zswim7 (zswim7)


Basic Information

Item Value
gene id zswim7
gene name zswim7
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 34572164 ~ 34590518 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937458.1
agctacagctagctagcactgtggTGCATAACAGGTGGTGAGTAGTttactcaaagagagagaaagacaatagttgaacagtttttaacaaattcatttcttcaaaaatgaaagaGATGCAAGAGCTATATATCATTGTATTTAAAACAAAAAcgttcacttacttagctagtgaCTGCACCTagttagtttagcctactgaaacaccaagctcaaacagagagggatgctatgttagctagctggctatggctatccaacccTGGAACACATTCAAGTCAAGTTCCTGATGACCTGCTTATTGCgcTGAGGTTTGTGTTTGGCTCCTGTGCCCTCCAGGCCTTGGACCTGGTGGACCAGCGCTCTGTCACCTGTGTCTCATCCCCCAGTGGACGGAGAGCATATCAGGTGATTGGAGGGTCAGGGCTGCTGTACACCTGCTACACCTCCTGTCACTACTGCTCCTGCCCAGCCTTCGCCTACACTGTGCTCAGGAGGAACGAGAGCCTGCTGTGCAAGCACATCCTGGCCGCCTACCTCAGTCAGGCCATGGGGCTATCCCAGCAGGAGGCCCTGTCTGACCAGCAGATGTCCAGCATCCTTTCTGGGAGAGCAGCAAGAACTGACACGTAGAGCACCAGACCCCCAGGTCACTCATCCAGACCTACATTTAGAAGACCAGACCGCAGCTACAGACGCAAAGCACAGACACGTAGAGCACAACCCAACAGGTCACTGATCCAGACTCAAAGCCACGCAGCACCATCTGAGACCAAGCTACTGCAGCACATCCTGAGGAAAGATGTTTCAAAGGCAAAGCCTACTGCTGCTGTATAGTCTCCTCCAGTCTGTCTGCATGTGTGAAGATTACTTTTATGGCTTTTAGGTCATTGTGCTGTTCTTCTAGAACCCTGGTGTGGTTCTCCGCTTTCTGAAAATCAAAAGACAACAGATGTTGCTGTTTTTTGTGAGTGTTCGTGTTCTTAATCTGTTGCCAGAGAATATGCATCTGTTCattgactgtattttaagacTCTCCTTTTATATGAAAATGGTTGTTATATGTAGGTTGTGTAAACTCTTGTAAGAATATGAGTCtgaacattttatttgtattttttatttaaccaggcaagtcataCATAGCTTTTATTGACAAAATAATTCACCATACAGATTTTTCTCATGTTAAATTGCAGTATTGGTTTAGTTGTCAGTTGAGTGAAATAATAACTGAACATCATTGACGTTCagacattctactgcactgttggagctagtaacataagcatttcgctgcacctacTATAACATCAGCAAAACTGTGTACACaaccaatacactttgatttgaacCACAGTTGACTGTTTAGGCTACTGGTTAGCGACATCAATACTGTAACACATTTGCAAACGCACAGGTTGGAAAACTACATCAGCTTGTTCTTGTGTGTATGCTTCATTCACAAGTCAGGCTTGTTGAAGGCTTTACAACCCACTGTATCTTGCAGGGTTGGggcaattccatttcaattcaatcaACTCCGGAGGTAAACAAACGCCAATTCCACATTTTTCTCAGTACGAAGCATTTggggaattggaatttcagtttactgaATTGTAATGGAATTTAACCCTTATCTTGATGCTAAGGTCACATTTGAATGAACAAATAATAGTAATACCAGTACAGTGCAGTCTCCAATGGAATGTACTTGAAGTTTGGCACACTCCTATAGTTTAGCCCTTGAAGTTGTAGAGGTGATGGTTGATGTGTATGGTGAAGAAATGGAAAAACTAAGAAATTAAACACAATGGAAATAC
>XM_021623567.2
tccaaacttttgattggtactgtacatggctgtacatggtactgtacattttaaCTGACTCTAATGGTTGTCTGGTGGTTGGTCCCATTTATGCTGGGAATTTCtgaatatccacaggaaagtattattAAACAGACTTCAAAACGCTGGTAGTGCATTCAGATTTTATATCACCCATTTCTTGAACGGAACGAACCTGGGAGGGACCTACAGTGTAGCTGAATTTGTCGAATACAAACTCTCGTTTTAGTTGCAGAACGttttgtacctgttgtattcggggcatgtgacaaataaaaatttatTTGAGTAGGACATTCCAGTCACATTTTTTACTAATATCGAATGTTTTCTATTGAATTTTGGCGCCATCTACAAGGTTACAAATAGTCAAACACTTGACTACAGTAGTTGCAAGTTAAAATAACTTACCCTCCCATCCTGATGGTGGCGCCAATACATAGCTTACTTCCCCCCCGAAGAACAACGCAACAAAACCAGTTGGAAAAATACCCGGGAgttttagctaactagctatgttATTATTTTTAAATTTCCCTCTAGTAGATCAATAACTAATGAGGTAAACAACTCAGTACTTTGACCAACCTATATCGACTGGTTGACCTCTGATCAATTTTGTATCTCGTGCGCTTTGCCCATGAACGTTTTCTGGTATATTTGCTGTAGCTAATTTTTGAGATGCCTTCATTTTTACCTACGGTGGCCGAACAACTCTTCAAAGACATACAGAAGACATACCAAGAGAAAACTAAAATTCCTGATGACCTGCTTATTGCgcTGAGGTTTGTGTTTGGCTCCTGTGCCCTCCAGGCCTTGGACCTGGTGGACCAGCGCTCTGTCACCTGTGTCTCATCCCCCAGTGGACGGAGAGCATATCAGGTGATTGGAGGGTCAGGGCTGCTGTACACCTGCTACACCTCCTGTCACTACTGCTCCTGCCCAGCCTTCGCCTACACTGTGCTCAGGAGGAACGAGAGCCTGCTGTGCAAGCACATCCTGGCCGCCTACCTCAGTCAGGCCATGGGGCTATCCCAGCAGGAGGCCCTGTCTGACCAGCAGATGTCCAGCATCCTTTCTGGGAGAGCAGCAAGAACTGACACGTAGAGCACCAGACCCCCAGGTCACTCATCCAGACCTACATTTAGAAGACCAGACCGCAGCTACAGACGCAAAGCACAGACACGTAGAGCACAACCCAACAGGTCACTGATCCAGACTCAAAGCCACGCAGCACCATCTGAGACCAAGCTACTGCAGCACATCCTGAGGAAAGATGTTTCAAAGGCAAAGCCTACTGCTGCTGTATAGTCTCCTCCAGTCTGTCTGCATGTGTGAAGATTACTTTTATGGCTTTTAGGTCATTGTGCTGTTCTTCTAGAACCCTGGTGTGGTTCTCCGCTTTCTGAAAATCAAAAGACAACAGATGTTGCTGTTTTTTGTGAGTGTTCGTGTTCTTAATCTGTTGCCAGAGAATATGCATCTGTTCattgactgtattttaagacTCTCCTTTTATATGAAAATGGTTGTTATATGTAGGTTGTGTAAACTCTTGTAAGAATATGAGTCtgaacattttatttgtattttttatttaaccaggcaagtcataCATAGCTTTTATTGACAAAATAATTCACCATACAGATTTTTCTCATGTTAAATTGCAGTATTGGTTTAGTTGTCAGTTGAGTGAAATAATAACTGAACATCATTGACGTTCagacattctactgcactgttggagctagtaacataagcatttcgctgcacctacTATAACATCAGCAAAACTGTGTACACaaccaatacactttgatttgaacCACAGTTGACTGTTTAGGCTACTGGTTAGCGACATCAATACTGTAACACATTTGCAAACGCACAGGTTGGAAAACTACATCAGCTTGTTCTTGTGTGTATGCTTCATTCACAAGTCAGGCTTGTTGAAGGCTTTACAACCCACTGTATCTTGCAGGGTTGGggcaattccatttcaattcaatcaACTCCGGAGGTAAACAAACGCCAATTCCACATTTTTCTCAGTACGAAGCATTTggggaattggaatttcagtttactgaATTGTAATGGAATTTAACCCTTATCTTGATGCTAAGGTCACATTTGAATGAACAAATAATAGTAATACCAGTACAGTGCAGTCTCCAATGGAATGTACTTGAAGTTTGGCACACTCCTATAGTTTAGCCCTTGAAGTTGTAGAGGTGATGGTTGATGTGTATGGTGAAGAAATGGAAAAACTAAGAAATTAAACACAATGGAAATAC
>TU1212093
ATTTTTCTCATGTTAAATTGCAGTATTGGTTTAGTTGTCAGTTGAGTGAAATAATAACTGAACATCATTGACGTTCagacattctactgcactgttggagctagtaacataagcatttcgctgcacctacTATAACATCAGCAAAACTGTGTACACaaccaatacactttgatttgaacCACAGTTGACTGTTTAGGCTACTGGTTAGCGACATCAATACTGTAACACATTTGCAAACGCACAGGTTGGAAAACTACATCAGCTTGTTCTTGTGTGTATGCTTCATTCACAAGTCAGGCTTGTTGAAGGCTTTACAACCCACTGTATCTTGCAGGGTTGGggcaattccatttcaattcaatcaACTCCGGAGGTAAACAAACGCCAATTCCACATTTTTCTCAGTACGAAGCATTTggggaattggaatttcagtttactgaATTGTAATGGAATTTAACCCTTATCTTGATGCTAAGGTCACATTTGAATGAACAAATAATAGTAATACCAGTACAGTGCAGTCTCCAATGGAATGTACTTGAAGTTTGGCACACTCCTATAGTTTAGCCCTTGAAGTTGTAGAGGTGATGGTTGATGTGTATGGTGAAGAAATGGAAAAACTAAGAAATTAAACACAATG

Function

symbol description
zswim7 Predicted to enable zinc ion binding activity. Predicted to be involved in double-strand break repair via homologous recombination. Predicted to act upstream of or within DNA recombination and DNA repair. Predicted to be located in nucleus. Predicted to be part of Shu complex. Orthologous to human ZSWIM7 (zinc finger SWIM-type containing 7).

NR:

description
PREDICTED: zinc finger SWIM domain-containing protein 7

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937458.1 False 1826 mRNA 0.43 5 34572164 34587940
XM_021623567.2 False 2321 mRNA 0.42 5 34572164 34590518
TU1212093 True 643 lncRNA 0.38 1 34572171 34572813

Neighbor

gene id symbol gene type direction distance location
timm22 LOC106567977 coding downstream 206915 34361271 ~ 34365249 (-)
c12h11orf54 cssa13h11orf54 coding downstream 446235 34117042 ~ 34125929 (-)
akap10 LOC106567970 coding downstream 469082 34082458 ~ 34103082 (-)
LOC110537486 LOC106567973 coding downstream 490097 33877389 ~ 34082067 (-)
cltca LOC106567969 coding downstream 716691 33790655 ~ 33855473 (-)
ncor1 ncor1 coding upstream 11760 34602278 ~ 34725530 (-)
cenpv LOC107676655 coding upstream 164506 34755024 ~ 34759345 (-)
LOC110537499 emc6 coding upstream 215203 34805721 ~ 34807675 (-)
LOC110537500 LOC106567988 coding upstream 270907 34861425 ~ 34955823 (-)
LOC110537503 NA coding upstream 371077 34961595 ~ 34962959 (-)
G1064126 NA non-coding downstream 1769 34569980 ~ 34570395 (-)
G1064132 adora2b non-coding downstream 17246 34553912 ~ 34554918 (-)
G1064029 NA non-coding downstream 174246 34387993 ~ 34397918 (-)
G1063927 NA non-coding downstream 336370 34233571 ~ 34235794 (-)
G1063803 NA non-coding downstream 421348 34115538 ~ 34150816 (-)
G1064165 NA non-coding upstream 10610 34601128 ~ 34602099 (-)
G1064259 NA non-coding upstream 223689 34814207 ~ 34814810 (-)
G1064262 NA non-coding upstream 227023 34817541 ~ 34818633 (-)
G1064263 NA non-coding upstream 228548 34819066 ~ 34819374 (-)
LOC110537478 NA other downstream 864505 33667535 ~ 33707659 (-)
med13a med13 other downstream 1039523 33419083 ~ 33532690 (-)
G1062603 NA other downstream 1058789 33512925 ~ 33513375 (-)
G1062051 NA other downstream 1486098 33039485 ~ 33086066 (-)
G1061331 NA other downstream 2579609 31991210 ~ 31992555 (-)
LOC110537509 galnt10 other upstream 629017 35122172 ~ 35260534 (-)
G1064912 mrpl22 other upstream 886319 35476837 ~ 35484504 (-)
G1065969 NA other upstream 1201837 35792355 ~ 35810394 (-)
G1064140 NA non-coding upstream 3325 34576138 ~ 34576370 (-)
G1064144 NA non-coding upstream 7684 34580497 ~ 34580773 (-)

Expression


Co-expression Network