LOC110537509 (galnt10)


Basic Information

Item Value
gene id LOC110537509
gene name galnt10
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 35122172 ~ 35260534 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623602.2
CCGGAGTATGTCTTTAACTTCATATCGTAACCTGCTACGACAAAGTAACTTACACTCGTAGCTGTATTGAAGTGGTGTGTTTTTAGGGAATCTCATCATTCTTCACTACAAAGAATGCAAAAGTCTCCTTCCGTTTTGTGATCCCCCAACCAGGATATTGATTAACTCCCCCTAGCGGAAGTGCCTGCAGCTCAATAAACTACATCGTTCGTTTGATCAGAGTGAATTTGTGAAAGTTGTTTCCACCGGGAAGGAGCTGCCTGGGAATACACTGTCGACAGCTTTTCTCGCATTTCTTCAGGAGAAATGAGGCGGAAAGAAAAACGTCTACTGCAGTTCGCAGGGTTGCTTATAGCGGCTCTTCTTTTCCTGCCGAACGTTGGTCTGTGGTCATTGTATCGAGATCGAGTCTTTGAGAACTCGCCAGAAATAGTGGAGGGACCGGGTGGCATCCTTCAAATACAGGGATTGAACGTCAGGCCCCGGAATAATGCCCAGCTGGGGCGGGACGGCATGCGGAGGAAAGACTGGCACGACTACGATGCAATTAGGAGAGACGCTACTCGCTCTGgtaacgGCGAGCAGGGGAAGCCTTTTCCGCTGACCGACGCTGACCGGGTAGACCAGGCCTACAGGGAGAATGGGTTCAACATCTACGTTAGCGATAGGATCTCCCTCAATCGCTCTGTCGCAGACATCCGGCACCCAAACTGTAAACAGAAGCTGTATGCGGTGAAGTTGCCCAACACCAGCATCATCATACCATTCCACAACGAGGGCTGGTCATCCCTGCTCAGGACTGTACACAGCGTGCTCAACCGGTCCCCCCCTGAGCTCATTGCTGAGGTCATACTGGTGGACGACTTCAGCGACAAAGAGCACCTTAAGGCGTCTCTGGAGGAGTACATGGTGCGGATGCCCAAGGTGAGGATCTTGCGCACCAAGAAGAGAGAGGGGCTCATCAGGACACGTCTGCTGGGGGCGGCAGCCGCCAAGGGAGAGGTCATCACTTTCCTCGACTCGCACTGTGAAGCCAACGTCAACTGGCTGCCCCCACTGCTGGaccGTATCGCCACAAACAGGAAGTCCATTGTCTGTCCGATGATCGACGTGATCGACCATGACAACTTTGGTTATGAGACACAGGCCGGTGACGCCATGCGAGGAGCATTTGACTGGGAGATGTACTACAAACGCATCCCCATCCCCTCTGAGCTGTCAAAAGAGGACTCTAGCGAACCCTTCGAGTCTCCTGTGATGGCTGGTGGACTCTTCGCCGTGGACAGAAAGTGGTTCTGGGAGTTGGGAGGATATGACACAGGACTGGAGATCTGGGGAGGAGAGCAGTATGAGATCTCTTTCAAGgtGTGGATGTGTGGTGGGCGTATGGAGGACATCCCATGCTCCAGGGTGGGTCACATCTACAGGAAGTATGTTCCCTACAAGGTCCCCGGCGGGGTCAGCCTGGCCAGAAACCTAAAGCGAGTGGCAGAGGTGTGGATGGATGAGTATGCTGAATATATCTACCAGCGAAGGCCAGAGTACAGGCACCTGTCAGCAGGAGACATGACTGTGCAGAAGGACTTGAGGAGCAGCCTCAACTGTAAGAGCTTCAAGTGGTTCATGACAGAGGTGGCCTGGGACCTGCCCAAGCACTACCCACCTGTGGAGCCCCCTGCTGCCGCCTGGGGAGAGCTGCGCAACGTAGGCAGTGGCATGTGCATGGAGAATAAACACTTTTCGTCTGGGTCGCCCATCCGCCTGGAGACATGTCTTAAGGGGCGGGGCGAGGCTGGGTGGAGCCATGGACAGGTGTTCACGTTTGGCTGGAGGGAGGACATCCGCGTGGGGGACCCCATGCACACTAAGAAGGTGTGCTTTGATGCCATCTCCCACAACAGCCCCGTCACCCTGTATGACTGCCACGGCATGAAGGGCAACCAGCTGTGGCGCTACAGGAAGGATAAAAGTTTATACCACCACATCAGTAACAGCTGTATCGACAGCAACCCCACAGAGAGAAAGGTGTTTATGAACATGTGTGACCCCAGCGTCCCCAGCCAGCAGTGGGTGTTTGAGAAGACCAACACCACAGTGCTGGAGACATTCAACCGCAGTAACAACTGAGACCAGTAGGGGTCAGCACTGAACCTGAATACCACTCACCCAGGGACTGTGTTGTTTTACTAAGACAGAAGTGggctgttgtttctctaaaagggtctgggggggaaaggggggggggggggtagcattGGCAAGCCAGTCTAGACACATCAGTTATTGGGAGATGGAGAAAGTATGGCGCCTGAGAGGCTCGCTCTCTGTGGTGGCGGGGACTTCCTGCGTCAATGGGATTAGGTCTGGCACGGCCATTCTGAGGTTGCCCGTCTCACTTACTTATTCACGCTCCGCTCTGCTTCTCCGTGCATCTCCCAGGTGTCTCTGCCCATATGTCCATCTCCATCACCCTGCGTGAGTGCGCCTCTTACTCAGTCACTTTTTCCATTCTCCTGATTTGGAGCCACTGCTCTGACAGCCCCCCTGAGACTCTCGCTGAACCAAACCCAGACTGACACTTGGGTAAAGCCAGCCAGAAACAACCACTCTCTGCAAAGCGCCGTGTTgattcttgtttttgttttcttgctGTGCTCACTTGGCTAGCAGTTTCTCATTCTTGGTTTCCTCTTTATTGCGTTGATCAAAAGTGGAGTTGGGCAAACTGTCCAAATGTAGAAGGGAAAGAAAAGCCCCCCATCTTTTAAGAAGTACATTTTTGGATTTGAATGAAtaatactatagtagcagcactTTGTCTATTCGAAGAGCTGTGATTTGATGCCAATGATGGATCTCTTCCAGGTGATATGTCCAGAGAGGGAACTGTAAGGGCTCTAACTATTATCCCTCTGGGATAATCCCAGGCAGTCTCTGGAACGACCTCATTACGAAAACACTAAACCGTGTGGCAGAAAAACATACTGAGGTCAGCAGCACTGAGACAGTAGAGAGACCTTGGTGGCTTCCCAAACTCATCAGGAGTGTCTCTAGACTGGTTTGCACAGGGGGAGGGGTTGGTGATGGGTATTATAGGTGTTTTAAATGCATTAAGCACTTGCAATGATAAACTTGAATGACAATCTTAGTGCCTTGCTGGATGAGAGAAAAAGTATACAGCCTGGTCTGACTTGGCATGGCCTGGTGCCCTATTTCAGTCCTCCAACTTCTCCACTGTCTCAGACTGACTGAGATAGTGGAGAGGCAGGCCATCTGAGGTGACACTGGCTCTTAACCATGGATGGGTTTCTGCAACACTTATGTATATGTAATGATAGTGAATAGTTGAAGAGACTAGCAAACTATGTGTTCTCCTGCCTTTAAAAGTGAACAGCTTCCCTGCAAAGACCCTGTTTATGTTTGTGACATGTCACCATCATGCCATGTTGTTATCATCAAAACCCAGTTGGACATGCAAGCATTCATTAATATTGATTTCCTTTGTTTAGGTTTTGTCGCGTTATTACTTTCTCAGCGTTTCACATTTTCTTTAAGTGTTTTGTCTTCGTTTAATGCAAAGTTTTGACTTGGATGTTGTTCAGAATGACTGCTTACATTGCCTGCTGTGTAGTTAAGTTTTTGTTCCCCTCTTCTCCTCAGGAATAATTCCAAAGTAGAGTATGTAATATGCTTGATGCAAAGATCACACCCTTCCTTAATCTAACCATCTTCCTTACATTTTCAGAAATCGATATGAATCCAGTACACTAGTATGTGTTGTAGATTTTAACTGTTGGTCAGCAGTTTCAACTAAAAGTGTTCCTTCCATGCTTTGTGGAGACAATTTGGAGAAGTTCTATAAGAGAAAATCTACGTGGCACATTGGTAAGAGATGCTGCACGATATGGCTTTGTTCAACTTTACTTATGAAGGGTCTTTATTGCAAAATCgtgtaataatgttgtatatGTCCCTTCTTATTAAACTGAAATGTAGGACTGGCTGGGGAATGCAAAATTGCTCACTTTCTTTGGTTTCACTTTCTATAAATGTTCATAGTTTTACCCAGGCAAGTAAGCAGCATGTATGGAAAACCAAAGCTGTTCAAAACACTTTTTTTGAGGACATtgaacaagttttttttttgtttgttatttgttTTTTATCCCTGTCTTTGAGTTTTGCGTGTTCTTTTTGCAATCCAAAATATAGAATGTCTGGCTATTCCAGCTAAATAGATTTCACAATTATGCTAACATAAATATTATATCTTTGCTAGTTGATGATTATATCTGTGCTAGTTGATGAATTGTCCCTTCTCTTTTACACTAATATTATTAGTGAAGTAGCAAAATAACTTCACATGGTTTAAATTACTATAATTGAACTATGGCTGGAATTCAATCAAACCGTCACTGCGGGGAGAAGAAATGAGACCATGTCCATTGATGGAAACTTTAAAACCCCCATTTTGATTTATGCTTTTTCTCTTGTGATACATTGATCTATGTTCTCCTAAAATGCTCCACCAGACAGTCCAGGACTGCAATGCCAGAATGGATCGATCGAAACATGTTTACTTTAAAGCATTGGCGTTTATGGAGTAATGCTATGTTTGTGTCTTGAGGGAGTAAACAGGGTTGTTGTACCTGTTGACGAATGATCATCTTGCAAAGGTGGTAAGACTCCCCCCAAATCCATGGCAGTTTATTGAATACTTAGTAGGCTGTTTAGAACAAGGATATTTTCAGTACATTGACCCTGTCCATTGCACATGTAAAGAGCATTTTATTTTGATTATGTCATGATTTATAACTTGGGTTGGAAgtcgtaaaaaaaaatgtaattgtggTTTTAAGCGACATTTTATACAGTGCAATTTTTTCATGATCTTGTGTTGGAATTCAATATTGAGCTAAAATGTGAAGACAATactactttttttaaataaaagtgtGTAATGTTTAAGACCATTGTTGGTCATTCACACAATGCTATGTACATGTGTATGCAATTTTTATTTGTAGGGAAGTGTACATTTTGTATCATGAATATCCAATATTTTTTTCTACTGACATAATGACTGTAAAAGTGTATTTAGGTGTTTTAAAACACTGTGTACAACTAAACTGGAATTGTGTAATATTTTTTGCTgaaattgtaaaataaatgtttctaTATTTGAA
>TU1212669
GCCAGAATCAAAATTTGCATGACCATCAGGGCGAGGCTTGGACTATGAGGTCTTCACCGCAGGGATTGAACGTCAGGCCCCGGAATAATGCCCAGCTGGGGCGGGACGGCATGCGGAGGAAAGACTGGCACGACTACGATGCAATTAGGAGAGACGCTACTCGCTCTGgtaacgGCGAGCAGGGGAAGCCTTTTCCGCTGACCGACGCTGACCGGGTAGACCAGGCCTACAGGGAGAATGGGTTCAACATCTACGTTAGCGATAGGATCTCCCTCAATCGCTCTGTCGCAGACATCCGGCACCCAAAGTGAGTGTCTTTTTCGCTTTTTATTACTCCACTTGTCAACTCACACATTCCTCCCTAAAGATGAGTATAGTTTAGTCACAGTTGTTTCACATTCTCCTGATGATGCATAAGCAAAATAACTATGAGCATTATGTGTAAGGTGTTTTTCTCCTAATGGCTTGGTGTAATTTGTATTTCATTCCTATTTGAAGATGTAGCTACTTTCCTTATAAGCCAATGAGTGAAAGGGGACTATGCTTTAGCTTTAATCATGCATTTAGCTTTCTTTCAAATCGCTGTTGGGTCAGTGCCATGAATCCTCTTAGACCAGTTTTCCCAGTATTTTGTATGTCTCTGACATATGAACACAGTTTTGCCCAGAGGACATGCTTGTCGGACTCTTCACCTCTTCCATACTTACTCACTCTTCTCTCTAAACTCTGTCACTTTTCTCTTCATGTCCTTTACAAAGAAAGGAGCTGTCAATTGGGACCTTGAATTGCATTTACCTTAACAATTCAGCAGGAGTCTGATCTTCGATTCCTCGTTCCCTGCTCTTTCCTTTCCCTGTTCTATGTCTATGAGGACAATTACAAAACCCTAACCAATACTCTGACCTTCTATTCCCC

Function

symbol description
galnt10 Predicted to be active in Golgi apparatus. Orthologous to human GALNT10 (polypeptide N-acetylgalactosaminyltransferase 10).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623602.2 False 5186 mRNA 0.46 12 35122172 35258937
TU1212669 True 915 TUCP 0.45 3 35219535 35260534

Neighbor

gene id symbol gene type direction distance location
LOC110537508 LOC106567994 coding downstream 7367 35071760 ~ 35114805 (-)
LOC110537504 LOC106567991 coding downstream 107899 34979146 ~ 35014273 (-)
LOC110537503 NA coding downstream 159213 34961595 ~ 34962959 (-)
LOC110537500 LOC106567988 coding downstream 166349 34861425 ~ 34955823 (-)
LOC110537499 emc6 coding downstream 314497 34805721 ~ 34807675 (-)
LOC110537510 mfap3 coding upstream 137947 35396884 ~ 35401227 (-)
LOC110537516 LOC106568002 coding upstream 1033770 36292707 ~ 36310874 (-)
LOC110537517 wwc1 coding upstream 1052178 36311115 ~ 36358023 (-)
LOC110537518 LOC106568005 coding upstream 1138661 36397598 ~ 36400542 (-)
LOC110539141 NA coding upstream 1153315 36412165 ~ 36413564 (-)
G1064667 NA non-coding downstream 1519 35120381 ~ 35120653 (-)
G1064666 NA non-coding downstream 2565 35119143 ~ 35119607 (-)
G1064664 NA non-coding downstream 6925 35115022 ~ 35115247 (-)
G1064658 NA non-coding downstream 14310 35107386 ~ 35107862 (-)
G1064629 NA non-coding downstream 51834 35070053 ~ 35070338 (-)
G1064788 NA non-coding upstream 80944 35339881 ~ 35344998 (-)
G1064815 NA non-coding upstream 122507 35381444 ~ 35381648 (-)
G1064845 NA non-coding upstream 146625 35405562 ~ 35405844 (-)
G1064905 fam114a2 non-coding upstream 148798 35407735 ~ 35408683 (-)
G1064904 NA non-coding upstream 158337 35417274 ~ 35418071 (-)
cenpv LOC107676655 other downstream 363006 34755024 ~ 34759345 (-)
LOC110537478 NA other downstream 1414513 33667535 ~ 33707659 (-)
med13a med13 other downstream 1589531 33419083 ~ 33532690 (-)
G1062603 NA other downstream 1608797 33512925 ~ 33513375 (-)
G1064912 mrpl22 other upstream 217900 35476837 ~ 35484504 (-)
G1065969 NA other upstream 533418 35792355 ~ 35810394 (-)
G1066054 NA other upstream 680306 35939243 ~ 35939571 (-)
G1066163 NA other upstream 840093 36099030 ~ 36099474 (-)
G1067390 LOC106568016 other upstream 1650494 36909431 ~ 36912757 (-)

Expression


Co-expression Network