ska2 (ska2)


Basic Information

Item Value
gene id ska2
gene name ska2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 37712908 ~ 37740454 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034968.1
TATTTTTGCTATAGTTTACCAAGCATAcggtaggtggcggcatgcacctcTATAGCTAGTTTGCAGACCGCcataataccatagaagaagACGGAACGTAAACTACTCAACATGGAGACAGCAGTTGATAAACTGGAGGCGATGTTCCAGAAGGCAGAGGCTGACATGGAGTACATGGAGAAGCGGCTACGACTGGATTTCCTGACTAATGTTCCAGAGAACAGTGCAGCAGAGGAAAACCCTGTGAAGCTGCTGGAGAACCTGTCAGCCATCAAGACGAGGCATGCGGCCCTGTGCACACAAGTGCAGGAGATCGCAGCCGAGCAGAAGCAATCAATGGACTCCATACGAGTGCACCTCGACACCACTGTGCAGCTGGTGCAACAGTTACAGCAGGCTGCTGACGTTGAGCTTCCTACACTGACTGAGACGGAGCAGGAGTCTGCAGAGTTCCTTGGTTTATCAGTCAATCAAAACACAGCAGCGGTACCGATGTCTATGGagcttcaagcccaagagctgccTCGGTCCTCGAGGGAGGGCGAGTTTGAGGAGCTGAGTGAAGCCACACTGGAGGCAGTGCCGTGCAGCATGCGTGCCAACGTCAAGCTGGCCAACCTCAATGCCTTCTACAAGCAGCTGCACGAGTACTTCTCCTTCAGAAAAAACAGTGGTGCCCTCAGTTTGCAGAAGATGAAGCAGATGAACATGAAGGTTAGCGACGCCAAGCTGAAAACGTTGCAGCACCTCTCTCTCATTGAGCTAGACAAGAAAGGGCATGTTCGTCTGCTAATGTGAGACTGAGGAACCTGCATAGCCGAGAGGCTAAAATATAAGACCCCACCGCACTATGTGATGAAAAGTGACTGATTCTGCCCATCTCTCCTTGTCCATTTGCTAGGCATATTAGCCTCATTGAAGGGTTTTCAGTTGAATCCTCATGCCTACATATGCTGTGGTTCGATTTTAATTTGCTAGATATTTTTCTTAAATGACACCCCAGAATCTTCTTTCAAAAGgtcgcaaagttctttcgcatggcactgtatgTAGTGTTTTCTGGCTTATGtatcagccaaatacatttcacctGTAAATATGTGATGAACGATTTAATGCCACTGGCTTTCCAACTGTATTGTACGTCTTGTGTCGAGTGTCAATGAATTTTATGAGCATTCATTAAATTGAAATATTCCCTCTGCCCAGGTACCCAATCAAAAATAAATTTAACAAGGCGTGCAAACATGTATTAGCATCTCAATGTACAGTTTAAAGTCTCTTTCTCCCAAGTATGTAAAACAATTACTTAAAATTTAACAGGAACTTTAAATGAATCCATAAAAGTTTAAAAATGCAGATG
>XM_021623670.2
TATTTTTGCTATAGTTTACCAAGCATAcggtaggtggcggcatgcacctcTATAGCTAGTTTGCAGACCGCcataataccatagaagaagACGGAACGTAAACTACTCAACATGGAGACAGCAGTTGATAAACTGGAGGCGATGTTCCAGAAGGCAGAGGCTGACATGGAGTACATGGAGAAGCGGCTACGACTGGATTTCCTGACTAATGTTCCAGAGAACAGTGCAGCAGAGGAAAACCCTGTGAAGCTGCTGGAGAACCTGTCAGCCATCAAGACGAGGCATGCGGCCCTGTGCACACAAGTGCAGGAGATCGCAGCCGAGCAGAAGCAATCAATGGACTCCATACGAGTGCACCTCGACACCACTGTGCAGCTGGTGCAACAGTTACAGCAGGCTGCTGACGTTGAGCTTCCTACACTGACTGAGACGGAGCAGGAGTCTGCAGAGTTCCTTGGTTTATCAGTCAATCAAAACACAGCAGCGGTACCGATGTCTATGGagcttcaagcccaagagctgccTCGGTCCTCGAGGGAGGGCGAGTTTGAGGAGCTGAGTGAAGCCACACTGGAGGCAGTGCCGTGCAGCATGCGTGCCAACGTCAAGCTGGCCAACCTCAATGCCTTCTACAAGCAGCTGCACGAGTACTTCTCCTTCAGAAAAAACAGTGGTGCCCTCAGTTTGCAGAAGATGAAGCAGATGAACATGAAGGTTAGCGACGCCAAGCTGAAAACGTTGCAGCACCTCTCTCTCATTGAGCTAGACAAGAAAGGGCATGTTCGTCTGCTAATGTGAGACTGAGGAACCTGCATAGCCGAGAGGCTAAAATATAAGACCCCACCGCACTATGTGATGAAAAGTGACTGATTCTGCCCATCTCTCCTTGTCCATTTGCTAGGCATATTAGCCTCATTGAAGGGTTTTCAGTTGAATCCTCATGCCTACATATGCTGTGGTTCGATTTTAATTTGCTAGATATTTTTCTTAAATGACACCCCAGAATCTTCTTTCAAAAGGAATTGACATCAGAAGCAAGAATTCCAGATGGGATCAAGTCATCACATGTTTCTAGGGTGTTGTAAGTAGAAGGTTGTTGGGCCATATTGTAAATTAAGGTGCACTATTTTTGTAAAGAGTTTAATGTTggataagtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtggg
>TU1216238
ctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttctttcgcatggcactgtatgTAGTGTTTTCTGGCTTATGtatcagccaaatacatttcacctGTAAATATGTGATGAACGATTTAATGCCACTGGCTTTCCAACTGTATTGTACGTCTTGTGTCGAGTGTCAATGAATTTTATGAGCATTCATTAAATTGAAATATTCCCTCTGCCCAGGTACCCAATCAAAAATAAATTTAACAAGGCGTGCAAACATGTATTAGCATCTCAATGTACAGTTTAAAGTCTCTTTCTCCCAAGTATGTAAAACAATTACTTAAAATTTAACAGGAACTTTAAATGAATCCATAAAAGTTTAAAAATGCAGATGCAAACAAACCATTACATTGGTTGATTTAAGTTTGCTTTTGTGTTGATAAAATCTGATCAATGGGTAATGCACTAGGGCAGAGTGAAATTACAATAGGTAACACATGAATATATTAACAGTAGTGATGGTAAATGAATTAAAAACAGTTATGATAAGTTATCAGAATTGCAGAACCAAAGAATACATGTATTGTCATGCCACATGTTTAAGTGCTTAAAAAATACAATAGTTTTTACCACCAAAAGGATCCATTTTCAAACAGGTGAGTGAATTGTAGTGGAGAATGTTAGAACATAATCAACAGAATGGTCGAATTGTAGTACATtccacagtgagtccatgcaacttatgtgacatTTGTAACATATTTacacttgccataacaaaggggttgaacacttattgactgaagacatttcagcttttcattttttcatttgtaaaaatgtcaaatttgacattatggagtattatgtgtagatcaatgacacatctcaatttaatccatttaaaattcag

Function

symbol description
ska2 Predicted to enable microtubule binding activity. Predicted to be involved in several processes, including chromosome segregation; mitotic cell cycle; and regulation of microtubule polymerization or depolymerization. Predicted to be located in cytoplasm; kinetochore; and microtubule. Predicted to be part of outer kinetochore. Predicted to be active in spindle microtubule. Orthologous to human SKA2 (spindle and kinetochore associated complex subunit 2).

NR:

description
PREDICTED: spindle and kinetochore-associated protein 2-like

GO:

id name namespace
GO:0007059 chromosome segregation biological_process
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process
GO:0000940 condensed chromosome outer kinetochore cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008017 microtubule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034968.1 False 1363 mRNA 0.45 8 37713427 37740454
XM_021623670.2 False 1274 mRNA 0.47 7 37714863 37740454
TU1216238 True 895 lncRNA 0.33 1 37712908 37713802

Neighbor

gene id symbol gene type direction distance location
LOC110539142 NA coding downstream 35137 37672182 ~ 37706371 (-)
LOC110537546 ppm1e coding downstream 46061 37603158 ~ 37667366 (-)
LOC110537540 LOC106567738 coding downstream 206189 37505206 ~ 37507238 (-)
LOC110537538 NA coding downstream 264477 37445886 ~ 37448950 (-)
LOC100136717 LOC106568026 coding downstream 575356 37131785 ~ 37138071 (-)
LOC110539143 LOC106567739 coding upstream 37533 37777987 ~ 37790177 (-)
LOC110537549 LOC100380745 coding upstream 62142 37802596 ~ 37886734 (-)
LOC118937921 NA coding upstream 145858 37886312 ~ 37886407 (-)
LOC110537550 LOC106567668 coding upstream 146989 37887443 ~ 37891682 (-)
LOC110537551 LOC106567669 coding upstream 159399 37899853 ~ 37922703 (-)
G1067832 NA non-coding downstream 103837 37609358 ~ 37609590 (-)
G1067828 NA non-coding downstream 116418 37596496 ~ 37597009 (-)
G1067821 NA non-coding downstream 124097 37586289 ~ 37589330 (-)
G1067791 NA non-coding downstream 153951 37558571 ~ 37559476 (-)
G1067792 NA non-coding downstream 155034 37557760 ~ 37558393 (-)
G1067872 NA non-coding upstream 18500 37758954 ~ 37760121 (-)
G1067924 NA non-coding upstream 33858 37774312 ~ 37776383 (-)
G1068021 NA non-coding upstream 207909 37948363 ~ 37948581 (-)
G1068082 NA non-coding upstream 315930 38056384 ~ 38056616 (-)
G1068091 NA non-coding upstream 332401 38072855 ~ 38073098 (-)
LOC110537534 LOC106568022 other downstream 682743 37019987 ~ 37039930 (-)
G1067426 NA other downstream 775448 36937319 ~ 36937979 (-)
LOC110537579 LOC106603438 other upstream 1301066 39041272 ~ 39072520 (-)
G1069456 LOC106567699 other upstream 1367846 39108300 ~ 39108962 (-)
fkbp6 LOC106567715 other upstream 1595650 39336054 ~ 39343006 (-)
G1071725 NA other upstream 3298412 41038866 ~ 41039931 (-)
G1073009 NA other upstream 4305409 42045863 ~ 42062632 (-)
G1067876 NA non-coding upstream 141 37713943 ~ 37714433 (-)

Expression


Co-expression Network