LOC110537486 (LOC106567973)


Basic Information

Item Value
gene id LOC110537486
gene name LOC106567973
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 33877389 ~ 34082067 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937429.1
GTATTCACAGCGCGCAGTGACGCGCGCGTCAATGTGGAGACTTTTGTTGTGAAGCCCACTGGTTACCACGCTTAACCAAAACCACGGCTTCTGCTGAGCAAAAAGCGCGGCGACTCAAATACCGGACCGATAAAGAGAACTGCAGCACTAACCAtatgtttaattttttttatctcTTGCGTAAAATTCGGTAAAGAGTATTTGATAGTTCCAGGTGGTGACCATCCTACGGACTGACAGTTACGTATCTGTGTCTCGGGAGGCTGTTGATGTAATATTTGTTGGGGGAGAGCTTCAGCTGATCTTTTCTGGGTGTGTGCTCCAAATGCATTCGTTGCTGGATCGGAAGAAAAAAGAAGCCGGGGTTGGGATCGAGCTGTCTCCGAGCTACTCGTTGCCCCAAGCTGCGAGGATGTTCAGTTGTGTGGGCTGCTTTTGGGTCCTTCTGTCCTCTGCTCTGGTCGCTATCTGTAGTTTCAGTTTTATATCCCCTGCGTGGATTGTCAAGGACCATCTGAAAAACAAGGACTCGGTGAGCTTCGGCTTACTTTGGCACTGCTCAGAGTCCCTGGACCATATGTACAGATGCTACACCTTCGGAGGACTCGGAAAATTTGCCGAGATCCCGTCCAGCTCGTGGCAGacgaGTGCAGTGCTGTGTTCTGGAGGATGTTCTCTCCTGGCAGTCAGCTCTCTGTTGGCCATCATCACCATCTTCCTGCCCAGCGGAGGCTGTGAGAGGAGGATCTGTACACTGGCTGGATACATGCAGATGGCTGCGGtGTTTATCATGGGATCTGGGCTGCTGGTCTATCCCTTTGGGCTCAACTCCACCTTGGTGAGATCCTTCTGCGGGGACTCAGACATCTATTATGCCGGGGACTGCCAGATTGGCTGGGGATACATGCTGGCCATCGTCAGCGTCATGCTCACACTCTTCCTGCCTTTCTTCGCCAAATACGCCCCAAAGGAGCACCTGTCCCCGACACCCTTGCCCACTCTCTTATAGGGCAACAACTGACCCCACCCTCATCCAGTCAGTCTACTACAATACTCCCTACGTCCGTGTATGATGTCATGGAGATGGAGAAACCCCTGCGTCCACTTCTTCTGTAGGATGCCATTTTAAAAAGCCCTGCCCACTGATATACAACTAGGCTATACACAACTGTGAATAACATTTATGTACCGTCTTCCTTCaagcaaaatatatttatttgatcTAATAATTTACCTTATTGttatgttctttattttactgtcAATTTGTGACTTtgcattttctgttttttttctggaaaaaatacatgtttgaAAGAAACACAAGGATTGATAACAACAACCTCTGTTCAGATGGACAGAAGTATACATCTGTTATACATAGAAAGTTGGTTAAACATTGCAGTAACCAGACAGAGGGTGATGGTCAGGTCTATAACCATAATGACTCCAGGGTGACATTAATAGTGGGCAATACTGAATAAGTGTAACATTCCAGAATCATCAGAGCTGTTTGCAAGAGAAAAGGTGGGACAATAAGGAGAATCTTCAATCGTCAAGGGTGGCATGAGATTAACAGACAATATGAAACATTTCTACAGTTATCAAAGGACATGGACACGCTTCAATCTTCAATGGGTTCATGTGCATATGGCGAACAGTCAAGACAATAGGAGACCCATTTAACATCAAGACAAAGCAAGGATCAGAAAGTTATGACATTGACTCAGACCCATAGATCTCAACACAGTGAGCGCATTCAAAGACTCCGTCCAGAGGAGTTTGAGGAAAGGGGATTGTATATAGGTTTGGATCTAGATGCAGTTTGGATCCAGTATTGAACAACACTCTGGCTGTAAGGATGTCATCAGATGGACGTGTAGCACAGTGAAACATTAGCCTGGGGACTCGCCATCTGACTTAGCCTACACCTTCAACATGGTTCTAAAAGGTCAGAGACCATTCACATTTTCAACAAGTCTCAAGCAGTGACCCATTGGACAGTAACAATTCTAGAGAAATTGTTGGACACGTTTTTCAATGGAGGAGATGTACCAAACAATACAGAAGTGTCTGACCTGCCTTCAAGACAAATTAATATAGATAAAGAGGTGTGCATAATAACACAATAATTGTCTGATAGTCAACTTTTAAGGCATGTGAAGAGCATTTGTTACAAATTTGATGTTGGGATGACATGGCATCCTTCTACCAACCTTTCCAGAGTTCCTAGTGTTAATATGGTTGTCTTGTTAGCCCAAGTCATTATTATTTCAGTTTTTACACAACACAATACTAGCGATACACTATAATTCAGGACTACATTAAATCAGGCGAAAGGCAAGAAGATAAGATAGCATTGTCTTGAAATTCTAGACTAGAGTGCAGATAAAGTTGGGGTTAGTTAATAAATAGTAAAACAGCTGATCTAGATTAAAATATATCTGCTCTGACCATACCAACGTGTGCCTTTATAACAAAACCAAGACAAGTTACTTCaatactacactcttagaaaaatggGTTCCAAAACAGTTATTTGTCtgtcctttttggttccaggtagaacgctTTTGGGTTCTACATTGCATtgaacccaaaagtgttctacctggaaccaaaaagggttctcctatggggacagccgaagaacccttttaggttctagatatcatatttttttctaagagtttatTAATATCAGGTTACTATCTACTTCAACTGTGGATATTGTAGTATAGAAATGTTCACGTTATTATTTTCCCTGTGTGCTGTACTTTTCCTGTATATGTTTCAAGATGTGCTTCTTCTGTACATTATAATCTTCTTGAatttggaagaatgttctatagAAGAAAAAAACTGATCTCTTCTTAAAGCTTGAaggcaatgagagagagagctgtactTGTGTTGAATTATGCCCCTGACAATTTATTCACAAGAGGAAAATCACTTTAATCACTAAATTAAAAGGTTGTGACATGCAGCTAATGCATTAATTCCTGGCATGCCCATACACCAAGTAGAGTGGCACAACTTGAGAGCAGTACAAATTGAACTTAGCCCGCAGTTATCAGTGTTAAGTTGACACATTATCCAGGTAATATGTAAAGTGTGGCTAAAAATAATTAACTTCTGAGATAAGCCAATGGATTAGTGTGTTTTTGCCATCACATTTCTCCTAATTGAATCGTTTTATTCTTATCATGTTTCATGGACAAATTGTATAATTTCCCTGACTACGCAGCCAATTCCACAAATCGGTGTGCTTTTACATACATACTGcattccaatgtgtgtgtgtgcatgcgagcTTAATACTGAGATGAATGTCATTGAAAATTGCCAAAATTACTTAAAAAGAGGAAAAGTCATGATAAAAAAACGTATGTAATTGTGTTGCCATGTTTTGAAAAGAAGACCAAGAAAGAAATGCTGGTATTTGTATTGGACCTCATACTGTGCTTGATACTGGGAATGACTGGGGTTCACTTACTGCACAGGATTTGTACCCCGATATAATGTTGAAACATTGTGTGTCAAGTCTCAGCACTGGTGAAACTGTTTTTGTAGAGTAGTAGAACTAGTTTTTCCATTGTAATATGTTGGTTGTAAATAAACTAATAACTGTATGTTATTGTAGCTCACTTTTCATTcttaactgcccccccccc

Function

NR:

description
PREDICTED: transmembrane protein 211-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937429.1 True 3677 mRNA 0.41 4 33877389 34082067

Neighbor

gene id symbol gene type direction distance location
cltca LOC106567969 coding downstream 21916 33790655 ~ 33855473 (-)
LOC110537479 NA coding downstream 130674 33709328 ~ 33746715 (-)
LOC110537478 NA coding downstream 170585 33667535 ~ 33707659 (-)
rps6kb1a LOC106567964 coding downstream 239843 33625763 ~ 33637546 (-)
med13a med13 coding downstream 344699 33419083 ~ 33532690 (-)
akap10 LOC106567970 coding upstream 391 34082458 ~ 34103082 (-)
c12h11orf54 cssa13h11orf54 coding upstream 34975 34117042 ~ 34125929 (-)
timm22 LOC106567977 coding upstream 279204 34361271 ~ 34365249 (-)
zswim7 zswim7 coding upstream 490097 34572164 ~ 34590518 (-)
ncor1 ncor1 coding upstream 520211 34602278 ~ 34725530 (-)
G1063650 NA non-coding downstream 1313 33875871 ~ 33876076 (-)
G1063649 LOC106567971 non-coding downstream 1790 33875095 ~ 33875599 (-)
G1063648 NA non-coding downstream 2724 33874368 ~ 33874665 (-)
G1062892 NA non-coding downstream 124805 33749973 ~ 33752584 (-)
G1063803 NA non-coding upstream 33471 34115538 ~ 34150816 (-)
G1063927 NA non-coding upstream 151504 34233571 ~ 34235794 (-)
G1064029 NA non-coding upstream 305926 34387993 ~ 34397918 (-)
G1064132 adora2b non-coding upstream 471845 34553912 ~ 34554918 (-)
G1064126 NA non-coding upstream 487913 34569980 ~ 34570395 (-)
G1062603 NA other downstream 364014 33512925 ~ 33513375 (-)
G1062051 NA other downstream 791323 33039485 ~ 33086066 (-)
G1061331 NA other downstream 1884834 31991210 ~ 31992555 (-)
cenpv LOC107676655 other upstream 675187 34755024 ~ 34759345 (-)
LOC110537499 emc6 other upstream 723692 34805721 ~ 34807675 (-)
LOC110537509 galnt10 other upstream 1137468 35122172 ~ 35260534 (-)
G1064912 mrpl22 other upstream 1394770 35476837 ~ 35484504 (-)
G1065969 NA other upstream 1710288 35792355 ~ 35810394 (-)

Expression


Co-expression Network