LOC110537525


Basic Information

Item Value
gene id LOC110537525
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 36707448 ~ 36709032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475644.2
ACCAGGGCTCGACCAGTCTCCCCCTGATGGCTGACCTGCTATAGGCCACAATTATGACGACATTTTGTGAAATTTGTGTTCGGCGAGGGTTTTGACTGCTGTTCGTGCACACTACATTTTGTTCTGGAGGCCAGCCGAAGTTCGGGAGCCGAAGTATATGCCCCTTCGTCCTTGATTGGTCAACTGTAAGGGTGACGTAAGTTTATTCTTCTTCAGCCCGAAACTCATAGGTGGCGGCAACACACCCGGTGTAGTCTACCATACAACTTTAAAGAAGAAGAAGCCCTAAACTCAGTGTGTATTCAACATGGCGAACAACAACTTCAagcataaaaaacaacaacaacttcaAGCATCGATTGACCGAGAAGGTACAGAAGTACCTTAACCAGTACAATTATAGCCTTGCATTATATAAAGAACAGCATGTAAATGTAAATTAATGGAGGGTGATTGCGGAAACGCTGGGGTCCGATCCAACCACTTGTTTGGAAAAAGTGGGGTATGGTTCGCAACAAGTTTGTCAAGGCAAAGAAAAGAAACAAGGGCCACAGTGGAAATGCTTGTGGAAAAGCTACTACAGAAATGTTGCTGCTGGCTTGTTCAGCACGGGAAGACTGAAAGCAACATCATGTCTTCACCAAAGGATGAGAGGCACAAACACCAGTGAATGGAGACATCACCTGGTTTTGTTCTCTGCGCCCCAGCACTGCCTGTTCACCGGCCCCAAACACTACCTCTCCAGACACTCTTAATTCCCTCTCCGCAGGGCCCTGGCACCTACAGCTGACTTCATGGATGAACTCTTGCCAAAACTCTGGGAGAAACTTGATCACCAGCTGTAAGACAAGAGGAGGATGTAGTCTGAACTACTGGGACTACAGTGAAATTAAGTTTGGTTGTTGTTCAGACATCTCAGAAGTCAGACACATTTGTTTCCATAGACACTTGTTTACATGTCTGTTCTCAGCAGACACTTTTGTACTGTGGCTTACTTTCAGAGCCCAGAAGCAAGAATAAAGGTTGATTTATGTGTGCTGAAAAA
>TU1214677
TTTTGACTGCTGTTCGTGCACACTACATTTTGTTCTGGAGGCCAGCCGAAGTTCGGGAGCCGAAGTATATGCCCCTTCGTCCTTGATTGGTCAACTGTAAGGGTGACGTAAGTTTATTCTTCTTCAGCCCGAAACTCATAGGTGGCGGCAACACACCCGGTGTAGTCTACCATACAACTTTAAAGAAGAAGAAGCCCTAAACTCAGTGTGTATTCAACATGGCGAACAACAACTTCAagcataaaaaacaacaacaacttcaAGCATCGATTGACCGAGAAGGTACAGAAGTACCTTAACCAGTACAATTATAGCCTTGCATTATATAAAGAACAGCATGTAAATGTAAATTAATGGAGGGTGATTGCGGAAACGCTGGGGTCCGATCCAACCACTTGTTTGGAAAAAGTGGGGTATGGTTCGCAACAAGTTTGTCAAGGCAAAGAAAAGAAACAAGGGCCACAGTGGAAATGCTTGTGGAAAAGCTACTACAGAAATGTTGCTGCTGGCTTGTTCAGCACGGGAAGACTGAAAGCAACATCATGTCTTCACCAAAGGATGAGAGGCACAAACACCAGTGAATGGAGACATCACCTGGTTTTGTTCTCTGCGCCCCAGCACTGCCTGTTCACCGGCCCCAAACACTACCTCTCCAGACACTCTTAATTCCCTCTCCGCAGGGCCCTGGCACCTACAGCTGACTTCATGGATGAACTCTTGCCAAAACTCTGGGAGAAACTTGATCACCAGCTGTAAGACAAGAGGAGGATGTAGTCTGAACTACTGGGACTACAGTGAAATTAAGTTTGGTTGTTGTTCAGACATCTCAGAAGTCAGACACATTTGTTTCCATAGACACTTGTTTACATGTCTGTTCTCAGCAGACACTTTTGTACTGTGGCTTACTTTCAGAGCCCAGAAGCAAGAATAAAGGTTGATTTATGTGTGCTGAAAAAGCTCTCTTGGCATTTCTTAATCTCAATACAAGGTGTTTCAGTGCATTCTTTGAACATCAAGTGCTGACAAT
>TU1214682
GAAGAAGCCCTAAACTCAGTGTGTATTCAACATGGCGAACAACAACTTCAagcataaaaaacaacaacaacttcaAGCATCGATTGACCGAGAAGGTACAGAAGTACCTTAACCAGTACAATTATAGCCTTGCATTATATAAAGAACAGCATGTAAATGTAAATTAATGGAGGGTGATTGCGGAAACGCTGGGGTCCGATCCAACCACTTGTTTGGAAAAAGTGGGGTATGGTTCGCAACAAGTTTGTCAAGGCAAAGAAAAGAAACAAGGGCCACAGTGGAAATGCTTGTGGAAAAGCTACTACAGAAATGTTGCTGCTGGCTTGTTCAGCACGGGAAGACTGAAAGCAACATCATGTCTTCACCAAAGGATGAGAGGCACAAACACCAGTGAATGGAGACATCACCTGGTTTTGTTCTCTGCGCCCCAGCACTGCCTGTTCACCGGCCCCAAACACTACCTCTCCAGACACTCTTAATTCCCTCTCCGCAGGGCCCTGGCACCTACAGCTGACTTCATGGATGAACTCTTGCCAAAACTCTGGGAGAAACTTGATCACCAGCTGTAAGACAAGAGGAGGATGTAGTCTGAACTACTGGGACTACAGTGAAATTAAGTTTGGTTGTTGTTCAGACATCTCAGAAGTCAGACACATTTGTTTCCATAGACACTTGTTTACATGTCTGTTCTCAGCAGACACTTTTGTACTGTGGCTTACTTTCAGAGCCCAGAAGCAAGAATAAAGGTTGATTTATGTGTGCTGAAAAAGCTCTCTTGGCATTTCTTAATCTCAATACAAGGTGTTTCAGTGCATTCTTTGAACATCAAGTGCTGACAAT
>TU1214674
TTTTGACTGCTGTTCGTGCACACTACATTTTGTTCTGGAGGCCAGCCGAAGTTCGGGAGCCGAAGTATATGCCCCTTCGTCCTTGATTGGTCAACTGTAAGGGTGACGTAAGTTTATTCTTCTTCAGCCCGAAACTCATAGGTGGCGGCAACACACCCGGTGTAGTCTACCATACAACTTTAAAGAAGAAGAAGCCCTAAACTCAGTGTGTATTCAACATGGCGAACAACAACTTCAagcataaaaaacaacaacaacttcaAGCATCGATTGACCGAGAAGGTACAGAAGTACCTTAACCAGTACAATTATAGCCTTGCATTATATAAAGAACAGCATGTAAATGTAAATTAATGGAGGGTGATTGCGGAAACGCTGGGGTCCGATCCAACCACTTGTTTGGAAAAAGTGGGGTATGGTTCGCAACAAGTTTGTCAAGGCAAAGAAAAGAAACAAGGGCCACAGTGGAAATGCTTGTGGAAAAGCTACTACAGAAATGTTGCTGCTGGCTTGTTCAGCACGGGAAGACTGAAAGCAACATCATGTCTTCACCAAAGGATGAGAGGCACAAACACCAGTGAATGGAGACATCACCTGGTTTTGTTCTCTGCGCCCCAGCACTGCCTGTTCACCGGCCCCAAACACTACCTCTCCAGACACTCTTAATTCCCTCTCCGCAGGGCCCTGGCACCTACAGCTGACTTCATGGATGAACTCTTGCCAAAACTCTGGGAGAAACTTGATCACCAGCTGTAAGACAAGAGGAGGATGTAGTCTGAACTACTGGGACTACAGTGAAATTAAGTTTGGTTGTTGTTCAGACATCTCAGAAGTCAGACACATTTGTTTCCATAGACACTTGTTTACATGTCTGTTCTCAGCAGACACTTTTGTACTGTGGCTTACTTTCAGAGCCCAGAAGCAAGAATAAAGGTTGATTTATGTGTGC
>TU1214675
GAAGAAGCCCTAAACTCAGTGTGTATTCAACATGGCGAACAACAACTTCAagcataaaaaacaacaacaacttcaAGCATCGATTGACCGAGAAGGTACAGAAGTACCTTAACCAGTACAATTATAGCCTTGCATTATATAAAGAACAGCATGTAAATGTAAATTAATGGAGGGTGATTGCGGAAACGCTGGGGTCCGATCCAACCACTTGTTTGGAAAAAGTGGGGTATGGTTCGCAACAAGTTTGTCAAGGCAAAGAAAAGAAACAAGGGCCACAGTGGAAATGCTTGTGGAAAAGCTACTACAGAAATGTTGCTGCTGGCTTGTTCAGCACGGGAAGACTGAAAGCAACATCATGTCTTCACCAAAGGATGAGAGGCACAAACACCAGTGAATGGAGACATCACCTGGTTTTGTTCTCTGCGCCCCAGCACTGCCTGTTCACCGGCCCCAAACACTACCTCTCCAGACACTCTTAATTCCCTCTCCGCAGGGCCCTGGCACCTACAGCTGACTTCATGGATGAACTCTTGCCAAAACTCTGGGAGAAACTTGATCACCAGCTGTAAGACAAGAGGAGGATGTAGTCTGAACTACTGGGACTACAGTGAAATTAAGTTTGGTTGTTGTTCAGACATCTCAGAAGTCAGACACATTTGTTTCCATAGACACTTGTTTACATGTCTGTTCTCAGCAGACACTTTTGTACTGTGGCTTACTTTCAGAGCCCAGAAGCAAGAATAAAGGTTGATTTATGTGTGC
>TU1214678
ccgtcgagacctggcaAGTCCAGTAgagggagccatcgcctcgtgatgtataCTCGGTCTGTCACCAGGGCTCGACCAGTCTCCCCCTGATGGCTGACCTGCTATAGGCCACAATTATGACGACATTTTGTGAAATTTGTGTTCGGCGAGGGTTTTGACTGCTGTTCGTGCACACTACATTTTGTTCTGGAGGCCAGCCGAAGTTCGGGAGCCGAAGTATATGCCCCTTCGTCCTTGATTGGTCAACTGTAAGGGTGACGTAAGTTTATTCTTCTTCAGCCCGAAACTCATAGGTGGCGGCAACACACCCGGTGTAGTCTACCATACAACTTTAAAGAAGAAGAAGCCCTAAACTCAGTGTGTATTCAACATGGCGAACAACAACTTCAagcataaaaaacaacaacaacttcaAGCATCGATTGACCGAGAAGGTACAGAAGTACCTTAACCAGTACAATTATAGCCTTGCATTATATAAAGAACAGCATGTAAATGTAAATTAATGGAGGGTGATTGCGGAAACGCTGGGGTCCGATCCAACCACTTGTTTGGAAAAAGTGGGGTATGGTTCGCAACAAGTTTGTCAAGGCAAAGAAAAGAAACAAGGGCCACAGTGGAAATGCTTGTGGAAAAGCTACTACAGAAATGTTGCTGCTGGCTTGTTCAGCACGGGAAGACTGAAAGCAACATCATGTCTTCACCAAAGGATGAGAGGCACAAACACCAGTGAATGGAGACATCACCTGGTTTTGTTCTCTGCGCCCCAGCACTGCCTGTTCACCGGCCCCAAACACTACCTCTCCAGACACTCTTAATTCCCTCTCCGCAGGGCCCTGGCACCTACAGCTGACTTCATGGATGAACTCTTGCCAAAACTCTGGGAGAAACTTGATCACCAGCTGTAAGACAAGAGGAGGATGTAGTCTGAACTACTGGGACTACAGTGAAATTAAGTTTGGTTGTTGTTCAGACATCTCAGAAGTCAGACACATTTGTTTCCATAGACACTTGTTTACATGTCTGTTCTCAGCAGACACTTTTGTACTGTGGCTTACTTTCAGAGCCCAGAAGCAAGAATAAAGGTTGATTTATGTGTGC
>TU1214676
GAAGAAGCCCTAAACTCAGTGTGTATTCAACATGGCGAACAACAACTTCAagcataaaaaacaacaacaacttcaAGCATCGATTGACCGAGAAGGTACAGAAGTACCTTAACCAGTACAATTATAGCCTTGCATTATATAAAGAACAGCATGTAAATGTAAATTAATGGAGGGTGATTGCGGAAACGCTGGGGTCCGATCCAACCACTTGTTTGGAAAAAGTGGGGTATGGTTCGCAACAAGTTTGTCAAGGCAAAGAAAAGAAACAAGGGCCACAGTGGAAATGCTTGTGGAAAAGCTACTACAGAAATGTTGCTGCTGGCTTGTTCAGCACGGGAAGACTGAAAGCAACATCATGTCTTCACCAAAGGATGAGAGGCACAAACACCAGTGAATGGAGACATCACCTGGTTTTGTTCTCTGCGCCCCAGCACTGCCTGTTCACCGGCCCCAAACACTACCTCTCCAGACACTCTTAATTCCCTCTCCGCAGGGCCCTGGCACCTACAGCTGACTTCATGGATGAACTCTTGCCAAAACTCTGGGAGAAACTTGATCACCAGCTGTAAGACAAGAGGAGGATGTAGTCTGAACTACTGGGACTACAGTGAAATTAAGTTTGGTTGTTGTTCAGACATCTCAGAAGTCAGACACATTTGTTTCCAT
>TU1214680
TTTTGACTGCTGTTCGTGCACACTACATTTTGTTCTGGAGGCCAGCCGAAGTTCGGGAGCCGAAGTATATGCCCCTTCGTCCTTGATTGGTCAACTGTAAGGGTGACGTAAGTTTATTCTTCTTCAGCCCGAAACTCATAGGTGGCGGCAACACACCCGGTGTAGTCTACCATACAACTTTAAAGAAGAAGAAGCCCTAAACTCAGTGTGTATTCAACATGGCGAACAACAACTTCAagcataaaaaacaacaacaacttcaAGCATCGATTGACCGAGAAGGTACAGAAGTACCTTAACCAGTACAATTATAGCCTTGCATTATATAAAGAACAGCATGTAAATGTAAATTAATGGAGGGTGATTGCGGAAACGCTGGGGTCCGATCCAACCACTTGTTTGGAAAAAGTGGGGTATGGTTCGCAACAAGTTTGTCAAGGCAAAGAAAAGAAACAAGGGCCACAGTGGAAATGCTTGTGGAAAAGCTACTACAGAAATGTTGCTGCTGGCTTGTTCAGCACGGGAAGACTGAAAGCAACATCATGTCTTCACCAAAGGATGAGAGGCACAAACACCAGTGAATGGAGACATCACCTGGTTTTGTTCTCTGCGCCCCAGCACTGCCTGTTCACCGGCCCCAAACACTACCTCTCCAGACACTCTTAATTCCCTCTCCGCAGGGCCCTGGCACCTACAGCTGACTTCATGGATGAACTCTTGCCAAAACTCTGGGAGAAACTTGATCACCAGCTGTAAGACAAGAGGAGGATGTAGTCTGAACTACTGGGACTACAGTGAAATTAAGTTTGGTTGTTGTTCAGACATCTCAGAAGTCAGACACATTTGTTTCCAT

Function

NR:

description
PREDICTED: uncharacterized protein LOC105013099

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475644.2 False 1045 mRNA 0.45 2 36707519 36708969
TU1214677 False 1027 lncRNA 0.44 2 36707448 36708880
TU1214682 False 840 lncRNA 0.44 2 36707448 36708693
TU1214674 False 949 lncRNA 0.45 2 36707526 36708880
TU1214675 False 762 lncRNA 0.44 2 36707526 36708693
TU1214678 False 1101 lncRNA 0.46 2 36707526 36709032
TU1214676 False 666 lncRNA 0.45 2 36707622 36708693
TU1214680 True 853 lncRNA 0.45 2 36707622 36708880

Neighbor

gene id symbol gene type direction distance location
LOC110537524 LOC106568011 coding downstream 6945 36670504 ~ 36700574 (-)
LOC110537523 LOC106568009 coding downstream 52870 36645069 ~ 36654649 (-)
LOC110537522 LOC106568008 coding downstream 66386 36629759 ~ 36641133 (-)
LOC110537521 LOC106568007 coding downstream 86904 36513193 ~ 36620615 (-)
LOC110539141 NA coding downstream 293955 36412165 ~ 36413564 (-)
fgfr4 LOC106568015 coding upstream 61279 36770248 ~ 36789915 (-)
rab24 LOC106568018 coding upstream 205842 36914811 ~ 36921183 (-)
trnal-caa-105 NA coding upstream 227251 36936220 ~ 36936330 (-)
LOC110537534 LOC106568022 coding upstream 311018 37019987 ~ 37039930 (-)
LOC100136717 LOC106568026 coding upstream 422816 37131785 ~ 37138071 (-)
G1066291 NA non-coding downstream 47443 36396126 ~ 36660076 (-)
G1066335 NA non-coding downstream 234142 36467498 ~ 36473377 (-)
G1066338 NA non-coding downstream 257709 36448196 ~ 36449810 (-)
G1066331 LOC106568006 non-coding downstream 263038 36414086 ~ 36444481 (-)
G1066587 NA non-coding upstream 144670 36853639 ~ 36853868 (-)
G1066588 NA non-coding upstream 145481 36854450 ~ 36854703 (-)
G1066593 NA non-coding upstream 151314 36860283 ~ 36860562 (-)
G1067400 NA non-coding upstream 173356 36882325 ~ 36882600 (-)
G1067417 NA non-coding upstream 197735 36906704 ~ 36907137 (-)
G1066163 NA other downstream 608045 36099030 ~ 36099474 (-)
G1066054 NA other downstream 767948 35939243 ~ 35939571 (-)
G1065969 NA other downstream 897125 35792355 ~ 35810394 (-)
G1064912 mrpl22 other downstream 1223015 35476837 ~ 35484504 (-)
LOC110537509 galnt10 other downstream 1446985 35122172 ~ 35260534 (-)
G1067390 LOC106568016 other upstream 200462 36909431 ~ 36912757 (-)
G1067426 NA other upstream 228350 36937319 ~ 36937979 (-)
LOC110537540 LOC106567738 other upstream 796911 37505206 ~ 37507238 (-)
LOC110537546 ppm1e other upstream 894196 37603158 ~ 37667366 (-)

Expression


Co-expression Network