LOC110537551 (LOC106567669)


Basic Information

Item Value
gene id LOC110537551
gene name LOC106567669
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 37899853 ~ 37922703 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623677.2
GTTGCAGACTGGTCAATCTCTTTATAAAGTGACCTTTCCGTACTCTTAATGAGTTTGACTGTATCAGATACGTTCCTTTTTGCACGATCACAAGGGTCGTCCATCAAATAATTTGAACAACCTCAGAACAGGATTTTCCTGTTCCTGtaaatatatatccaaaatgcgTCGTAGAGTGACAGGTACTGCTTTCGAGATGCTGGGCTGTGGTTCTACTATCACGAGCCCGAGGTTGAGCAAGCTTTTGCTTGCCCCCATCACGAAAACAATCACCCCCATCTCAACAGACAGCAAATTATTTCGTTCTACATCTTCAATACAGGGACATACAGAACTGGCACGAGAGAGGTCAAAAACCGTCACGTCGTTTTACAACCAGTCTGCAATCGATGCCTCGGCAGAAAAGgCCTTGGTCCGACTGACACCAACCACCCTGCTCTATGCTGGGAAGTCTCCGGATGGAAACCACATCCTGAGTAGTGCCAAGTACCTGCACAAGGAGTTGCCTGTGCGCATTGCCCACCGTATCAAGGGCTTCCGCAGCCTTCCCTTCATCATTGGCTGCAACCCCACCATCCTGCAAGTGCATGAGCTCTACATTCGAGCCTACCATGTGTTGAGTGATTTCCCAGTGATCAAGGACCAGGAGATGGACGCTCGATACAGTAAGCTGGTGCAGCAGCTCCTGGATGACCACAAGGATGTGGTCACTCTGCTGGCTGAAGGCTTCAGGGAGTGTCGGCGGCACATCCAGGATGAGACCCTGGTCCGTAACTTtctggacaccaccctcacctcccGTCTGGGCATCCGGATGTTAGCCACACACCACCTTGCCCTGCATGAAGAAAATCCTGATTTTGTGGGCATCATCTGCAGGCGACTCTCCCCCAAAAAGATCATTGAGAAATGGGTTGATTTTGCAAGGCGTCTGTGTGAGCACCAGTACGGTAACTCCCCGCGGGTGCGTATCAACGGCCATGTGGCGGCCCGCTTCCCCTTCATCCCCCTGCCCCTAGACTACATCCTGCCTGAGCTGCTGAAGAACGCCATGAGGGCCACCATGGAAAGCCATCTCGACACACCTTACAACTTGCCTGATGTCATAGTCACCATTGCTAACAACGACGTGGACTTTGTCATCAGGATCTCAGACCGTGGTGGCGGCATCCCCCACAGCATCCTGGACAAGGTGACGGACTACCATTACAGCACAGCTGAAGAGAGCTACCAAGACCCTCGCATGAACAACCTTTTCAACACCTTGACCAACAGTGGGCCTCAGTCCGGCCCAATGCACGGGTTTGGCTTTGGGCTGCCCACCTCCCGGGCATACGCTGAGTACCTGGGCGGTTCCCTGTCCATCCAGTCCATGCAGGGCATCGGCACCGACGTCTACCTGCGCCTGCGACACATCGACGGCAAGGGAGAAAGCTTCCGTGTCTGAGACCACTTGCAGAGAGCACAGATATAGTTCCACCAAGGGGCTCAACCATTTCAGTGTAAGCCAGGGCTAGGCTGATATAGTTGACCAGTTGTCTCCTCACAAACTGGCCTCTTAAAGTTTCCAATTTTTGCCTCAACTTTAAATGGCTGCCCAGTGGGCGCTTTCACCTCCTTTTTTGTTTTGCGTTTCCCTCTGTCACCACTCTTCAGCGTTGAGGGTTTTTGAACTCTTGAGCGTACAGGTCATAAGCAGAGCGTGTTTAGTGTTGACGTTAGTTTGGTAGAAAGGAAACAAATCTGCCTTAAAGTTAATTTGGTCTGCCTTTACGTTACTTGTGTTGCATAGCTTTTGCAAATATAAAAAGACTAAAGAACAGAAGGGAAAGGTCTCTTTACACACTCCAGTGGCTACTACATGAGCTTGGATGACGCTGCCCTTAAATGACTTCTCTTGAATCGCCTGTAGAGGACACCACGGAGGATATTGCCAAAACACCAGTCAAAACACACTGCCAAAACAATGCTTGTGATTTAAATTTGAAGAAAACAAGCAGAAGGAACTGTTGAGTGAACTCTTGGTTCAGCGCCATTTTGTCAAGCTCTTAAGCAAGGCCACGAGCAGAGATGTTCAGTTGCCTTACTGTGGGCGATGCTGGTCCTTACAAAAACATGCTAATGTAACTTGTTCAATTTCATCTTTGTAATGCAATTTCACACACAGCACGTTAGTAAATCTAATAACATTTGCATAATACATTTGGGGGGGGGTTGGAAATGCTCATCACTTGCTGTGTCATAATATCtgaactataatttgttttttgcTTTCAATACACTGGAAGAAGTATTGTTTATTCAAGTATTCAAAATGTCTATTTGAGGTTGCTAATTTCCTTTTGTTTTGAAGTAGGCTTGGCGTCGAAGGCATTTTTTACTGAACACATTCCGAGGAAGGTCAATTTTTCATACTTTTGAAACCGTATTTTCAGTATGGTGGACGTTTTAAGATGCATGATGAATTATCAGAATATAGAACTGTAGGTATGTGGTCTGGCTTGCTGGCATAAGCGTGCTGGGAATTTGCATGTAAATCCTTCAGTGTACTCAAATCAGTGAGAAGCATTTGCAATGTTTCACCTCGATGAATATACCTCTGGTTATTGGGGCTAGGTAGAGAAGAATTAGTATCTTTCTAGCATGAGAATTCCTGTCGGATAGACTGCAGTGACCTCATGAAGTATGTGCCCTGTCTAAATCTTCCCCCTGCTGGCAAAAGTGATGAAGCTTGACACAAAAAACAGCATAATAGTTTGAGTTATGACTtgtatacagaacaaaaatatgaatgcaacatgtgaagtgttgatttcatgagctgaaataaaatattccaaaGATTTCCCTAAA

Function

NR:

description
3-methyl-2-oxobutanoate dehydrogenase [lipoamide] kinase, mitochondrial-like

GO: NA

KEGG:

id description
K00905 BCKDK; [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623677.2 True 2853 mRNA 0.47 11 37899853 37922703

Neighbor

gene id symbol gene type direction distance location
LOC110537550 LOC106567668 coding downstream 8171 37887443 ~ 37891682 (-)
LOC110537549 LOC100380745 coding downstream 13119 37802596 ~ 37886734 (-)
LOC118937921 NA coding downstream 13446 37886312 ~ 37886407 (-)
LOC110539143 LOC106567739 coding downstream 109676 37777987 ~ 37790177 (-)
ska2 ska2 coding downstream 159399 37712908 ~ 37740454 (-)
polr2j polr2j coding upstream 13523 37936226 ~ 37938429 (-)
mcama LOC106567672 coding upstream 47560 37970263 ~ 38035480 (-)
mis12 mis12 coding upstream 135072 38057775 ~ 38062791 (-)
LOC110537557 NA coding upstream 174277 38096980 ~ 38104174 (-)
nup88 LOC106567676 coding upstream 236897 38159600 ~ 38181614 (-)
G1067924 NA non-coding downstream 123470 37774312 ~ 37776383 (-)
G1067872 NA non-coding downstream 139732 37758954 ~ 37760121 (-)
G1067876 NA non-coding downstream 185420 37713943 ~ 37714433 (-)
G1067832 NA non-coding downstream 290263 37609358 ~ 37609590 (-)
G1068021 NA non-coding upstream 25660 37948363 ~ 37948581 (-)
G1068082 NA non-coding upstream 133681 38056384 ~ 38056616 (-)
G1068091 NA non-coding upstream 150152 38072855 ~ 38073098 (-)
G1068092 NA non-coding upstream 152153 38074856 ~ 38075215 (-)
G1068093 NA non-coding upstream 156437 38079140 ~ 38079979 (-)
LOC110539142 NA other downstream 193482 37672182 ~ 37706371 (-)
LOC110537546 ppm1e other downstream 232599 37603158 ~ 37667366 (-)
LOC110537540 LOC106567738 other downstream 392709 37505206 ~ 37507238 (-)
LOC110537534 LOC106568022 other downstream 869169 37019987 ~ 37039930 (-)
G1067426 NA other downstream 961874 36937319 ~ 36937979 (-)
LOC110537579 LOC106603438 other upstream 1118817 39041272 ~ 39072520 (-)
G1069456 LOC106567699 other upstream 1185597 39108300 ~ 39108962 (-)
fkbp6 LOC106567715 other upstream 1413401 39336054 ~ 39343006 (-)
G1071725 NA other upstream 3116163 41038866 ~ 41039931 (-)
G1073009 NA other upstream 4123160 42045863 ~ 42062632 (-)

Expression


Co-expression Network