c12h11orf54 (cssa13h11orf54)


Basic Information

Item Value
gene id c12h11orf54
gene name cssa13h11orf54
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 34117042 ~ 34125929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623556.2
ACGTCACGTCAGAGAATATTAGTTGGCCAACCAAGGTTTTTCTAGAAGTTCTTCATCGCGTTTCACAATCAGGTGCTCTTCAGTCGCTTGAAGCTTGTGATTCCTACAGGATACAGAATGTCAGACGTCAGCAAGACTGAAAAGTTCCAGTTATATGTCCCGATTTTGGAGGAATTATGTGACGTGTTGCAGAGAGGGCTGAAAAACAATTTTGCTGACGCGCAAGTTTGTGTTGTCGACTGTCCAGACCTCACTCAAGATCCGTTTAAGTTTCCCGTCAAGGGGTTGTGTGGAAAACCTCGCATTACAGATGTGGGGGGAGTGCCCTATTTGGTCCCCCTGGTCAAAGTGGACAAGGAGTACAACATGAACACTGTGTCAAAGGAATTGGAGCTACCTGGAGCATTCATTCTTGGTGCAGGAGCTGTATCCTCCAAAAATGTTGGAATGAATGCAGAGATGATGCCTCTGGTGCTCACTGAAGCTGAGGGAAGGCCTGCAGTGAATAGCAGCTGGTTTTCCTCCATAAATCCAGATAATAACCAGTGTCTTTTGGAGAAATACAGCGATAAGTTCTCAGACTGTGACTTTGGACTGCTGGCAAACTTGTATGCATGTGAGGGAAAGCCTGGAAAGGTCATAGAGGTGAGAGCCAAAAGGAGAATAGGAGAAGAGAGCCTTGTGGGTGCTCTGAGGAAGACCATGGAGGAGCACTACCCTGATAAAAGCCTGGCTCTGGGGGGCACCTTCCTCATCCAGAAAGGGAAGGCCAAGATCCATATCATGCCAAGGGAGTTCTCAGCCTGCCCACTCAACTCCAACGATGATGTTAACAAATGGCTGAAACATTTTGAGGTCAGCGCACCATTGATATGCCAGTCTGTGATGGTCTCCAGAGACCCCGGTTTGGACCTACGTGTGGAGCACACTCACTGCTTCAGCCACCATGGAGAGGGTGGTCACTACTACATAGACACCACTCCTGACACTGTGGAATACCTGGGTTACTTCATGCCTGCCGAGTTCGTCTACCGCATCGACCGACCCAGTGAGACCCACGAAGTTGGGCGAGACTGAAACATGACACAACTTAAGTCAAATTAATGTTAGAAAATCTTACCTTTTGATGTTGATTTATTTAACTGAATCAATGATTGATCATCAATCTATTTTACTTTATGCATTTTTCAAAAGgcctttgatttgatgattttacAACAAAGACCACATTTGTTTTAGTCAGCACGATATTGTGCGATTTAAAGCTAAACGTTTTCAACAATAACTTAAACATTTCATGAATCGTTTGATAAAAATGCATTTGATTCAAATAATTGTAACATTTCATTATGTTGTACTTTAGCGAATAAACTACCTGTCAGTGAtgtgtaaaataaatataaatttcATTATTATTT

Function

NR:

description
ester hydrolase C11orf54 homolog

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623556.2 True 1418 mRNA 0.43 8 34117042 34125929

Neighbor

gene id symbol gene type direction distance location
akap10 LOC106567970 coding downstream 13960 34082458 ~ 34103082 (-)
LOC110537486 LOC106567973 coding downstream 34975 33877389 ~ 34082067 (-)
cltca LOC106567969 coding downstream 261569 33790655 ~ 33855473 (-)
LOC110537479 NA coding downstream 370327 33709328 ~ 33746715 (-)
LOC110537478 NA coding downstream 410238 33667535 ~ 33707659 (-)
timm22 LOC106567977 coding upstream 235342 34361271 ~ 34365249 (-)
zswim7 zswim7 coding upstream 446235 34572164 ~ 34590518 (-)
ncor1 ncor1 coding upstream 476349 34602278 ~ 34725530 (-)
cenpv LOC107676655 coding upstream 629095 34755024 ~ 34759345 (-)
LOC110537499 emc6 coding upstream 679792 34805721 ~ 34807675 (-)
G1063650 NA non-coding downstream 240966 33875871 ~ 33876076 (-)
G1063649 LOC106567971 non-coding downstream 241443 33875095 ~ 33875599 (-)
G1063648 NA non-coding downstream 242377 33874368 ~ 33874665 (-)
G1062892 NA non-coding downstream 364458 33749973 ~ 33752584 (-)
G1063927 NA non-coding upstream 107642 34233571 ~ 34235794 (-)
G1064029 NA non-coding upstream 262064 34387993 ~ 34397918 (-)
G1064132 adora2b non-coding upstream 427983 34553912 ~ 34554918 (-)
G1064126 NA non-coding upstream 444051 34569980 ~ 34570395 (-)
med13a med13 other downstream 584401 33419083 ~ 33532690 (-)
G1062603 NA other downstream 603667 33512925 ~ 33513375 (-)
G1062051 NA other downstream 1030976 33039485 ~ 33086066 (-)
G1061331 NA other downstream 2124487 31991210 ~ 31992555 (-)
LOC110537509 galnt10 other upstream 1093606 35122172 ~ 35260534 (-)
G1064912 mrpl22 other upstream 1350908 35476837 ~ 35484504 (-)
G1065969 NA other upstream 1666426 35792355 ~ 35810394 (-)

Expression


Co-expression Network