LOC110537479


Basic Information

Item Value
gene id LOC110537479
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 33709328 ~ 33746715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937419.1
ctctgcccctctccctccctcactctctctctctcaccctctctccactgctccccctctctttctgtggCGCACTTTCACTTTCTGCCTTGTTTACCTTCTCTCACTCTTggccctccctcctttctctagAACAGAGTAGGGTGCACACAGTGCACACGCTCAacctcctactgtctctcctacttcgtttttctctcactctgcctGAGTCTCCCAtggctgactgtctctctgtcttcagtGAAGCTggcgctgtctctctgtctgtgtgtctgtcccctGTGTGCAGCACATGTTGAAGAGCTTCATGTGGTGTGCCTACTGGGCAGGCTTGGGTAACCTGTCCTCTGTGGGACTGGGGACTGGCATGCACACCTTCCTCCTGTACCTGgGTCCACACATAGCTTCAGTGATCCTTGCAGCATATGAATTTAGTTCAGTGGACTTCCCGGAGCCCCCCCACCCAGAGAACATCATCTGCCCCCAGGAGGAATTCCTGTTGGGGGAGACTGAGGCCGGGGGCcgggggcagcagcagcagctgtacaGTGAGGCATCTCCCTCTAGACCATCGTCGTCAAGGTCCGCCTGGAAGCCTGCATGTGGATGAGTCTACTGTAACTGTACTTGTAGCCTACACACTGTTAACACACAGTCTACTGAACAGTCCatggcacagagacacacagtctACTGGACTATCAGTATTGGTAGGGGTTGAGAAATGTCAAACATTTAATTGACCATTTTTAGCAATAATAACTAACCTCTGATTGATTGGAAAACCCCAGCCTTTCACGGTGAATTCCCCTAAAAACTTCATGTGGTTTAACCTAGCCATGTGCTTAGGTACTGGGGACCTGAGACTGACAGTTGACAATCCTTcatcactgtcacacacacacacaccaaacgcacacaccactgtcacacacacgccactgtcacacatacagtaacactgtAACAAGAGCCAGCTCCTGGCACAGGTAGAGGGTTATACCCAGTTATTCTGGATGCATTCTGACTCTGAAGGCCTTGTGGCTGTGTTGACCACTACAATGACTCAGACATATCTCTAATTGTATCAGCCACAAAACTACAAtgagattatatttctatggtatcAGTTTCCCACTGATGATCAGCAGTACTGTTCCTGAATTCTCAGCTCTCACAGCTCTTTTACCGGCAGTCAAGCAGCGTCAGGCCCTTTTTCAGCGCTTTCCTCTCAGAGTATAACTGTATCTACTGAGAAACACTGCTGGTTAACAGACAGAGAGCTCTGAGAGTAGAGAACTCATCTCTATGACCTGTGGtc
>XR_002475633.2
ctctgcccctctccctccctcactctctctctctcaccctctctccactgctccccctctctttctgtggCGCACTTTCACTTTCTGCCTTGTTTACCTTCTCTCACTCTTggccctccctcctttctctagAACAGAGTAGGGTGCACACAGTGCACACGCTCAacctcctactgtctctcctacttcgtttttctctcactctgcctGAGTCTCCCAtggctgactgtctctctgtcttcagtGAAGCTggcgctgtctctctgtctgtgtgtctgtcccctGTGTGCAGCACATGTTGAAGAGCTTCATGTGGTGTGCCTACTGGGCAGGCTTGGGTAACCTGTCCTCTGTGGGACTGGGGACTGGCATGCACACCTTCCTCCTGTACCTGCAGTGCGGAGCGGAAAAATGGGGGCTGGCTGGCTCAAGATCTGGGCTCCCAAACATCTGGTAGTCTTTACATTTGTTCTGAGAGCATTATTAACACTTAGCCACCCATCTGTCATTTGGGAGCAGCGCAGTCACAGTCCCATTGCATCGCCCAGTGGAGCTGAACTGGAAACTGTCCTCCATTCTGTGTCATGGAGAGCACACTCAAATGTCATTTGAGACATTTTTTATATTCAAATTTTTGTTGGGTGACCTGACTTACTTTCCAAGACGCCTGTCTGTTTCAAAGGAGGACGTCGCCATCTTATGGCCTTATTGATGGATCAGTAGATTTTCAGTGCTGTTTGAGGAATCCGTTCAAGTTTCCTGCTTTTGAATGTGGAGCTGATTGAGACAGCTGGATTGATGGGGGCTGTTGCAGGGGCTGAATTGAGTCATTGTGAGTTTGTGCTCCCCTACCCACAGAGGCCTCAGTAGAACCATAGATGTATGGTTAGAACACTGCTCCTTCTCTAATCTATCTTGTCCATGTTCACTTCTACAGGAAATGCTCACTACTACAGGAAACCATATGAATGTTTGtaatgatttttgcaatgtttgaTGGTTGCAGCGACttgtttatagaaatgtttgtgGTCATACGCACATCCTTAAAAATGTAGGTGCTGGGCTAATAAAGAATACTTGTAAAGAACCGGAAAGCTCGCACACTGTTTATGCTTCCCCAATTCACCGCTTTCTTGTCAACGTGACTTGTTTCCTCTTTCTAGATACGGTCCTTCTTCTTCACAATGGTTGATGCAGCTTTCCTGCTTGGGTTGAGGGGGTTCACTGTGAACCCATGCCCCTTACCTTCTGTGAGCAGTAGATGGCGACATTTGTCAGTGAATGTGAGTCAGACGCTGCATGCAATGTATGTAGCTGTACTGGCCATGTTCGAGAGGATCAAAACTGTaatgtatcatgggtaaattgtgactgattgatctacaaataataatgagtaggtatttatgatgcaaggtacATTGCAGATCACTCAGTCGACAGTCGCCTGCACTGTTGGCTGCGATGTTAAACAAGCtcacccagcaaaccaaaattggttaGGTCATGCAAATGTACTCATAACACATAAACTGTCCCGTTGATGATAATTCTagaatgtttgtataaaacatttgcctAATGTTGCAAGAATGTTCCTCAAACAAATGTCATCTGTTCTtcaaaggttcccagaatgtttcattagggtgtgggaacagtctggtgagaATATTGTGGGCACATCACAAAAGATATGTTTCcgaaacacaaaaactgtccagttgtgcagaTGATTCTACAATATTTATTTAGGGTGCAAAAAACACCTGATGTCACACGGATGTTCCCAGAATAACATTTAGTCTGTTCTTTAGAGGTGCCAATAATGTTTCATTAGGCTGTGGGAACATTGTGTGTGTATGATGAGAgaggttcccaaaacacaaaatatgCTCAGTTGTGATGACATTCCTATAATGTAAGAATGTTGTCAGAACACCTGGTCTAACTTCTTTAAAGGTTCCAGGAATATTATATTAATTCATGGGAGTTGTCTGGGATGTTGCACGAATATTCCCACAGAACATTCCCACAATGTTCCACAATTTACAGATAAGTCATGACGTTCATAGCCTATTTATTTTAGGTTTGACATATTCAATATACATTTTATCTTGTCTTGGAGGTCCTCAGAAACATGTCAAGACCATTTAGAAAATTATAGATTTAATTTTTACCTTATATTACCACAACATTCTCAGCATGCAAATGTGTAGCTCCTTAAAGCAGATTGGAATACATCCTCATTATATTTCTCTCCACGTTTAATGGACGTCCAGggggtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctggttttctgttcagcactttgagatatcagctgatgtacgaagggctatataaataaatttgatttgatttttgattcaCATTTGAAGGTGATATAGAGACACATGGCATTTTAATTCATAGGACATTTGAACAGCATTTAATCATACAAACACAACTATATTTTTTTACACTTCAAAAGTTGACAATCTGCTTGGTTTGGTTCACATGCCAGGTTTTTTTTATCCTCTGCACCACCAGGAATGCTCTTGTTTTTTTCACTATATAGCCATGGCAGTATGAAATCAGGAATTCCATGCATCCTTTTTTGTCTTCTTAGACATATCTGACCCGGGGAAATAATGGTAACTGGGTTATTCACCCATCCTCTTTATATGCTGCGTACATCTGGGCTCATATTTACAAGGTATCCAAGACTACGAGTGCTGATCTTGGATCACTTTTGCTTTTCAGATCATGAAaaatgatttaacctttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggcctacaccggccaaacgcggacgacgctaggccaattgggcgccttatgggactccctatcacggccagttgtgatacagcctggaatcgaaccagggtgtctgtagtgatgcctcaagcactgaggcgtcactacagaccactgtgccactcgggagcagcGGTCCGGAGTGAAAAATAAGACGGGACAATATTAAGCTTTTCAAAGTAGGACTTCCATTGGGTGTGTTTTTTATGGTTGAACAGTTTTATTTAAATTCTGCATTTCTGACTGGATTTATAAATCTGGACGAAATAAAGACATTCTTTATTTTTGGTTGATTATGTCTGAGCCTCATT
>TU1210668
gtctctctgtcttcagtGAAGCTggcgctgtctctctgtctgtgtgtctgtcccctGTGTGCAGCACATGTTGAAGAGCTTCATGTGGTGTGCCTACTGGGCAGGCTTGGGTAACCTGTCCTCTGTGGGACTGGGGACTGGCATGCACACCTTCCTCCTGTACCTGCAGTGCGGAGCGGAAAAATGGGGGCTGGCTGGCTCAAGATCTGGGCTCCCAAACATCTGGTAGTCTTTACATTTGTTCTGAGAGCATTATTAACACTTAGCCACCCATCTGTCATTTGGGAGCAGCGCAGTCACAGTCCCATTGCATCGCCCAGTGGAGCTGAACTGGAAACTGTCCTCCATTCTGTGTCATGGAGAGCACACTCAAATGTCATTTGAGACATTTTTTATATTCAAATTTTTGTTGGGTGACCTGACTTACTTTCCAAGACGCCTGTCTGTTTCAAAGGAGGACGTCGCCATCTTATGGCCTTATTGATGGATCAGTAGATTTTCAGTGCTGTTTGAGGAATCCGTTCAAGTTTCCTGCTTTTGAATGTGGAGCTGATTGAGACAGCTGGATTGATGGGGGCTGTTGCAGGGGCTGAATTGAGTCATTGTGAGTTTGTGCTCCCCTACCCACAGAGGCCTCAGTAGAACCATAGATGTATGGTTAGAACACTGCTCCTTCTCTAATCTATCTTGTCCATGTTCACTTCTACAGGAAATGCTCACTACTACAGGAAACCATATGAATGTTTGtaatgatttttgcaatgtttgaTGGTTGCAGCGACttgtttatagaaatgtttgtgGTCATACGCACATCCTTAAAAATGTAGGTGCTGGGCTAATAAAGAATACTTGTAAAG

Function

NR:

description
vacuole membrane protein 1-like isoform X2

GO:

id name namespace
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005774 vacuolar membrane cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937419.1 False 1324 mRNA 0.50 2 33709328 33746715
XR_002475633.2 False 3211 mRNA 0.42 2 33742733 33746715
TU1210668 True 860 lncRNA 0.46 2 33744856 33746487

Neighbor

gene id symbol gene type direction distance location
LOC110537478 NA coding downstream 2524 33667535 ~ 33707659 (-)
rps6kb1a LOC106567964 coding downstream 71782 33625763 ~ 33637546 (-)
med13a med13 coding downstream 176638 33419083 ~ 33532690 (-)
LOC110537472 ints2 coding downstream 290623 33396574 ~ 33418705 (-)
LOC118937664 NA coding downstream 317076 33358447 ~ 33392252 (-)
cltca LOC106567969 coding upstream 43940 33790655 ~ 33855473 (-)
LOC110537486 LOC106567973 coding upstream 130674 33877389 ~ 34082067 (-)
akap10 LOC106567970 coding upstream 335743 34082458 ~ 34103082 (-)
c12h11orf54 cssa13h11orf54 coding upstream 370327 34117042 ~ 34125929 (-)
timm22 LOC106567977 coding upstream 614556 34361271 ~ 34365249 (-)
G1062876 NA non-coding downstream 15176 33693952 ~ 33694152 (-)
G1062639 NA non-coding downstream 140163 33568861 ~ 33569165 (-)
G1062638 NA non-coding downstream 140796 33568259 ~ 33568532 (-)
G1062637 NA non-coding downstream 141078 33568051 ~ 33568250 (-)
G1062625 NA non-coding downstream 160173 33548900 ~ 33549155 (-)
G1062892 NA non-coding upstream 3258 33749973 ~ 33752584 (-)
G1063648 NA non-coding upstream 127653 33874368 ~ 33874665 (-)
G1063649 LOC106567971 non-coding upstream 128380 33875095 ~ 33875599 (-)
G1063650 NA non-coding upstream 129156 33875871 ~ 33876076 (-)
G1063803 NA non-coding upstream 368823 34115538 ~ 34150816 (-)
G1062603 NA other downstream 195953 33512925 ~ 33513375 (-)
G1062051 NA other downstream 623262 33039485 ~ 33086066 (-)
G1061331 NA other downstream 1716773 31991210 ~ 31992555 (-)
cenpv LOC107676655 other upstream 1010539 34755024 ~ 34759345 (-)
LOC110537499 emc6 other upstream 1059044 34805721 ~ 34807675 (-)
LOC110537509 galnt10 other upstream 1472820 35122172 ~ 35260534 (-)
G1064912 mrpl22 other upstream 1730122 35476837 ~ 35484504 (-)
G1065969 NA other upstream 2045640 35792355 ~ 35810394 (-)
G1062885 NA non-coding downstream 24707 33719706 ~ 33720149 (-)
G1062884 NA non-coding downstream 28631 33715978 ~ 33716225 (-)
G1062882 NA non-coding downstream 32055 33712504 ~ 33712801 (-)

Expression


Co-expression Network