rab24 (LOC106568018)


Basic Information

Item Value
gene id rab24
gene name LOC106568018
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 36914811 ~ 36921183 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936704.1
ttaacctttatttcttCTGTAGAATGTCTCTCCTCTAAGTAGTTCCCCATAACAAAGCCTCTTGCAAGCTAACGAATGAGGTTGAGCCTGCCAGAAATGCATGTCGACTTTTCAGCATCCTGGTCTACCcctctcctgctcctgctcctcctctcctatctcatCCTGGTCCTGTGCAGTATGACAATGCGTGTGGATGCCAAAGTAGTTATGCTTGGGAAGGAGAGTGTAGGTAAGACCAGCCTTGTAGAGAGATATGTCCACCATCGCTTTCTCGTCGGCCCCTACCAGAACACTATTGGGGCTGCATTCGTTGCCAAACCAATCCAGGTGGGAGACAAGGTGGTTACCCTGGGAATATGGGACACGGCTGGATCAGAGCGCTACGAGGCTATGAGTAGAATCTACTACAGAGGAGCCAGGGCTGCCATTGTCTGCTATGATTTGACAGACACCAGCAGTTTCCAGCGAGCTAAATTCTGGGTGAAGGAGGTGCAAAACTGTGAAGAGCACTGCAAGATATACCTGTGTGGCACAAAGGTTGACCTGATTGAGAGTGACCGGGGCCTGCGGCAAGTAGACTACCATGACGTTCAGGACTTTGCTGATGAGATTGGGGCTCAGCATTTTGAAACATCCAGTAAAACAGGCAACAACGTGGATGAGCTGTTCCAAAAAGTTGCAGAGGACTTTAATAGCATCTCCTTCCAATTCATGACCGAAGAGACAGGTATTGACTTGGGTCAGAAGAAGGACTCTTATTTCTATTCCTGCTGCCACAATTAAACCTTTACTAGTAGACAGCAGTCACTTGCCCTAAAACCAACCTGGAAATGTTGGATGGATGCTAGACATCCCACCTGGAGCCTGTTAATTTAaaatcagagaaagaaagagaggagtccAAGCAGTACTGTGTTTTTTTGATTGCTTTTTTCAGTTGTGCCATAGAAGGCTAAATGCTCACTGCATTTAAAGGAGTGCTCATAATGATTGGACTTCCCCTCTCTCAGGACAAAATACCTGCCAAGGGGGATATCGGAATGAAGCAGACAAGGAAATAGCACTTCAACCCCACTTTTAAAAAAGCCTTGTTTTCCTTAGTGTCTATCAACTCACCTTAATGCCGCTACACACTTCATGCAAACAGAGCAACGGAGCATCGCATACGATCCATTCCCAAATTTTTGCCAAACAAATATACGTAGAACTATGTGTGACAACTACTCTGTCGCTGCGTTTATGTAGTTGGATAGAGGCCGTATAGGGCCATTTAGGGACAGTTCAAAgtttactggggggggggggggttagagtgTCCAACTCGAGGTGTCAGGAAAAAAAATGTACgaccacaaataacaataactgtgtttataaatgtggatatcgactttgccacttcagcatggttttgtggcacagtcgatgCACTACGATCAGAGCCGGCTGCAGACAATGCTCAGCTAGCTAGAAATCTAATTTCAATGCACCACACAACCCATAAGCAAAGCATACCCATTTCAGGCGCTTCAAGTTCATGGTTTGTGTTTTCAACACTACAATGAAATATACTGTCAATCTCGACAAACAGAAAATAGGCCTAGATCCTGCCCTACCTTGCAGGCCTACCCAGTATCGAAGGCTTGGCTTGGCAGTCTCCAAATGTCATTACACTTTTTGGTGTTAAACATATGTCTCTTTCCTTTCATCAAATGGCTGCTGCAcagtttggatgctggaattacATTTAGGACGAACGTGCGCAGGTAGCCTACTTTTGATTAAAACattgtgactggttgtgtttatgccacacatAAAATTCCATACATTTTAAGAAGTTAAATGACAAATATTTAGGCTACATTGAAGCGTTAGGTTCTAGGTGCGTGAGGAATAGCCACTGGGATGGATCTCTTGAGGCAGAGCACGCGTTAAGCTTTCCTGAATAATGGCCTGCTGGGAGCATATGTGGCCACATTTCTATTAAAGAATgacttgggagaatgatgatccGCAACAGACAATGCATATCAGTATCAGAACTTAAAATATAGCCAAACTGGCCTGCTACTCTGCCTTTCTATACCTTATTAACAGGCGAGTAGACCCACAAGTGATCCAAATGGAATGAAACATTCAAATCACAGGGCTTTTGCACCAttatttaaataacattttcactGCAGTTTATAGCCTAGAGTTGAATTTTGTacttgaaaacaataatgcaatATCTCATTGCATTGCGGTGTTATAGGCTAGTCTATGTAGGATAATTGAAACATAATTGTCCCAGAACCAGATGACTAGGGGAGCTTTTTGAGTTGCGTGTCTCATTTCTTCACAGTTCTTTCATGCGCAATGACCCACCTGGCCTCTTTGCTGATAGTGAAAATTGGTGCAACTTTGAATGATTTTATCTGTGGTATGATGCTAGTTAGCCTATTGTAGATCTGGGCAAATGATCCACCTCGCgctattgtcactatgaatggtggatagaaGGCAGTATAGACTGGTatactatactgacctgtggtatagtaaaAGGTAGCTCACGGAAAAGCATAGTGCATAAGAGAAGTACCAAAGCAACTTGATATAAGGGAGGCGCATGCAAGCGGATGAGGACATTTGTCTAGGATGGAAGAAATTATATAGTAAAACCTGCTAAGGGACGAATGTAAACCAGGGAAacaacacactaccctcccctgtgcccaataaaaacaaCCCTCCCaaaagcaaaaataaagaaagaaaaaacgTTAGACAACACCCATATTTTGGACCACCCCACCCCAGTAAATCTCAAACTTTCCCTTATATAAATGAATTATGCCAATGACATGTATAGCTTTTATCCCATAATCAAATGCCTTGAGTGAGTGTGCTTTTTAAGTACTTGATTTCAATGACCATTCTGTGGGTTTTGGGGCTTTAAACTATAGACTATTTTCATTGTCTACTCTAGGTTGCAATGGACTTGCCATACTATGTACCTGCACATTTATTGTCATGTAACATATATTTTTCTGTTGTCATAAGCTCTCATACAGTTCAACGTATATGGAATGCACCAACACAGGAAAAAGTTTATGGGTAAATGTTGTAATAAGAGAGTTACGTCGCCATGGCTAAAAGTACTATATAATGCCATTGCAAAAAGAAACCCTATATACAGACAGCTATGTGTAGCTAATGTATTTAATATCCAGCAAGTCACTAACTTAATGTTTTACAGACACCTCATCAAACCGTGGCTGACCATTGTCGTTACTTCACACACAATGGGAAGTTGAAACtttctgtgaatgtattgttaaTGTTTACACTTTGAGACACCTTTGACCTTTTGAGACAGTCTAGCCAATGGCTGATTTTTACTAGATTTTACCAATGTGTGTTCAAATTAGCTTAGTTAGAACTACTATTGAATTTGAGTGCAAAGATAAACGAGAGGAAATACTGAAACCTCACTGAGGGTTTTTCTCAGTCCCACTGAAGTTGTGCATGTAGGAGACTAGTAGTAAGCAGCAGCAATGGTTTTCCCTTGAGTAATGAATCACATATCCATCATTAGCGGTGTATAGCAGGCTCCATTATTGTTTACACACGCAGCATCTTCTATGTTGTCACTCCCCAAGGGCGCAGACCTGCCTGAGAAAGAGGGATAGTTCACATATTTCATTTTCTGAATGGTTTACTAGAAGGTGCAATGTGTACAAGCATGAAGCCAGATGTTGTTTGCAGTCCCACATCTGTCTGAGGCCTTGTAGATAACATGCATATATTTCCAACACTACAGGTCCACAGAGTCTGCTGATATGATCATTCATTGTGTGGACTCCAGTGACTGTGTTTTTTAGCATGTTGTAAATTGGAAAAATAAAGATTCCATTTCTGCAA
>XM_036936706.1
tttatttatttaacctttatttcttCTGTAGAATGTCTCTCCTCTAAGTAGTTCCCCATAACAAAGCCTCTTGCAAGCTAACGAATGAGGTTGAGCCTGCCAGAAATGCATGTCGAGTAAGATTTGCCATACGGCATAGCAATGTCATAGACAATATACAGTACGTGTTAGGGATCTTTCTGTTGCTTGTAATTTTAGTTTGTAGTACAATTGACGTTGCGTAAGCTGACAACAACAAGAGCAACCTCGAGTGGCTCAAACactggctagccagctagttagATAGCTAACTTTAACTGTAACGAAATGTTCACATAAGAGCTAGCTATTACATTTAGTTTAGTATAATCCGACTCGGTTCTCATTCTTCAATTTGAACACATTTAGCTGAGTTTGCCAAGCAGCTTTTCAGCATCCTGGTCTACCcctctcctgctcctgctcctcctctcctatctcatCCTGGTCCTGTGCAGTATGACAATGCGTGTGGATGCCAAAGTAGTTATGCTTGGGAAGGAGAGTGTAGGTAAGACCAGCCTTGTAGAGAGATATGTCCACCATCGCTTTCTCGTCGGCCCCTACCAGAACACTATTGGGGCTGCATTCGTTGCCAAACCAATCCAGGTGGGAGACAAGGTGGTTACCCTGGGAATATGGGACACGGCTGGATCAGAGCGCTACGAGGCTATGAGTAGAATCTACTACAGAGGAGCCAGGGCTGCCATTGTCTGCTATGATTTGACAGACACCAGCAGTTTCCAGCGAGCTAAATTCTGGGTGAAGGAGGTGCAAAACTGTGAAGAGCACTGCAAGATATACCTGTGTGGCACAAAGGTTGACCTGATTGAGAGTGACCGGGGCCTGCGGCAAGTAGACTACCATGACGTTCAGGACTTTGCTGATGAGATTGGGGCTCAGCATTTTGAAACATCCAGTAAAACAGGCAACAACGTGGATGAGCTGTTCCAAAAAGTTGCAGAGGACTTTAATAGCATCTCCTTCCAATTCATGACCGAAGAGACAGGTATTGACTTGGGTCAGAAGAAGGACTCTTATTTCTATTCCTGCTGCCACAATTAAACCTTTACTAGTAGACAGCAGTCACTTGCCCTAAAACCAACCTGGAAATGTTGGATGGATGCTAGACATCCCACCTGGAGCCTGTTAATTTAaaatcagagaaagaaagagaggagtccAAGCAGTACTGTGTTTTTTTGATTGCTTTTTTCAGTTGTGCCATAGAAGGCTAAATGCTCACTGCATTTAAAGGAGTGCTCATAATGATTGGACTTCCCCTCTCTCAGGACAAAATACCTGCCAAGGGGGATATCGGAATGAAGCAGACAAGGAAATAGCACTTCAACCCCACTTTTAAAAAAGCCTTGTTTTCCTTAGTGTCTATCAACTCACCTTAATGCCGCTACACACTTCATGCAAACAGAGCAACGGAGCATCGCATACGATCCATTCCCAAATTTTTGCCAAACAAATATACGTAGAACTATGTGTGACAACTACTCTGTCGCTGCGTTTATGTAGTTGGATAGAGGCCGTATAGGGCCATTTAGGGACAGTTCAAAgtttactggggggggggggggttagagtgTCCAACTCGAGGTGTCAGGAAAAAAAATGTACgaccacaaataacaataactgtgtttataaatgtggatatcgactttgccacttcagcatggttttgtggcacagtcgatgCACTACGATCAGAGCCGGCTGCAGACAATGCTCAGCTAGCTAGAAATCTAATTTCAATGCACCACACAACCCATAAGCAAAGCATACCCATTTCAGGCGCTTCAAGTTCATGGTTTGTGTTTTCAACACTACAATGAAATATACTGTCAATCTCGACAAACAGAAAATAGGCCTAGATCCTGCCCTACCTTGCAGGCCTACCCAGTATCGAAGGCTTGGCTTGGCAGTCTCCAAATGTCATTACACTTTTTGGTGTTAAACATATGTCTCTTTCCTTTCATCAAATGGCTGCTGCAcagtttggatgctggaattacATTTAGGACGAACGTGCGCAGGTAGCCTACTTTTGATTAAAACattgtgactggttgtgtttatgccacacatAAAATTCCATACATTTTAAGAAGTTAAATGACAAATATTTAGGCTACATTGAAGCGTTAGGTTCTAGGTGCGTGAGGAATAGCCACTGGGATGGATCTCTTGAGGCAGAGCACGCGTTAAGCTTTCCTGAATAATGGCCTGCTGGGAGCATATGTGGCCACATTTCTATTAAAGAATgacttgggagaatgatgatccGCAACAGACAATGCATATCAGTATCAGAACTTAAAATATAGCCAAACTGGCCTGCTACTCTGCCTTTCTATACCTTATTAACAGGCGAGTAGACCCACAAGTGATCCAAATGGAATGAAACATTCAAATCACAGGGCTTTTGCACCAttatttaaataacattttcactGCAGTTTATAGCCTAGAGTTGAATTTTGTacttgaaaacaataatgcaatATCTCATTGCATTGCGGTGTTATAGGCTAGTCTATGTAGGATAATTGAAACATAATTGTCCCAGAACCAGATGACTAGGGGAGCTTTTTGAGTTGCGTGTCTCATTTCTTCACAGTTCTTTCATGCGCAATGACCCACCTGGCCTCTTTGCTGATAGTGAAAATTGGTGCAACTTTGAATGATTTTATCTGTGGTATGATGCTAGTTAGCCTATTGTAGATCTGGGCAAATGATCCACCTCGCgctattgtcactatgaatggtggatagaaGGCAGTATAGACTGGTatactatactgacctgtggtatagtaaaAGGTAGCTCACGGAAAAGCATAGTGCATAAGAGAAGTACCAAAGCAACTTGATATAAGGGAGGCGCATGCAAGCGGATGAGGACATTTGTCTAGGATGGAAGAAATTATATAGTAAAACCTGCTAAGGGACGAATGTAAACCAGGGAAacaacacactaccctcccctgtgcccaataaaaacaaCCCTCCCaaaagcaaaaataaagaaagaaaaaacgTTAGACAACACCCATATTTTGGACCACCCCACCCCAGTAAATCTCAAACTTTCCCTTATATAAATGAATTATGCCAATGACATGTATAGCTTTTATCCCATAATCAAATGCCTTGAGTGAGTGTGCTTTTTAAGTACTTGATTTCAATGACCATTCTGTGGGTTTTGGGGCTTTAAACTATAGACTATTTTCATTGTCTACTCTAGGTTGCAATGGACTTGCCATACTATGTACCTGCACATTTATTGTCATGTAACATATATTTTTCTGTTGTCATAAGCTCTCATACAGTTCAACGTATATGGAATGCACCAACACAGGAAAAAGTTTATGGGTAAATGTTGTAATAAGAGAGTTACGTCGCCATGGCTAAAAGTACTATATAATGCCATTGCAAAAAGAAACCCTATATACAGACAGCTATGTGTAGCTAATGTATTTAATATCCAGCAAGTCACTAACTTAATGTTTTACAGACACCTCATCAAACCGTGGCTGACCATTGTCGTTACTTCACACACAATGGGAAGTTGAAACtttctgtgaatgtattgttaaTGTTTACACTTTGAGACACCTTTGACCTTTTGAGACAGTCTAGCCAATGGCTGATTTTTACTAGATTTTACCAATGTGTGTTCAAATTAGCTTAGTTAGAACTACTATTGAATTTGAGTGCAAAGATAAACGAGAGGAAATACTGAAACCTCACTGAGGGTTTTTCTCAGTCCCACTGAAGTTGTGCATGTAGGAGACTAGTAGTAAGCAGCAGCAATGGTTTTCCCTTGAGTAATGAATCACATATCCATCATTAGCGGTGTATAGCAGGCTCCATTATTGTTTACACACGCAGCATCTTCTATGTTGTCACTCCCCAAGGGCGCAGACCTGCCTGAGAAAGAGGGATAGTTCACATATTTCATTTTCTGAATGGTTTACTAGAAGGTGCAATGTGTACAAGCATGAAGCCAGATGTTGTTTGCAGTCCCACATCTGTCTGAGGCCTTGTAGATAACATGCATATATTTCCAACACTACAGGTCCACAGAGTCTGCTGATATGATCATTCATTGTGTGGACTCCAGTGACTGTGTTTTTTAGCATGTTGTAAATTGGAAAAATAAAGATTCCATTTCTGCAA
>NM_001124373.2
CTTTTCAGCATCCTGGTCTACCcctctcctgctcctgctcctcctctcctatctcatCCTGGTCCTGTGCAGTATGACAATGCGTGTGGATGCCAAAGTAGTTATGCTTGGGAAGGAGAGTGTAGGTAAGACCAGCCTTGTAGAGAGATATGTCCACCATCGCTTTCTCGTCGGCCCCTACCAGAACACTATTGGGGCTGCATTCGTTGCCAAACCAATCCAGGTGGGAGACAAGGTGGTTACCCTGGGAATATGGGACACGGCTGGATCAGAGCGCTACGAGGCTATGAGTAGAATCTACTACAGAGGAGCCAGGGCTGCCATTGTCTGCTATGATTTGACAGACACCAGCAGTTTCCAGCGAGCTAAATTCTGGGTGAAGGAGGTGCAAAACTGTGAAGAGCACTGCAAGATATACCTGTGTGGCACAAAGGTTGACCTGATTGAGAGTGACCGGGGCCTGCGGCAAGTAGACTACCATGACGTTCAGGACTTTGCTGATGAGATTGGGGCTCAGCATTTTGAAACATCCAGTAAAACAGGCAACAACGTGGATGAGCTGTTCCAAAAAGTTGCAGAGGACTTTAATAGCATCTCCTTCCAATTCATGACCGAAGAGACAGGTATTGACTTGGGTCAGAAGAAGGACTCTTATTTCTATTCCTGCTGCCACAATTAAACCTTTACTAGTAGACAGCAGTCACTTGCCCTAAAACCAACCTGGAAATGTTGGATGGATGCTAGACATCCCACCTGGAGCCTGTTAATTTAaaatcagagaaagaaagagagga

Function

NR:

description
ras-related protein Rab-24-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07912 RAB24; Ras-related protein Rab-24

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936704.1 False 3915 mRNA 0.42 9 36914811 36921174
XM_036936706.1 False 4212 mRNA 0.42 9 36914811 36921183
NM_001124373.2 True 794 mRNA 0.48 8 36917825 36920035

Neighbor

gene id symbol gene type direction distance location
fgfr4 LOC106568015 coding downstream 124896 36770248 ~ 36789915 (-)
LOC110537525 NA coding downstream 205842 36707448 ~ 36709032 (-)
LOC110537524 LOC106568011 coding downstream 214237 36670504 ~ 36700574 (-)
LOC110537523 LOC106568009 coding downstream 260162 36645069 ~ 36654649 (-)
LOC110537522 LOC106568008 coding downstream 273678 36629759 ~ 36641133 (-)
trnal-caa-105 NA coding upstream 15037 36936220 ~ 36936330 (-)
LOC110537534 LOC106568022 coding upstream 98804 37019987 ~ 37039930 (-)
LOC100136717 LOC106568026 coding upstream 210602 37131785 ~ 37138071 (-)
LOC110537538 NA coding upstream 524703 37445886 ~ 37448950 (-)
LOC110537540 LOC106567738 coding upstream 584023 37505206 ~ 37507238 (-)
G1067418 NA non-coding downstream 6018 36908462 ~ 36908793 (-)
G1067417 NA non-coding downstream 7674 36906704 ~ 36907137 (-)
G1067400 NA non-coding downstream 32211 36882325 ~ 36882600 (-)
G1066593 NA non-coding downstream 54249 36860283 ~ 36860562 (-)
G1066588 NA non-coding downstream 60108 36854450 ~ 36854703 (-)
G1067388 pgmrc1 non-coding upstream 1184 36922367 ~ 36925320 (-)
G1067426 NA non-coding upstream 16136 36937319 ~ 36937979 (-)
G1067429 NA non-coding upstream 18547 36939730 ~ 36940724 (-)
G1067430 NA non-coding upstream 21509 36942692 ~ 36943176 (-)
G1067432 NA non-coding upstream 28340 36949523 ~ 36950357 (-)
G1067390 LOC106568016 other downstream 2054 36909431 ~ 36912757 (-)
G1066163 NA other downstream 815337 36099030 ~ 36099474 (-)
G1066054 NA other downstream 975240 35939243 ~ 35939571 (-)
G1065969 NA other downstream 1104417 35792355 ~ 35810394 (-)
G1064912 mrpl22 other downstream 1430307 35476837 ~ 35484504 (-)
LOC110537546 ppm1e other upstream 681982 37603158 ~ 37667366 (-)
LOC110539142 NA other upstream 750999 37672182 ~ 37706371 (-)

Expression


Co-expression Network