LOC110537516 (LOC106568002)


Basic Information

Item Value
gene id LOC110537516
gene name LOC106568002
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 36292707 ~ 36310874 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623620.2
CATTTAACTTCAATGCCTCTTCCTCATCTAAGCCGGGTTCAACTCGCATTCAAAAGAAAGTAATTTAGCAACAGAAGCAAACGCTAATTTACTGTTCTATACTTTACTGAAAATGGGAGATCCTGTGGCTGGTTACACGTCCCGAATTCAACAGCAGGAGCTGGAGATCCATTCCCTGACTGCAGAGCTTGAGAGCCTGAAGAACCCACAGGGCCTGGGTTTGTCCTCGCACCTggatgggctgagagaggagaATGCCAAGCTCAAATACCGCCTCAATGTCCTCAAAAGGAgtctgcaggaggagaggagccagtgtAGTAAAACCATGATGAACATCAACCAGCGCCTGCAGGAGATCTTTGGGGAGGCCATCCGGGAGGCCTGTCCCGACCTGGAGAACCCTCCCCTGGCCGTCACCCCCAACCAGCAGGCCAAGTTTGGGGACTACCAGTGTAACAGCGCTATGGCCATGGCCCAGATGATGAAATCAAAGGGCCTGAAAGTGAACCCCAGGCAGATCGCTGAGAATATTCAGCAGAACATTCCTGACAATGAGCTCATTGAGAAGACAGAAATAGCTGGACCAGGGTTCATCAATGTTCACCTTAAGAGATCGTTTGTGTCCAAACTGCTGACCAACCTGCTACTCAACGGTGTCCAACCTCCTCCCTTAGAGAGCAAGAAGAAGGTGGTTGTGGACTTCTCATCTCCTAACATCGCCAAGGAGATGCACGTAGGTCACCTGCGCTCCACAATCATTGGGGACAGCATGTGTCGTCTCTTTGAGTTCCTGGGCTACGACGTCTTGAGGCTGAATCACGTAGGGGACTGGGGCACCCAGTTTGGGATGCTCATCGCTCACCTGCAAGACAAGTTCCCAAACTACCTGACCGTATCCCCTCCTATCGGAGACCTGCAGGCCTTCTACAAAGAGTCTAAGAAGCGTTTTGACGAGGAGGAAGACTTTAAGAAGAGGGCCTACCAGTGTGTGGTCAAGCTGCAGAGCAAAGACCCAGCTTTCATCAAAGGATGGAACCTCATCTGTGACGTTTCCAGGAATGAATTCCAGAAGGTCTACAACTGTCTGGACATCCAGATCATCGAGAGAGGAGAGTCCTTCTACCAGGAGAAGATGACCGCCGTGGTCAAAGAGTTTGAGGCCAAAGgccTGGTGGAGATGGATGAGGGCCGTAAGATAGTGTTTGCCCCGGGCCAGCAGATCCCCCTGACGGTGGTGAAGTCTGATGGTGGCTACACCTACGACACATCAGACCTGGCCGCACTGCGCCACCGGCTCTTTGACGAGAAGGCAGACATCATCATCTACGTGACGGACAGCGGCCAGGGCACCCACTTCCAGGTAGTGTTTGCAGCGGCTCAGATGATTGGCTGGTACGACCCCAATGTGACACGAGTGGAGCACGCTGGTTTCGGAGTGGTGCTGGGAGAGGACAAAAAGAAGTTTAAGACTCGCTCCGGGGACACGGTGAGGCTGATGGACCTGCTGGATGAAGGCCTGAAGAGGTCCATGGACAAACTCAAGGAGAAGGACAGGGACAAGGTTCTGAGCACGGAGGATCTGACCAAGGCCCAGCGTTCGGTGGCGTTCGGCTGCATCAAGTATGCCGACCTGTCTCACAACCGCATCAACGACTACGTGTTCTCCTTCGACAAAATGCTGGATGACCGGGGCAACACGGCCGCCTACCTCCTCTACGCCTTCACCCGCATCAGGTCCATAGCCCGGTTGGCTAACATCGACGAGGCAGCGCTCCGTAAAGCAGCAGAGACCACGGAGGTGCTCTTGGAACACGACAAGGAGTGGAAGTTGGGCAAGTGTCTCCTGCGCTTCCCTGAGATCCTGCAGAAGATCCTGGATGACCTGCTGCTCCACACGCTGTGTGACTACCTGTATGAGCTGGCCACGACCTTCACAGAGTTCTACGACAGCTGTTACTGTATCGAGAAGGACCGCCAGACAGGTGAGGTGGTAAAGGTCAACATGTGGAGGATGCTCCTGTGTGATGCCACTGCCGCCATCATGGCCAAAGGCTTCGACATCCTGGGCATCAACCCTGTCTCCAGGATGTGACCTCATCAcagtgacatcacaatgccctcctcccatctcctcggACGACAGAAAAAAAAGCCTCTTCAACCCATTAACGTCACCTGGGATCTTACTGTataccaaataaaataaaaattactgCTTGTAAAAAAGAAAAA

Function

NR:

description
arginine--tRNA ligase, cytoplasmic-like

GO:

id name namespace
GO:0006420 arginyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004814 arginine-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K01887 RARS, argS; arginyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623620.2 True 2235 mRNA 0.53 15 36292707 36310874

Neighbor

gene id symbol gene type direction distance location
LOC110537510 mfap3 coding downstream 891480 35396884 ~ 35401227 (-)
LOC110537509 galnt10 coding downstream 1033770 35122172 ~ 35260534 (-)
LOC110537508 LOC106567994 coding downstream 1177902 35071760 ~ 35114805 (-)
LOC110537504 LOC106567991 coding downstream 1278434 34979146 ~ 35014273 (-)
LOC110537503 NA coding downstream 1329748 34961595 ~ 34962959 (-)
LOC110537517 wwc1 coding upstream 241 36311115 ~ 36358023 (-)
LOC110537518 LOC106568005 coding upstream 86724 36397598 ~ 36400542 (-)
LOC110539141 NA coding upstream 101378 36412165 ~ 36413564 (-)
LOC110537521 LOC106568007 coding upstream 202319 36513193 ~ 36620615 (-)
LOC110537522 LOC106568008 coding upstream 318885 36629759 ~ 36641133 (-)
G1066257 NA non-coding downstream 22396 36270087 ~ 36270311 (-)
G1066254 NA non-coding downstream 25305 36267160 ~ 36267402 (-)
G1066253 NA non-coding downstream 26398 36265967 ~ 36266309 (-)
G1066248 NA non-coding downstream 34233 36258246 ~ 36258474 (-)
G1066247 NA non-coding downstream 34797 36257690 ~ 36257910 (-)
G1066315 NA non-coding upstream 67914 36378788 ~ 36379183 (-)
G1066291 NA non-coding upstream 85252 36396126 ~ 36660076 (-)
G1066331 LOC106568006 non-coding upstream 103212 36414086 ~ 36444481 (-)
G1066338 NA non-coding upstream 137322 36448196 ~ 36449810 (-)
G1066163 NA other downstream 193233 36099030 ~ 36099474 (-)
G1066054 NA other downstream 353136 35939243 ~ 35939571 (-)
G1065969 NA other downstream 482313 35792355 ~ 35810394 (-)
G1064912 mrpl22 other downstream 808203 35476837 ~ 35484504 (-)
G1067390 LOC106568016 other upstream 598557 36909431 ~ 36912757 (-)
G1067426 NA other upstream 626445 36937319 ~ 36937979 (-)
LOC110537534 LOC106568022 other upstream 709127 37019987 ~ 37039930 (-)
LOC110537540 LOC106567738 other upstream 1195006 37505206 ~ 37507238 (-)
LOC110537546 ppm1e other upstream 1292291 37603158 ~ 37667366 (-)

Expression


Co-expression Network