Gene
RNA
| Item | Value |
|---|---|
| gene id | ubb |
| gene name | ubb |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 34766968 ~ 34770882 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ubb | Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytoplasm and nucleus. Orthologous to several human genes including UBC (ubiquitin C). |
| description |
|---|
| ubiquitin and ribosomal protein S27a precursor, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021623571.2 | False | 2925 | mRNA | 0.52 | 2 | 34766968 | 34770882 |
| XM_036937463.1 | False | 2697 | mRNA | 0.52 | 3 | 34766968 | 34770882 |
| TU1211387 | True | 583 | TUCP | 0.39 | 3 | 34767024 | 34770876 |
34,764,000
34,765,000
34,766,000
34,767,000
34,768,000
34,769,000
34,770,000
34,770,000
34,771,000
34,772,000
34,773,000
34,774,000
34,775,000
34,776,000
NC_048576.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| pigl | pigl | coding | upstream | 13527 | 34725810 ~ 34753441 (+) |
| LOC110537491 | adora2b | coding | upstream | 200376 | 34553585 ~ 34566592 (+) |
| LOC110537489 | LOC106567978 | coding | upstream | 221231 | 34414388 ~ 34547258 (+) |
| LOC118937666 | NA | coding | upstream | 278541 | 34486074 ~ 34490407 (+) |
| abr | LOC106567975 | coding | upstream | 406959 | 34134508 ~ 34360009 (+) |
| LOC110537497 | p2rx5 | coding | downstream | 7123 | 34778005 ~ 34805469 (+) |
| shpk | shpk | coding | downstream | 36767 | 34807649 ~ 34821081 (+) |
| eral1 | eral | coding | downstream | 184107 | 34954989 ~ 34959604 (+) |
| LOC110537506 | LOC106567992 | coding | downstream | 193340 | 34964222 ~ 34982028 (+) |
| si:ch211-283g2.1 | LOC106567993 | coding | downstream | 270553 | 35041435 ~ 35069666 (+) |
| G1063408 | NA | non-coding | upstream | 79785 | 34663563 ~ 34687183 (+) |
| G1063410 | LOC106603505 | non-coding | upstream | 96506 | 34665968 ~ 34670462 (+) |
| G1063379 | LOC106603505 | non-coding | upstream | 137671 | 34628644 ~ 34629297 (+) |
| G1063363 | NA | non-coding | upstream | 166100 | 34600565 ~ 34600868 (+) |
| G1063507 | emc6 | non-coding | downstream | 34856 | 34805738 ~ 34807630 (+) |
| G1063519 | NA | non-coding | downstream | 53563 | 34824445 ~ 34824658 (+) |
| G1063549 | NA | non-coding | downstream | 90578 | 34861460 ~ 34865819 (+) |
| G1063552 | NA | non-coding | downstream | 163740 | 34934622 ~ 35022695 (+) |
| G1063601 | NA | non-coding | downstream | 190725 | 34961607 ~ 34962942 (+) |
| G1062648 | NA | other | upstream | 1105019 | 33658278 ~ 33661949 (+) |
| G1062537 | NA | other | upstream | 1258105 | 33508319 ~ 33508863 (+) |
| G1062404 | NA | other | upstream | 1400719 | 33359734 ~ 33366249 (+) |
| G1060470 | NA | other | upstream | 2955621 | 31811062 ~ 31811347 (+) |
| G1059685 | LOC106567926 | other | upstream | 3557611 | 31207629 ~ 31209357 (+) |
| LOC110524522 | LOC106605670 | other | downstream | 699618 | 35468060 ~ 35471779 (+) |
| G1064849 | NA | other | downstream | 716856 | 35487738 ~ 35488944 (+) |
| G1065619 | NA | other | downstream | 1621752 | 36392634 ~ 36393022 (+) |
| G1065620 | NA | other | downstream | 1622376 | 36393258 ~ 36393845 (+) |
