LOC110537540 (LOC106567738)


Basic Information

Item Value
gene id LOC110537540
gene name LOC106567738
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 37505206 ~ 37507238 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034960.1
TTCGCTGCCAGCCGTGGGCCTATTGCCTACTTTCGGTTTCACATTCACCAGGTTTTTGCGCAAGTACATGTGAGGAAAATCAGGAAGTATGTACGTCAAGCCTACTACTAGGGTGCGGTTCCGGTGGttagaaaagtgtttattttctcAACTATACATGTTAAAGTTAGGACAAGCTGATCGTAGATCTGCAATAAACCCACGGTTTGCAACGAACAATAAGGTTGGAACTACAAATATTTTAGCAGGATAAACCAGTGTGAAGATCATCAAGAAAGTTACATCATACTTTTGTTCTACCCTTGGCAGCGATGGCAGCTCAGCAGCTGCATGGATTGAGGACCAAATTCATTGAGAAGGTGTCAAAGGCCGTTCTAGATCAACTGATGGATGACCTCTTAGAAGACATGGTGCTGAACGATGGAGAAATCGAGGAGATAAAGGAGAACAACATGCTGAGGGCGGATAAGGCTCGCCAACTTATTGATAGTGTGCGCAGGAAAGGCAACACAGCCAGTGAGAAGTTTCTCATACGACTCCAGGAAAGAGACAAAAATGTCTACAGTGAGCTTAACCCCCAGGTGTAGCCAATATGGATGAGAGAAAAAGTGTCTGACTCTTGACCCTCTCTTGAAAGACCTGGAGGTGCCACCCAGAGAGCCTCTTACATTCCTTTTGACCAAGGCCTCATAATTAAATGTCTTAATGTACggtattttttaaacaaatgaaATATCTATATTTTTCACAAGAATGTTTAATAtagaataaatatatatacaaactaaatatatatatttttacaatgtTTTTCTACTGAATTTTTTAAATCTAATAAATACTTTATTTcctgttaatttttttttttatcattcttGCCTTTTATCCTAGCATCAAATATTAGATGAATCGGCTAGGTGAGCCCCAAACATAACTGATTACAGCGAATGCCACACTAACAAAGCACTTCCCTTACATGCTTCTTGCAGTGGAAAAACAAAATACATACCTTATACCTCAGATTCTCCTGGCTAGTGGATTTGATTAGATAGCATCATCAGTGTGTGCAGTGAAGTGGGTTGAGGCTGATCCCCTCAAAGATCTGCTGGGTACAGTATAGCGACTCTGTACCGGCTGATTTCCCACCAAGGCCTTCTGTGTTTTTGTTGACCTAATTATTCAGTGCAGACAACATCCCTCTAGAGGAAATGTTCCCCTGTGTTCCTAGCCAGATGGAATGTCCTGTAATCTCTTTAAAAACAGTAAGCGTATCAAACAATGAATTAACAAACTAGTAAATAGCAAAAAATATGATACCATAGGTGATCAAATATGTGTGTATTTTCACTTAGCATTGCACAGTAACTGCAGATCTAACATTGAATTGATCTGACAGTGCTCTATTCCAATGAATAGTTATTTCCCAACAGTTCAATAAAAATGAGTTGCTGCACACTGC
>TU1216092
GTCAAGCCTACTACTAGGGTGCGGTTCCGGTGGttagaaaagtgtttattttctcAACTATACATGTTAAAGTTAGGACAAGCTGATCGTAGATCTGCAATAAACCCACGGTTTGCAACGAACAATAAGGTTGGAACTACAAATATTTTAGCAGGATAAACCAGTGTGAAGATCATCAAGAAAGTTACATCATACTTTTGTTCTACCCTTGGCAGCGATGGCAGCTCAGCAGCTGCATGGATTGAGGACCAAATTCATTGAGAAGGTGTCAAAGGCCGTTCTAGATCAACTGATGGATGACCTCTTAGAAGACATGGTGCTGAACGATGGAGAAATCGAGGAGATAAAGGAGAACAACATGCTGAGGGCGGATAAGGCTCGCCAACTTATTGATAGTGTGCGCAGGAAAGGCAACACAGCCAGTGAGAAGTTTCTCATACGACTCCAGGAAAGAGACAAAAATGTCTACAGTGAGCTTAACCCCCAGGTGTAGCCAATATGGATGAGAGAAAAAGTGTCTGACTCTTGACCCTCTCTTGAAAGACCTGGAGGTGCCACCCAGAGAGCCTCTTACATTCCTTTTGACCAAGGCCTCATAATTAAATGTCTTAATGTACggtattttttaaacaaatgaaATATCTATATTTTTCACAAGAATGTTTAATAtagaataaatatatatacaaac

Function

NR:

description
caspase-1-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034960.1 False 1459 mRNA 0.39 3 37505206 37507238
TU1216092 True 691 TUCP 0.41 3 37505880 37507144

Neighbor

gene id symbol gene type direction distance location
LOC110537538 NA coding downstream 56256 37445886 ~ 37448950 (-)
LOC100136717 LOC106568026 coding downstream 367135 37131785 ~ 37138071 (-)
LOC110537534 LOC106568022 coding downstream 465276 37019987 ~ 37039930 (-)
trnal-caa-105 NA coding downstream 568876 36936220 ~ 36936330 (-)
rab24 LOC106568018 coding downstream 584023 36914811 ~ 36921183 (-)
LOC110537546 ppm1e coding upstream 95920 37603158 ~ 37667366 (-)
LOC110539142 NA coding upstream 167423 37672182 ~ 37706371 (-)
ska2 ska2 coding upstream 206189 37712908 ~ 37740454 (-)
LOC110539143 LOC106567739 coding upstream 270749 37777987 ~ 37790177 (-)
LOC110537549 LOC100380745 coding upstream 295358 37802596 ~ 37886734 (-)
G1067679 NA non-coding downstream 60891 37443813 ~ 37444315 (-)
G1067733 NA non-coding downstream 64869 37440055 ~ 37440337 (-)
G1067716 NA non-coding downstream 90898 37413952 ~ 37414308 (-)
G1067708 NA non-coding downstream 95044 37407328 ~ 37410162 (-)
G1067654 NA non-coding downstream 191914 37312982 ~ 37313292 (-)
G1067783 LOC106603469 non-coding upstream 12557 37519795 ~ 37536856 (-)
G1067792 NA non-coding upstream 50522 37557760 ~ 37558393 (-)
G1067791 NA non-coding upstream 51333 37558571 ~ 37559476 (-)
G1067821 NA non-coding upstream 79051 37586289 ~ 37589330 (-)
G1067828 NA non-coding upstream 89258 37596496 ~ 37597009 (-)
G1067426 NA other downstream 567227 36937319 ~ 36937979 (-)
G1067390 LOC106568016 other downstream 592449 36909431 ~ 36912757 (-)
G1066163 NA other downstream 1405732 36099030 ~ 36099474 (-)
G1066054 NA other downstream 1565635 35939243 ~ 35939571 (-)
LOC110537579 LOC106603438 other upstream 1534282 39041272 ~ 39072520 (-)
G1069456 LOC106567699 other upstream 1601062 39108300 ~ 39108962 (-)
fkbp6 LOC106567715 other upstream 1828866 39336054 ~ 39343006 (-)

Expression


Co-expression Network