cenpv (LOC107676655)


Basic Information

Item Value
gene id cenpv
gene name LOC107676655
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 34755024 ~ 34759345 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937459.1
GGTTCTTTATCACATTCCAGTAGCCTAAAACTTTACATACCTAACACAAACATAATCTAATATTTTCACATTGATCCACTACAGAATGGTTTAATAAACACTGGACATATAGGCCTTCCTTTTATTATATATGGAATAGAtaccccactgggcaaaaacggtttaaatcaacgttgtttccaggTCATTGCAACGACAGAATTcaatgttgaatcaatgtggaaaactgagttGCCTTGTTCACGTGCTAGTTGGAACTAGGAAACCGAAATGTCCGTCTTGCTAACTGGTTGTCGTTAACAAATGCCGCGTTCAACTAATAGCAAGTTGGACATGTCCTAGATCTGACTAGCATGTGAATGCGGCAAGTGGATTTGCAAAATGTCATAAAACTAAGAGAATTTCGTCTCCCAACCTTTAAACCCAAATCCAATGAAAGGGTGACCTTTTTGTTTGATTTCACGTTGCATTCACggtagttgacaactcaaccaaatgtaaataatAACTAGAAGTTGAACTgacgtttgtgcccagtgggacaggTCTGACTGATAATGCGAAAAAACGTTTCAAATCACAAAGATGGGGAACTGATATTTAGTTTGTAATATTGTTATTAACTGGACATAATATCACCACACTTTGTAATGAATGGGGGGAAAAATTGAGTATGACAAAATGACTCACTCATGTTTCATTATCTAGTTGTAGTATTTGCACCAAGAAGCAGAACCGTCATTTCATTGTACCAAAACATCAGTTTACCCTTTTACAGGGTTGGGATCATCTGACCACATATACATTCAATACACACGCTGCCAAGCACACATTCTGTAGGATCTGTGGAGTCCAGAGTTTCTACACCCCACGCTCCAATCCTGATGGATATGGCGTAGCTCCTCACTGTCTGGACACAGGTACTGTGCGCAGTGTGACAGTAGAGAAGTTCTGTGGAAAGAAGTGGGAGGAGAGCATGCAGAACCACCAGACTATCAAAGGCATGTCCAAGCCATAGAACCAAGCCTGtagcagacacacacagctgagaTAGAAACAACCAGTCCCATATTGTATTACGGAGCCAACTGTTTGGCTCAGTAATACAAATCAACTTTCCCCAAAAAATCTTAAATAAAAAGACCAAACCTACTCTGTTTAGTCACAACCAATCTCTAAGTGTCTGTGTATTTCTTTCTGCAAGTTCACAATTCATTTCAAGTGTTCATTATGCTAAATCTTTTTTATATTGGTACTCTTTGATAGAGGCAGTGAAACCACAGTAGTTGAATGGGTCTACGGTGACAGAGCATGGCCCTCTGGTGACAAGAATGAAGAGAAGAGTATCAATATTTTGGGAAAGCATGATTCAGCATGCATGGTGAGAGTGGAGTAGAACATGGTTCAAGCAGAAGTTGGCAATGTAATGCAGAGCCATATTTAGagccatctcatattgctcacaGGCAATAAGGGACTTTCTCTCGCAATATCAACCGACAAACTACAGTAGTGCTTGAGGGATTTTAACTTGCTGACATTTCTGATCATCGATTTCAAAACATATTTAATGGAATACACTGGAATTCAATTTCATTAAACGTTGCAATGGAAAAACGGGTGGAACGAGTGAAGCACACAGGCGGATGCCATTGTGGGGCTGTCAGATTCGAAGTCTGGAATTCCCCAGACCTTCTGGTTTTCGACTGCGACTGTAGCATCTGCACCAAGAAGCAAAACCATCATTTCATTGTGCCAGAAAATCAGTTTAACCTTTTACAGGGTTTGGAGATTATCAACACATATACATTTAATACACACATTGGGAAGCACACATTTTGTAGTACCTGTGGAGTCCAGAGTTTCTTCACCCCACGTTCCAATCCAGATGGATATGGCATAGCTCCTCACTGTTTGGACCCAGGTACTGTACGCAGTGTGACAGTAGAGAAGTTCTGTGGACAGAAGTATGAGGAGACCATGAAAAACCACCCGAATATCAGAGACTTGTCCAAGCCTGTAGCagaaacacatacagttgaagtcggaagtttacatacaccttagccaaatacatttaaactcaagtttttcacaattcctgacacttaatcctagtaaaaattccc
>XM_036937462.1
GGTGGGACTGGGAATGGATCACGTGAAGCACACAGGCGCATGCCATTGTGGGGCTGTCAGATTCGAAGTCTGGAATTCCCCAGACCTTCTTGTTTTCGATTGCGAGGTTGGGATCATCTGACCACATATACATTCAATACACACGCTGCCAAGCACACATTCTGTAGGATCTGTGGAGTCCAGAGTTTCTACACCCCACGCTCCAATCCTGATGGATATGGCGTAGCTCCTCACTGTCTGGACACAGGTACTGTGCGCAGTGTGACAGTAGAGAAGTTCTGTGGAAAGAAGTGGGAGGAGAGCATGCAGAACCACCAGACTATCAAAGGCATGTCCAAGCCATAGAACCAAGCCTGtagcagacacacacagctgagaTAGAAACAACCAGTCCCATATTGTATTACGGAGCCAACTGTTTGGCTCAGTAATACAAATCAACTTTCCCCAAAAAATCTTAAATAAAAAGACCAAACCTACTCTGTTTAGTCACAACCAAT
>XM_021623570.2
TGTAATGTGGGAGAGGCATAGTTACAGAAGGTGGCAACACTGGCAGACTCGATGTGATTCCACGTAAGCAAGGGAAGTTGTTTCGCAataatgccgcgttcaaaactGGAAGCTCGGAACTGGTAACTCGGAAATCTTTTAcctccgacttcagtgcgttcaaaacaactgtgaATTCGGTAAAAACGAGCTCCTACTGGGAAAAACGATCTGaccggtcatccaactcagaattccagctcgggcctctttctagagctctgactttccgacATGAAGATCACTAAAGCCATGATTTGATCTCGTATTtctctgagttcccagttgttttgaacgcgacaTAACCTTGTTAAGTGACGCGTCACTATCTTGGTTGGTGGAATATTTCACGGAATGCAATACACTGGAATTCGCTTTCGATTCCATTGAAACGTTGCACGGGGAAACGGGTGGGACTGGGAATGGATCACGTGAAGCACACAGGCGCATGCCATTGTGGGGCTGTCAGATTCGAAGTCTGGAATTCCCCAGACCTTCTTGTTTTCGATTGCGATTGTAGTATTTGCACCAAGAAGCAGAACCGTCATTTCATTGTACCAAAACATCAGTTTACCCTTTTACAGGGTTGGGATCATCTGACCACATATACATTCAATACACACGCTGCCAAGCACACATTCTGTAGGATCTGTGGAGTCCAGAGTTTCTACACCCCACGCTCCAATCCTGATGGATATGGCGTAGCTCCTCACTGTCTGGACACAGGTACTGTGCGCAGTGTGACAGTAGAGAAGTTCTGTGGAAAGAAGTGGGAGGAGAGCATGCAGAACCACCAGACTATCAAAGGCATGTCCAAGCCATAGAACCAAGCCTGtagcagacacacacagctgagaTAGAAACAACCAGTCCCATATTGTATTACGGAGCCAACTGTTTGGCTCAGTAATACAAATCAACTTTCCCCAAAAAATCTTAAATAAAAAGACCAAACCTACTCTGTTTAGTCACAACCAAT
>TU1212126
GTAAAAACGAGCTCCTACTGGGAAAAACGATCTGaccggtcatccaactcagaattccagctcgggcctctttctagagctctgactttccgacATGAAGATCACTAAAGCCATGATTTGATCTCGTATTtctctgagttcccagttgttttgaacgcgacaTAACCTTGTTAAGTGACGCGTCACTATCTTGGTTGGTGGAATATTTCACGGAATGCAATACACTGGAATTCGCTTTCGATTCCATTGAAACGTTGCACGGGGAAACGGGTGGGACTGGGAATGGATCACGTGAAGCACACAGGCGCATGCCATTGTGGGGCTGTCAGATTCGAAGTCTGGAATTCCCCAGACCTTCTTGTTTTCGATTGCGATTGTAGTATTTGCACCAAGAAGCAGAACCGTCATTTCATTGTACCAAAACATCAGTTTACCCTTTTACAGGGTTGGGATCATCTGACCACATATACATTCAATACACACGCTGCCAAGCACACATTCTGTAGGATCTGTGGAGTCCAGAGTTTCTACACCCCACGCTCCAATCCTGATGGATATGGCGTAGCTCCTCACTGTCTGGACACAGGTACTGTGCGCAGTGTGACAGTAGAGAAGTTCTGTGGAAAGAAGTGGGAGGAGAGCATGCAGAACCACCAGACTATCAAAGGCATGTCCAAGCCATAGAACCAAGCCTGtagcagacacacacagctgagaTAGAAACAACCAGTCCCATATTGTATTACGGAGCCAACTGTTTGGCTCAGTAATACAAATCAACTTTCCCCAAAAAATCTTAAATAAAAAGACCAAAC
>TU1212127
GTAAAAACGAGCTCCTACTGGGAAAAACGATCTGaccggtcatccaactcagaattccagctcgggcctctttctagagctctgactttccgacATGAAGATCACTAAAGCCATGATTTGATCTCGTATTtctctgagttcccagttgttttgaacgcgacaTAACCTTGTTAAGTGACGCGTCACTATCTTGGTTGGTGGAATATTTCACGGAATGCAATACACTGGAATTCGCTTTCGATTCCATTGAAACGTTGCACGGGGAAACGGGTGGGACTGGGAATGGATCACGTGAAGCACACAGGCGCATGCCATTGTGGGGCTGTCAGATTCGAAGTCTGGAATTCCCCAGACCTTCTTGTTTTCGATTGCGAGTATGCCGGTTCTTTATCACATTCCAGTAGCCTAAAACTTTACATACCTAACACAAACATAATCTAATATTTTCACATTGATCCACTACAGAATGGTTTAATAAACACTGGACATATAGGCCTTCCTTTTATTATATATGGAATAGAtaccccactgggcaaaaacggtttaaatcaacgttgtttccaggTCATTGCAACGACAGAATTcaatgttgaatcaatgtggaaaactgagttGCCTTGTTCACGTGCTAGTTGGAACTAGGAAACCGAAATGTCCGTCTTGCTAACTGGTTGTCGTTAACAAATGCCGCGTTCAACTAATAGCAAGTTGGACATGTCCTAGATCTGACTAGCATGTGAATGCGGCAAGTGGATTTGCAAAATGTCATAAAACTAAGAGAATTTCGTCTCCCAACCTTTAAACCCAAATCCAATGAAAGGGTGACCTTTTTGTTTGATTTCACGTTGCATTCACggtagttgacaactcaaccaaatgtaaataatAACTAGAAGTTGAACTgacgtttgtgcccagtgggacaggTCTGACTGATAATGCGAAAAAACGTTTCAAATCACAAAGATGGGGAACTGATATTTAGTTTGTAATATTGTTATTAACTGGACATAATATCACCACACTTTGTAATGAATGGGGGGAAAAATTGAGTATGACAAAATGACTCACTCATGTTTCATTATCTAGTTGTAGTATTTGCACCAAGAAGCAGAACCGTCATTTCATTGTACCAAAACATCAGTTTACCCTTTTACAGGGTTGGGATCATCTGACCACATATACATTCAATACACACGCTGCCAAGCACACATTCTGTAGGATCTGTGGAGTCCAGAGTTTCTACACCCCACGCTCCAATCCTGATGGATATGGCGTAGCTCCTCACTGTCTGGACACAGGTACTGTGCGCAGTGTGACAGTAGAGAAGTTCTGTGGAAAGAAGTGGGAGGAGAGCATGCAGAACCACCAGACTATCAAAGGCATGTCCAAGCCATAGAACCAAGCCTGtagcagacacacacagctgagaTAGAAACAACCAGTCCCATATTGTATTACGGAGCCAACTGTTTGGCTCAGTAATACAAATCAACTTTCCCCAAAAAATCTTAAATAAAAAGACCAAAC

Function

NR:

description
centromere protein V isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937459.1 False 2129 mRNA 0.40 7 34755024 34758687
XM_036937462.1 False 500 mRNA 0.47 3 34757230 34758799
XM_021623570.2 False 1018 mRNA 0.46 5 34757230 34759345
TU1212126 False 815 TUCP 0.46 5 34757254 34759166
TU1212127 True 1530 lncRNA 0.42 4 34757254 34759166

Neighbor

gene id symbol gene type direction distance location
ncor1 ncor1 coding downstream 29494 34602278 ~ 34725530 (-)
zswim7 zswim7 coding downstream 164506 34572164 ~ 34590518 (-)
timm22 LOC106567977 coding downstream 389775 34361271 ~ 34365249 (-)
c12h11orf54 cssa13h11orf54 coding downstream 629095 34117042 ~ 34125929 (-)
akap10 LOC106567970 coding downstream 651942 34082458 ~ 34103082 (-)
LOC110537499 emc6 coding upstream 46376 34805721 ~ 34807675 (-)
LOC110537500 LOC106567988 coding upstream 102080 34861425 ~ 34955823 (-)
LOC110537503 NA coding upstream 202250 34961595 ~ 34962959 (-)
LOC110537504 LOC106567991 coding upstream 219801 34979146 ~ 35014273 (-)
LOC110537508 LOC106567994 coding upstream 312415 35071760 ~ 35114805 (-)
G1064165 NA non-coding downstream 152925 34601128 ~ 34602099 (-)
G1064144 NA non-coding downstream 174251 34580497 ~ 34580773 (-)
G1064140 NA non-coding downstream 178654 34576138 ~ 34576370 (-)
G1064126 NA non-coding downstream 184629 34569980 ~ 34570395 (-)
G1064259 NA non-coding upstream 54862 34814207 ~ 34814810 (-)
G1064262 NA non-coding upstream 58196 34817541 ~ 34818633 (-)
G1064263 NA non-coding upstream 59721 34819066 ~ 34819374 (-)
G1064264 NA non-coding upstream 62338 34821683 ~ 34821899 (-)
G1064266 NA non-coding upstream 63616 34822961 ~ 34823166 (-)
LOC110537478 NA other downstream 1047365 33667535 ~ 33707659 (-)
med13a med13 other downstream 1222383 33419083 ~ 33532690 (-)
G1062603 NA other downstream 1241649 33512925 ~ 33513375 (-)
G1062051 NA other downstream 1668958 33039485 ~ 33086066 (-)
G1061331 NA other downstream 2762469 31991210 ~ 31992555 (-)
LOC110537509 galnt10 other upstream 460190 35122172 ~ 35260534 (-)
G1064912 mrpl22 other upstream 717492 35476837 ~ 35484504 (-)
G1065969 NA other upstream 1033010 35792355 ~ 35810394 (-)
G1066054 NA other upstream 1179898 35939243 ~ 35939571 (-)

Expression


Co-expression Network