LOC110537550 (LOC106567668)


Basic Information

Item Value
gene id LOC110537550
gene name LOC106567668
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 37887443 ~ 37891682 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623674.2
CTGCCCTGGATCACGTGACCAGAATGCTCCGGACTAAAATAACAGAAGGAAAGATTGTAGTCAAGTCTCTCACAGCAAGTATTTTAACCACCCTCTCATTCATCGAAGTTCGCTAAGGTTTGTGGATGAATTAATAGGTCAAAGGACGTCTTGGCAAAAAAGTTGCCATGAGCAGTGAGCTGAACGTGCCCATGGGCTCCCCGGCCCCGGGGGGCTCAGAGCAGATgccagagggtggagggatggactACAGGGACTGGGTGCGCCGCAGCTACCTGGAGCTGGTCACCTCCAATCACCACTCTGTACAGGCCCTGTCTTGGAGGAAGCTCTACCTGAGCCGGGCCAAGCTGAAAGCCTCCAGCCGCACCTCTGCCCTGCTCTCAGGCTTTGCTATGGTGGCCATGGTGGAGGTCCAGCTGGAGATGCAGTACAACTACCCGCGCATGCTCCTCATCGCCTTTAGTGTGTGCACCACGGTGCTGGTGGCTGTACACTTATTTGCGTTGCTCATCAGCACCTGCATCCTTCCGCATGTGGAGGCGGTCAGCAACATCCACAACCTCAACTCGGTCAGTGAGTCACCTCACGAGCGCATGCACCACTACATTGAGTTGGCCTGGGGCTTCTCCACCGCCCTGGGCATCCTGCTCTTCCTGGCTGAGGTGGTGCTGCTCTGCTGGATCAAGTTCCTGCCCGTGGACTCTGGTGCTGCCAACCAGGTAGCTGTGGCGGCCGCCGAACTGGCACTATCTAAGGTGAACTGTAGTGGCCCCGCTGTGCCTTCCGCCGCTCCGCCAGGGCACAGCGGCTGGCAGGCGGCCTTGGCCTCCACCATCATCATGGTGCCGGTGGGGGTGATCTTTGTGGTATTCACCATCCACTTCTACCGCTCTCTGGTGAGCCACAAGACAGAGCGCCACCACCAGGAGATCGAGGAACTGCACAAGATTAAGGTGCAGCTGGATGGGTGCGAGAGAGGCCTACAAGCAGTGTGAGCTCTTTAGCTCCTCTTTCTGCTCTTCTGTCCACTCAATGGTATTGAGAAGCACCACAATTCCATTGAATAAGTGGGAGGATTAAGGATTTCTCCCACGCTACTTATTTATTGAGGTCAAAGGTTAGAGTATGTTTGTTTTGGAAAATAGTATATTGTCTCTGAGAGAAGTAGGATCTGATGTATTGAGGCAAATTAAAAGATGACTGATATTCTAATGTCTTGAGGGCTATTTTGTTAGTTCATTTGTGCCATCTCTCCACAATTCATAAAGGAAGTGGTGAAAATCGAAATAAGATGTCAAACTTCACTGTGTGCTTGTTGTCAGAAGGCAGTGTTATTGTGGTCATGCCAGGCTATGATTTACATAGATCATGGCAGTAAGCAGACACAGAAGCTGGTGGAAAAAAACAGTCCTTTGACTTTCTGAAGTTGTTCATGTTGCACCAAACAGTGTAATGTTTCTCAGTAGGTGACAGGAATTGGACCACACACAAATGCTGTGTGTAGACATGCTTTGGGGGGTATGTTCATTTAATCTGCAGTATAATCCATATTTTATATAGAACTCCCTCCCAAGCCTATAAACTGTCCTTTAGTTCATAGGCTACTCTGGTGTCAAAGATAGTGAATAGCTACGGTGCCTCGACGTTAAGACTTGTAATCTCCTCATATTAGTGAAGGACTGCTTATTTATTTTAAGTTACTGTTTATTATTGTTAAAATAAGAGATACTACCTGCTCACACAGCAAATTAATATTGAAGTTACAATGTATATGCTCACCAAAGTATAGTTTAGTGAACTTGCATTGGCTTATATAACAAAACTGTATAAACATTGACAAATAATAGAATGACTACATGAAATTCATATCCACTGTTATGCATTATATTTctttatgacaaaacatgtttTATGTGCCAAAAATGGCGAGGTAATTCCTCCTGTTCTATTCAAAACAACATTGACATGTTAATACTTGTCTGAACATGTTTACAATAGTATTATTGCAGCAGAGAGGATGCTTACTGTATGATAAGTAACCAGTGTCAAATGTCATTTGCACCATTACTTTTTATGGAAGTGTGTCGGCTATGATTAAAATGAAGAGGGTTACTGAATATATCACTGATGCAATGAACCAGGCACGATGATCATAACTCAATGCTTATTGAATACTTTAATTCTTAACGCTTTATTGGTGTGTTTGAGTGGTGAGCTATGAATGAGGAATGTAAATACAGTCAATGGTGCCAGTTCTCttgaataaatatttttttctctgcAAACATTCCAAACAAAGATTGTTCTGACCAAGAATCTCCTTTCAATGTGGTGGAAAAAGACGAAAGTGCACTTGTAGTTTAGTTCGAAAGTTAGTGTTAATACTAGAATGTCACATTTTCTTCTTCAGGTCATAATTAATTGTTGTAAATGTCCCTCTGAAAAAAGTTTATCTGACCAAACAAAAATATTATATGTTGATGGGAAAACAATGCTGTCAATTTGTTAAAACCTGACTTATTTTGGATTTAACAACACATGGTATTGTGGTACATTTACTGCTTTCTGTGCACTATGTAGTCTATTAAAGGTTCTGTGGAATAGCATGTCTTTTCATATCTTGTGAATGAATGTTAAATAAAGACTCGTCTTATTTTGTTATTTCCATGCCCTA
>XM_021623675.2
TTTTCGTACTCTGCCCTGGATCACGTGACCAGAATGCTCCGGACTAAAATAACAGAAGGAAAGATTGTAGTCAAGTCTCTCACAGCAAGTATTTTAACCACCCTCTCATTCATCGAAGTTCGCTAAGTTGCCATGAGCAGTGAGCTGAACGTGCCCATGGGCTCCCCGGCCCCGGGGGGCTCAGAGCAGATgccagagggtggagggatggactACAGGGACTGGGTGCGCCGCAGCTACCTGGAGCTGGTCACCTCCAATCACCACTCTGTACAGGCCCTGTCTTGGAGGAAGCTCTACCTGAGCCGGGCCAAGCTGAAAGCCTCCAGCCGCACCTCTGCCCTGCTCTCAGGCTTTGCTATGGTGGCCATGGTGGAGGTCCAGCTGGAGATGCAGTACAACTACCCGCGCATGCTCCTCATCGCCTTTAGTGTGTGCACCACGGTGCTGGTGGCTGTACACTTATTTGCGTTGCTCATCAGCACCTGCATCCTTCCGCATGTGGAGGCGGTCAGCAACATCCACAACCTCAACTCGGTCAGTGAGTCACCTCACGAGCGCATGCACCACTACATTGAGTTGGCCTGGGGCTTCTCCACCGCCCTGGGCATCCTGCTCTTCCTGGCTGAGGTGGTGCTGCTCTGCTGGATCAAGTTCCTGCCCGTGGACTCTGGTGCTGCCAACCAGGTAGCTGTGGCGGCCGCCGAACTGGCACTATCTAAGGTGAACTGTAGTGGCCCCGCTGTGCCTTCCGCCGCTCCGCCAGGGCACAGCGGCTGGCAGGCGGCCTTGGCCTCCACCATCATCATGGTGCCGGTGGGGGTGATCTTTGTGGTATTCACCATCCACTTCTACCGCTCTCTGGTGAGCCACAAGACAGAGCGCCACCACCAGGAGATCGAGGAACTGCACAAGATTAAGGTGCAGCTGGATGGGTGCGAGAGAGGCCTACAAGCAGTGTGAGCTCTTTAGCTCCTCTTTCTGCTCTTCTGTCCACTCAATGGTATTGAGAAGCACCACAATTCCATTGAATAAGTGGGAGGATTAAGGATTTCTCCCACGCTACTTATTTATTGAGGTCAAAGGTTAGAGTATGTTTGTTTTGGAAAATAGTATATTGTCTCTGAGAGAAGTAGGATCTGATGTATTGAGGCAAATTAAAAGATGACTGATATTCTAATGTCTTGAGGGCTATTTTGTTAGTTCATTTGTGCCATCTCTCCACAATTCATAAAGGAAGTGGTGAAAATCGAAATAAGATGTCAAACTTCACTGTGTGCTTGTTGTCAGAAGGCAGTGTTATTGTGGTCATGCCAGGCTATGATTTACATAGATCATGGCAGTAAGCAGACACAGAAGCTGGTGGAAAAAAACAGTCCTTTGACTTTCTGAAGTTGTTCATGTTGCACCAAACAGTGTAATGTTTCTCAGTAGGTGACAGGAATTGGACCACACACAAATGCTGTGTGTAGACATGCTTTGGGGGGTATGTTCATTTAATCTGCAGTATAATCCATATTTTATATAGAACTCCCTCCCAAGCCTATAAACTGTCCTTTAGTTCATAGGCTACTCTGGTGTCAAAGATAGTGAATAGCTACGGTGCCTCGACGTTAAGACTTGTAATCTCCTCATATTAGTGAAGGACTGCTTATTTATTTTAAGTTACTGTTTATTATTGTTAAAATAAGAGATACTACCTGCTCACACAGCAAATTAATATTGAAGTTACAATGTATATGCTCACCAAAGTATAGTTTAGTGAACTTGCATTGGCTTATATAACAAAACTGTATAAACATTGACAAATAATAGAATGACTACATGAAATTCATATCCACTGTTATGCATTATATTTctttatgacaaaacatgtttTATGTGCCAAAAATGGCGAGGTAATTCCTCCTGTTCTATTCAAAACAACATTGACATGTTAATACTTGTCTGAACATGTTTACAATAGTATTATTGCAGCAGAGAGGATGCTTACTGTATGATAAGTAACCAGTGTCAAATGTCATTTGCACCATTACTTTTTATGGAAGTGTGTCGGCTATGATTAAAATGAAGAGGGTTACTGAATATATCACTGATGCAATGAACCAGGCACGATGATCATAACTCAATGCTTATTGAATACTTTAATTCTTAACGCTTTATTGGTGTGTTTGAGTGGTGAGCTATGAATGAGGAATGTAAATACAGTCAATGGTGCCAGTTCTCttgaataaatatttttttctctgcAAACATTCCAAACAAAGATTGTTCTGACCAAGAATCTCCTTTCAATGTGGTGGAAAAAGACGAAAGTGCACTTGTAGTTTAGTTCGAAAGTTAGTGTTAATACTAGAATGTCACATTTTCTTCTTCAGGTCATAATTAATTGTTGTAAATGTCCCTCTGAAAAAAGTTTATCTGACCAAACAAAAATATTATATGTTGATGGGAAAACAATGCTGTCAATTTGTTAAAACCTGACTTATTTTGGATTTAACAACACATGGTATTGTGGTACATTTACTGCTTTCTGTGCACTATGTAGTCTATTAAAGGTTCTGTGGAATAGCATGTCTTTTCATATCTTGTGAATGAATGTTAAATAAAGACTCGTCTTATTTTGTTATTTCCATGCCCTA

Function

NR:

description
PREDICTED: protein orai-2-like

GO: NA

KEGG:

id description
K16057 ORAI2; calcium release-activated calcium channel protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623674.2 False 2677 mRNA 0.43 3 37887443 37891672
XM_021623675.2 True 2642 mRNA 0.43 3 37887443 37891682

Neighbor

gene id symbol gene type direction distance location
LOC110537549 LOC100380745 coding downstream 709 37802596 ~ 37886734 (-)
LOC118937921 NA coding downstream 1036 37886312 ~ 37886407 (-)
LOC110539143 LOC106567739 coding downstream 97266 37777987 ~ 37790177 (-)
ska2 ska2 coding downstream 146989 37712908 ~ 37740454 (-)
LOC110539142 NA coding downstream 209153 37672182 ~ 37706371 (-)
LOC110537551 LOC106567669 coding upstream 8171 37899853 ~ 37922703 (-)
polr2j polr2j coding upstream 44544 37936226 ~ 37938429 (-)
mcama LOC106567672 coding upstream 78581 37970263 ~ 38035480 (-)
mis12 mis12 coding upstream 166093 38057775 ~ 38062791 (-)
LOC110537557 NA coding upstream 205298 38096980 ~ 38104174 (-)
G1067924 NA non-coding downstream 111060 37774312 ~ 37776383 (-)
G1067872 NA non-coding downstream 127322 37758954 ~ 37760121 (-)
G1067876 NA non-coding downstream 173010 37713943 ~ 37714433 (-)
G1067832 NA non-coding downstream 277853 37609358 ~ 37609590 (-)
G1068021 NA non-coding upstream 56681 37948363 ~ 37948581 (-)
G1068082 NA non-coding upstream 164702 38056384 ~ 38056616 (-)
G1068091 NA non-coding upstream 181173 38072855 ~ 38073098 (-)
G1068092 NA non-coding upstream 183174 38074856 ~ 38075215 (-)
G1068093 NA non-coding upstream 187458 38079140 ~ 38079979 (-)
LOC110537546 ppm1e other downstream 220189 37603158 ~ 37667366 (-)
LOC110537540 LOC106567738 other downstream 380299 37505206 ~ 37507238 (-)
LOC110537534 LOC106568022 other downstream 856759 37019987 ~ 37039930 (-)
G1067426 NA other downstream 949464 36937319 ~ 36937979 (-)
LOC110537579 LOC106603438 other upstream 1149838 39041272 ~ 39072520 (-)
G1069456 LOC106567699 other upstream 1216618 39108300 ~ 39108962 (-)
fkbp6 LOC106567715 other upstream 1444422 39336054 ~ 39343006 (-)
G1071725 NA other upstream 3147184 41038866 ~ 41039931 (-)
G1073009 NA other upstream 4154181 42045863 ~ 42062632 (-)

Expression


Co-expression Network