACACAAACAAAGCAATTGTAAAAATGCCCATTCAGAACAATGGCAGCCAAGCTAATGAGTCAAAGGATGTGTTTTAGTAGGGGGTTGTGTGTAAATAGGGGTTATTTATAAAAACGTACCGTAAAACTGTTTTACATTTACTACCTGTTGTTTCCAACGGGTAATTTCCCCATACAAAGCGCCtagactaaataacaactattggCTCTCTTATACATATTTAACACCTTGAGGCAGACATCGGTGTTCAATTTGATTAGATTagatttttcttatttttttgacAAATGAATGGAAGAATCTGTTACTTGATTGTACTTGCATGTTATTTAGTAATTATTGATCATTCTTTGCATGTTTAGTCATTTTTCCCAATAGTCATCAActaatggttttaaatgttttatgttttgtttatttatattgAGAATCTAAATGTAGTCACTGTTTTTCAATGTTTTCTGGTTTTGTTTGATTGACCATAAATAAATTTTCGCCTGAGGTAATAACAGTGGTTGTAAAGCACTTGTACTAGCAATAAAAAAAATGCTATTTTGTAGTGAAAATAGCTAAAACGGTATTGTTGTGGCATTAGGAGGGGGAGGAAGTAGGTCTTGAAcagcactttcactggctgtctgtacgttagacagacacacatcctGCCCAACGTGTATGCACAACCTAGCCCTAGCCTCAAACCTGAAACTAACTATTACTGTGCACAAAATGTTGTCacttgttattgtgttatttttagTGATGTAATGTAAGCActacaggggagggagaggggggggcacACACCCcaatccacatcgatggggctgcagttgAAAAGGTTGGgtccctcaaa
>TU1210670
TGGGTAGCTGGATCAGGAAGTGTATGGAAGTGTGTGGGTGGGTACATCCACGGCGCCAGACCAGGCCTGCTGGAGAGACAGGCTGCAAGGCCCACCCCATCTCACCTCAACCGAAAACTACACCACCTGTAGCTTTGTACCAGAGGCTTATCATCATcacctgtagtgtgtgtgtttgtgtgtgtgtgaacttcaTAACACCTCATTAAGAGTTGAGTGCTCTCCAGTGCTGAGGGCTCAGTCAGGTGTATTCTACAACCATAGTTTTAGTTACGCCAGGATAAGTGTGATTTCCCCATTCATTCCTCTTCTATTTTACCAGGAAGACTCCGATTTCAGTACAGACGGCTCATGGCTTGTTTAGCTGGCAAGCCGTGCCCACACCAGAGAGTAATTATGCGGTAAGGGCACAGTGGTGTgtccacttaaaaaaaaaatacgcTGCAGGTGGCAGAAGGTTGgcacacataaaacacacacacagtagtacagTGAATGAAACAGCTGCCCTGGAGATTAGGGCATGTCTGAATTATGGGCAAACTGGCAGGTTTCATCAACGACTGCTGTGTTGACATGGAACAAGATGTCCAGATTAAGTACCCCCTCACCACTccttctccccatcctctctctccgaCACCCCAACCGTCCTTCCTCTCCcacaccctacccctccctctccccctcaccccaaaacgccccccctctcctccctcctctcctccttacccACCTCACTCCATAACTTCTTTCCTCCCCTCCATCAACCCAaaacttccctccctcctcccctccttcctcaccTCACCCCAaaacatccctcctctcctccctcctctcctcctcacccaataacctctctcctcccctccatcaaCCCAAaacttccctccatcctcccctccttcaCCACCTCACCCCAAAACTTCCCTCCTCACCTCCCTCACCCCACCGCTTCTAACAGGTTTTTCTGTGCCTGGAAACATTACCATAATGAGCTATGAGCCATTCCAAAGCACTTAGCTTCTCTGAAGGTTTTTCATTGTATTAATTAAGTCTATTGCTCTGCGCTCGCTCCCTCATCCCCATGTTCCTGGAGGTATGAACCCACTGAACCTACCTGGGATGAGGATTTGTTTCACTCCAATCTCTTTAGTTTTTTCTTCATAATTCGGCTCCAGAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034951.1 False 1090 mRNA 0.46 5 33667535 33706804
XR_002475632.2 False 2033 mRNA 0.42 5 33669706 33706804
TU1210670 True 1188 TUCP 0.51 1 33706472 33707659

Neighbor

gene id symbol gene type direction distance location
rps6kb1a LOC106567964 coding downstream 29989 33625763 ~ 33637546 (-)
med13a med13 coding downstream 134845 33419083 ~ 33532690 (-)
LOC110537472 ints2 coding downstream 248830 33396574 ~ 33418705 (-)
LOC118937664 NA coding downstream 275283 33358447 ~ 33392252 (-)
LOC110537471 LOC106567958 coding downstream 520891 32656737 ~ 33146644 (-)
LOC110537479 NA coding upstream 2524 33709328 ~ 33746715 (-)
cltca LOC106567969 coding upstream 83851 33790655 ~ 33855473 (-)
LOC110537486 LOC106567973 coding upstream 170585 33877389 ~ 34082067 (-)
akap10 LOC106567970 coding upstream 375654 34082458 ~ 34103082 (-)
c12h11orf54 cssa13h11orf54 coding upstream 410238 34117042 ~ 34125929 (-)
G1062639 NA non-coding downstream 98370 33568861 ~ 33569165 (-)
G1062638 NA non-coding downstream 99003 33568259 ~ 33568532 (-)
G1062637 NA non-coding downstream 99285 33568051 ~ 33568250 (-)
G1062625 NA non-coding downstream 118380 33548900 ~ 33549155 (-)
G1062619 NA non-coding downstream 130725 33536594 ~ 33536810 (-)
G1062882 NA non-coding upstream 5700 33712504 ~ 33712801 (-)
G1062884 NA non-coding upstream 9174 33715978 ~ 33716225 (-)
G1062885 NA non-coding upstream 12902 33719706 ~ 33720149 (-)
G1062892 NA non-coding upstream 43169 33749973 ~ 33752584 (-)
G1062603 NA other downstream 154160 33512925 ~ 33513375 (-)
G1062051 NA other downstream 581469 33039485 ~ 33086066 (-)
G1061331 NA other downstream 1674980 31991210 ~ 31992555 (-)
G1059610 NA other downstream 2596675 31067585 ~ 31070860 (-)
cenpv LOC107676655 other upstream 1050450 34755024 ~ 34759345 (-)
LOC110537499 emc6 other upstream 1098955 34805721 ~ 34807675 (-)
LOC110537509 galnt10 other upstream 1512731 35122172 ~ 35260534 (-)
G1064912 mrpl22 other upstream 1770033 35476837 ~ 35484504 (-)
G1065969 NA other upstream 2085551 35792355 ~ 35810394 (-)
G1062876 NA non-coding downstream 12320 33693952 ~ 33694152 (-)

Expression


Co-expression Network