LOC110537522 (LOC106568008)


Basic Information

Item Value
gene id LOC110537522
gene name LOC106568008
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 36629759 ~ 36641133 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623627.2
TTTCACAAAAAAAGAGAAACCTTTTCTTCTTGAGCATTTGTTTGTGTGCCGGTGAGTTCCCGGCTGTGTAACTTGATAGGGGGCTCTGAGAGGGAATAAGGGAATGTGTTACTGCAATGGAGCAGAATGCAATACAGtGGTTAGGTGCTCCCTCCTACCTGCGCGGCTCATTTGCCTTCTATAAGTCAGTGAGCTGTGGGTCCGGGTCCGCTGCTCAGGTCTGGAAACTGGGGGAGTTCTACTATGTACGCTGTGGCCCTGAAGAACCTGTGGGCATTGCTGAGGTGATGTTACTGTGGGAGGACCAGGCCCAGTGCCATCTGCTGGCCAGCTCCAGACTCTACTTCCTCCCTGAGGATACTCCCAAAGGCAGAACCAGAGAGCATGGCGAGGATGAGGTGTTGGCTGTCTCTAAGAAGATAGTGGTGCGGGTGGAGGATCTGGTGAGGTGGACCTGTCCGGAACCTCAAGGTTGGAAAGGAGGCAGCCAGAAGTCCAGCAGGACCAACGGTCATCACAAACCCACCCCTATCATTACCAACGGAGCCCCAACGCCATTCAAAGAGAAGGCTGAGAGTGAGCGTCTAGGGGTCAAGGTGCTCAGCTACCCCCAGTACTGCCGCTTCCGCGCCCTGCAGAGGCGCATCCAGGACGAGGTAGGGTTGGGACTCCAGAACCCCCATCTGCTGGCCCTGGGAGGGATCAGGGTGGCCCAACACAACACACAAGTCCTCTATTGCCGGGATACTTTCAACCACCCCACCCTGGACAGCAACACCAGTGTCTGGACACAGCTGGGATGCACCTCTCTTAGCTTGAAGGGGCGACCCCGCAAGAGGAGAGGCAGGCCAGAAGGCCAGAAAGCTATGGAGCCACCAGCCCTCAACCAATCAGAGTCCTGGATAGAGAGAATGAAGGAGAATGTGATGGGCAGTGTGGAGATGCACTGTGAGGAGGGCTGTCTCCCCCACTCTGATGAGCAGCTGTTCCTGGATCAACTCTACTGCTACATGGAGCGCTGCGGCTCACCCATCAGCAAGGTTCCCAACCTCGGCTTCAAGAAGATTGACCTGTTTGTCATGTACTCTGTAGTCAAACGGCTGGGCGGCCATGAGAGGGTGACGTCCCAGCGTCTGTGGAAGAAAGTGTATAATGAACTAGGAGGATGCCCGGGCAGCACCAGCGCAGCCACCTGCACACGGAGGCACTATGAGAGGCTGATGCTTCCCTATGAGGAGCACATACATGGAAGAGGAGCAGAACTCAAACTCCCAGCATCCACTGGGCCTATCCGGGGCAGGGGGAGGAGACCGCTGGTGAAGAAGACTGcaacccccacccctcctccaacTATTTCTCCAGACGGTGTGGTGGTAGTGAAGAGGGGCAGGGGCAGACCTCCAGGCAAAAAGAACCAGGCCAAACTTCTAGCCTCCAAGGCCAGTCCAGTGGTCCTGTctcccccagccaaacccagccTGGACCTAGGGTCCAAACCCCTGCAGGACCCCTCTCTCCAGTCCATGTCTGTGTTCCAGGGGCTAAACCTGGCCAACATGCCACTAACCCCAGAACTGTCCCCCATGTCtgcccccttcctccccctcctgccCAAGAGGGAGGTAAAGGTGGCGAACGGGGATACTCAAGCACCATCACCCACTCTGTCTCCTGCAAATCTCCTGTCTGATCTCCCCAGGCTCCACGCAGCGGGCTCCCTAGGAGGGTTCAGGCCCTCTAAAAGCCCCTGTCCCCTGGATCTCTTTAGGAGCCGACTGGGCCTCAATAGCTTAGACAGCCCTGGTCTAAACACCCAGGACCCTGCCTCCCACCAGCCCTCAAGCTTCCACCTCCAGGCCAAGGCAGGGAGCTCAGAAACCCCCGTTCCCAATGGGGACCAGCCCCATCTGCAGTCTCACCACCAGTGTTTGGGGTGTGGGCTTGATGAGGCAGCCCAGGGGGGGGGGAACAGCAGTACTAGCACCAGGGAGGGCCGTAGCAGCAGGcctcccctgccccctctccGGGTCCTACCCCTGGATCTGGACTGCAGCCTGCAGGTGCGCCAGCTGATGCATACACGGCTGGGCTTGGCCCAGCTTCACTCCTTCACCAAGCGGCTGTCGGAGGTCTTAGCCCAGGACCTGAGTGGCAAGCCCTGTCTACCCATCACCCCTCCCCCAGAGCAGGCCCTACCGCTCAACCTCAGCAAGCGCTCCACCACCAGAAGATCTGCCTCTGATACTGGCTCCTGGATGGCTGCAGGGGATCAGGAAAATGGTGACACCACACTCCCCTTAGCTAAAAGGCATAGAATGGAGTCGTGCGAGGAGGCTGAGGACCTGAGCTCACCCAGCAGGGCAAGGGCTTTCCTCCTGGAGCTGCCTTGTCACACCACCAGCCCAGACACCAATTCTCCATCTCCCCAGCTCTGCCTCACCAAGTCTGGGGAAGGTTCTGGAGACACCCCTCTGGAGAACCAGGGCAGGACGTCTGACTCTGAGCCAGTAATCCAGGTGAAGGTGgaagaggactggagggagagcaGCTTTGTGGAGGTGGAGCCTGTGGAAGACTGCTCTGTaagaacagaacaggagagggtggagaaagagggaggaaataTAAAGATGTGGGAGAATGGGAAAGAAGAGAAGATGGCAGTTGAAACTGTTCAAATGGAGGATGGTATACAACAGCAATCGGAGGAGGGAGAAAAGGCAGTAGTGGAGGGGAGTAAACTGGAGAGGGTAGAAGAAGAGGGTAAAACCATAAATATGGAGGATGCTATATCAGAGAGGGGACTGAGGACTCCTTAGCCCACTCTACAAGTGGCTCTGGGGGCCaacaggaggatgaggagatgtgATGTTGAGGCTTCTGTCAAAGGGCTGCCCAGTTCTGTCCTGCCTCCAACCCAGGCCCAGCCAAGGTACCTGAACAACTGCACACAACCCCAACAGCCTCACGACTAACACCGACAAtcactcctccactctcccttATGGGAGGTAACTCTCAAACATACAATCAAAGACTAAAATCCTGTGAACTCAGTAACGACACACACACCTTTGAAAACACTGCCATTTGCCTTGACACTATTCAATGATCTAATTCTGTACATTGTATGATACTATGCATAATACAACTTTCGGGCTTCATCTAACTTGAATTATGTAGTTATATTAAAGCTTAACTTGTATTCTACGTTCGTAGGAAATACTgtagttttttttcttttctttttactgttaaatgaagtATATTACAAAACAATCAGTAGGTCAGAGGTTTTTATAACAATCCACTCCCTTCCTGGACCAAGTtttccaaaagcatcttaaggagaagttcatcgttagaaccataGGATCAAGGATACAAAAAGATGTGCCTTAAATCTCTTGTGCTCTGATTTGTAGTCATTCACGGAGTCACACAAATGGCAACAACCAGGAAAACATCTGATTGTTTTCCAGTAGTGCCCTTCAGTCTTGCATTTATTACTTCCTGTTTGTTTCCAACGACGGCAGGATTTGCACTCCTACTGTACTGGTTCCCTTTCCTTCCTTTTATGCGGAAGTCACTTAcaatatttattatttaacttTCTGATGCCAATTGTAATGTATTTTTAATGTCTGTCTAGTTTCAAAAACAATATTCTGACACCACTGGCCTGGTTAACGTGAGATTTAGTCGTTGTTGCCTTATTCCGAGTCAATTGACACCAGTAATTCTGTCAGACAGATATCTGAAATGCCATGTTTTGTTTACGGTAAACTGGGGTGTTCCCAGACCAGATGTACAGTAGCAGGGGGATTTTATTGACTATCAACACCAAATGTGTTACTGTATGATTACCATAAAGAGAGTAAAGGTTCTCGGCTGTAGAATTTTACAAAAAATTTAACTTTTCTAAAACCTACAAAAAAAAGTTTTCCTGTTGATATCCTTATTAAATATTTGGTTAAACAATTA

Function

NR:

description
AT-rich interactive domain-containing protein 5B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623627.2 True 3984 mRNA 0.52 10 36629759 36641133

Neighbor

gene id symbol gene type direction distance location
LOC110537521 LOC106568007 coding downstream 9144 36513193 ~ 36620615 (-)
LOC110539141 NA coding downstream 216195 36412165 ~ 36413564 (-)
LOC110537518 LOC106568005 coding downstream 229217 36397598 ~ 36400542 (-)
LOC110537517 wwc1 coding downstream 271736 36311115 ~ 36358023 (-)
LOC110537516 LOC106568002 coding downstream 318885 36292707 ~ 36310874 (-)
LOC110537523 LOC106568009 coding upstream 3936 36645069 ~ 36654649 (-)
LOC110537524 LOC106568011 coding upstream 29371 36670504 ~ 36700574 (-)
LOC110537525 NA coding upstream 66386 36707448 ~ 36709032 (-)
fgfr4 LOC106568015 coding upstream 129115 36770248 ~ 36789915 (-)
rab24 LOC106568018 coding upstream 273678 36914811 ~ 36921183 (-)
G1066335 NA non-coding downstream 156382 36467498 ~ 36473377 (-)
G1066338 NA non-coding downstream 179949 36448196 ~ 36449810 (-)
G1066331 LOC106568006 non-coding downstream 185278 36414086 ~ 36444481 (-)
G1066587 NA non-coding upstream 212506 36853639 ~ 36853868 (-)
G1066588 NA non-coding upstream 213317 36854450 ~ 36854703 (-)
G1066593 NA non-coding upstream 219150 36860283 ~ 36860562 (-)
G1067400 NA non-coding upstream 241192 36882325 ~ 36882600 (-)
G1066163 NA other downstream 530285 36099030 ~ 36099474 (-)
G1066054 NA other downstream 690188 35939243 ~ 35939571 (-)
G1065969 NA other downstream 819365 35792355 ~ 35810394 (-)
G1064912 mrpl22 other downstream 1145255 35476837 ~ 35484504 (-)
LOC110537509 galnt10 other downstream 1369225 35122172 ~ 35260534 (-)
G1067390 LOC106568016 other upstream 268298 36909431 ~ 36912757 (-)
G1067426 NA other upstream 296186 36937319 ~ 36937979 (-)
LOC110537534 LOC106568022 other upstream 378868 37019987 ~ 37039930 (-)
LOC110537540 LOC106567738 other upstream 864747 37505206 ~ 37507238 (-)
LOC110537546 ppm1e other upstream 962032 37603158 ~ 37667366 (-)

Expression


Co-expression Network