LOC110539141


Basic Information

Item Value
gene id LOC110539141
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 36412165 ~ 36413564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475871.2
ctgcaactcccatactgACTCggtagaggtgaaggtcgagagccatgcgtcctccgaaacacgaccccaccaatccgcactgcttcttgacacactgctcgcttgaCCCAGAAGCcacccgcaccaatgtgtcggaggaaacactggtGACCGTGTCCGCGTGCATGTGCCCGGCCAGCCACAAGTAGtctctagagcgcgatgggacaaagaCAGCCAGCCGgacaaaccctcctctaacccggacaacgctgggccaattgtacaccgcctcatgggtctcctgtcacggccggctgtgacccagGGACATCTAGAGGCATGGCATTGCATTAACAAGAATCCCCCTGTCCCATCTGCTCCTGCTACACCCCCTAGTGGACATCCGAAGTCTCATTGACCTGCAGCCATTCCCCcagttctctccctcttcttcgcTCTCTATGTGTGcgattgtgtggttggagacaggtgtgctggagtcaaaGCAGTTCCCCACCACCTGCAGcccgttccataatcaagacctctataaatactcagtcctgccactgccacttccactctgccagatcgtaatcgCCGTTCAGTCAGTCATGCTTCTAGCAATTTGTTGTTATTTAATATCCTGCTGTGCCTATTTCCTTGCGTGACACTGTTTCTCCTCTCGCTGCTGTTTTGCCACTCTGGTTCCTGTCTCCTGCTACACATCTCACTACCCTGTTCTGGactcaccacaccaccactcccttggattcccctccggacctgtttaccctgtcccaacccagctcactccaacctcagcctccaCATCTGGTTTCCTACAACTCATCCAAGCCTCCCTGGATCTGCACTTCAGTTCTCCATGTGTTACAATAAATATattggttcattca
>TU1214504
ctcccatactgACTCggtagaggtgaaggtcgagagccatgcgtcctccgaaacacgaccccaccaatccgcactgcttcttgacacactgctcgcttgaCCCAGAAGCcacccgcaccaatgtgtcggaggaaacactggtGACCGTGTCCGCGTGCATGTGCCCGGCCAGCCACAAGTAGtctctagagcgcgatgggacaaagaCAGCCAGCCGgacaaaccctcctctaacccggacaacgctgggccaattgtacaccgcctcatgggtctcctgtcacggccggctgtgacccagGGACATCTAGAGGCATGGCATTGCATTAACAAGAATCCCCCTGTCCCATCTGCTCCTGCTACACCCCCTAGTGGACATCCGAAGTCTCATTGACCTGCAGCCATTCCCCcagttctctccctcttcttcgcTCTCTATGTGTGcgattgtgtggttggagacaggtgtgctggagtcaaaGCAGTTCCCCACCACCTGCAGcccgttccataatcaagacctctataaatactcagtcctgccactgccacttccactctgccagatcgtaatcgCCGTTCActcactccaacctcagcctccaCATCTGGTTTCCTACAACTCATCCAAGCCTCCCTGGATCTGCACTTCAGTTCTCCATGTGTTACAATAAATATattggttcattcatccctgtttcctggtctgagtctgctcttgggttcccctgtgctGCGCCGCTTAACACCTCCTTGACCATTGTGTGTCTCTTTTTTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475871.2 False 899 mRNA 0.54 2 36412252 36413564
TU1214504 True 778 lncRNA 0.54 3 36412165 36413558

Neighbor

gene id symbol gene type direction distance location
LOC110537518 LOC106568005 coding downstream 11710 36397598 ~ 36400542 (-)
LOC110537517 wwc1 coding downstream 54229 36311115 ~ 36358023 (-)
LOC110537516 LOC106568002 coding downstream 101378 36292707 ~ 36310874 (-)
LOC110537510 mfap3 coding downstream 1011025 35396884 ~ 35401227 (-)
LOC110537509 galnt10 coding downstream 1153315 35122172 ~ 35260534 (-)
LOC110537521 LOC106568007 coding upstream 99629 36513193 ~ 36620615 (-)
LOC110537522 LOC106568008 coding upstream 216195 36629759 ~ 36641133 (-)
LOC110537523 LOC106568009 coding upstream 231505 36645069 ~ 36654649 (-)
LOC110537524 LOC106568011 coding upstream 256940 36670504 ~ 36700574 (-)
LOC110537525 NA coding upstream 293955 36707448 ~ 36709032 (-)
G1066315 NA non-coding downstream 33069 36378788 ~ 36379183 (-)
G1066257 NA non-coding downstream 141941 36270087 ~ 36270311 (-)
G1066254 NA non-coding downstream 144850 36267160 ~ 36267402 (-)
G1066253 NA non-coding downstream 145943 36265967 ~ 36266309 (-)
G1066248 NA non-coding downstream 153778 36258246 ~ 36258474 (-)
G1066331 LOC106568006 non-coding upstream 522 36414086 ~ 36444481 (-)
G1066338 NA non-coding upstream 34632 36448196 ~ 36449810 (-)
G1066335 NA non-coding upstream 53934 36467498 ~ 36473377 (-)
G1066438 LOC100136012 non-coding upstream 202979 36616543 ~ 36741034 (-)
G1066163 NA other downstream 312778 36099030 ~ 36099474 (-)
G1066054 NA other downstream 472681 35939243 ~ 35939571 (-)
G1065969 NA other downstream 601858 35792355 ~ 35810394 (-)
G1064912 mrpl22 other downstream 927748 35476837 ~ 35484504 (-)
G1067390 LOC106568016 other upstream 495867 36909431 ~ 36912757 (-)
G1067426 NA other upstream 523755 36937319 ~ 36937979 (-)
LOC110537534 LOC106568022 other upstream 606437 37019987 ~ 37039930 (-)
LOC110537540 LOC106567738 other upstream 1092316 37505206 ~ 37507238 (-)
LOC110537546 ppm1e other upstream 1189601 37603158 ~ 37667366 (-)

Expression


Co-expression Network