mis12 (mis12)


Basic Information

Item Value
gene id mis12
gene name mis12
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 38057775 ~ 38062791 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623682.2
CCACGGAGTTCTAGGTTCAACCAACGATGTGTTTGTTATGTGCTCCGCCAGAAAAGTAGACGGCGATACTGTGCATGCAACATCTTGTAGTACCAGATGACGACTACAGACAAAAAGGGCGCGGGAAATTTGGAAATGGCGGAGTACATAACCAGTGAGGAGGAGGCaacgtcttcctcctccctcgAGCTGTACGAGGCACAGTTCTTTGGTTTCACCCCTCAGACCTGCATGGTGAGAGTATACAGTGCCTTTCAGGACTGCCTGAATGAATTGCTACTTGTCGTAGAAGCAGTGTTCGTGAGAAAACTAAGCGGGACTGAACCAAAGGAAGAGCAACTACATTTAAGGGCAAGAGAATGCACCCAAAAGTTGCAGATATTCCTTCAGGAACGCTTCAAGCGTCTGTCTGGTCGCATGGAAACCGTTTTGGTCAACAACGTCCTCTCAGTCCCGCCAAATGTGTTGCTGCCTGAAGACCAGCCACACAAAAAGTACCCTCAACGTTTAGAGGAGGTTCTTAAGCTGGAGTCTTCCCTGGCAGAGCTGCAACAAGCGTACCAAGTGGAGGTGTGTGCCAGGCAGGCCTTGCTGGCTGAACTGGAGGAGCAAAGAGAGGTCCAAGAGCAGCTGGATGGGATCCTGAGATGGATTGGAGAACTACAGGCAGCATGGATGCAAGAGGGAATGGGCAGCTTTCACAACAGCTTCTGTGTGATGATGCAGTCAGTCAAGAAACTGCAGGCTGTCTTTGGAGAGATCAATAAGAAAAGCAAAAGACTGAATGAGAACTCGTCAGTGGGATGGACCCacatggtgtaaaatacttgttaGTGGTGTTGTGAGATGGGTAGGTTGCAGGTGACTTGGAATAGCACCCTCTGTCAGACAAAAGACAAATAGAATTCTATGCCTTTGGATGTATTAACAATTATACAATTTGTCAGACACAAGTCTTACAAACAAGAATGTGAGCAGTTTTTAAACCTCAATTCATCTTTGGTTTGATATATTTACCTTTTGATGGTTTActatacattctaaatatatattaTCCACAATTTGAGTAGTAAGAGGCTCAAGCAGTTAGTCTTTTTATTTTTATCTCCCAGTCTTAACTCTGGTTctttgaaaagcattttttattttttataaatgaatGTTAATTAGTGAATGAACTTTGGAGCCATAGTCACCACAAGGGGGAAGCATTGGTTTGTTATTGCCATCTCAAATGTAAATTGACCAAGCAGTGCCATTGTACTGTGTGAATTATTTTTGATTCGTTGCCGTATTATCTTTTTGGCAAAATCATTAAATGTACAACACTTTAATAATTTTGAATGAATAAAAGTGTAATTGTGCAATTGCATCTGATTTAAATCAGGTATAATTTAAATCATTCCAATCCTTTCTCATCATGGTCTCTAAGTCAGATGCAGTCTAGGCTTGTCTGTGATGTCTAATGCTGTATGATGTTGACTGACTGATAAGTAGCTGGTTTGACAGTGGGCTGCTCTGACAGTATGGTCTTGGTGGGAGTCCCAGCAGTGATCATACAGTTGTGTGATGTCCATGGCTGGAACCCCAGGCTCCATATTCACAAAGGGTCTTTCCTGTTAATGGATACCGGGAATGTAATTACAGGCtatgtttaaaaaatacaataaaaacacatttaattgAATGTTGGCCTACATTTTACCAGCAGAGAGTACATTCAAATAGGTGTAAAGATTTCCCCCCCAAACAAGGCAATATGCACTGGACATCCAACATGTTGTTCTGGTTTCAGTATGTTCAGATGCACATTTACATGCATGCTCACACCCCAATTCTAAATTCATTGTATAATTATTTGAATCATTTGTTAGCCTGTTGTGGTGGATCCAGTCAGGTAACATCAAAGTAGCATAACATGTCTGTGAAGTCAGGTTCAAACCTTTTCATGCTCATAATTAAACATGAGACGTATGTCTGGTTTCTTTTTATTTCTGAAGCCTGGGGATacttttatctcaa

Function

symbol description
mis12 Predicted to be involved in kinetochore assembly; mitotic sister chromatid segregation; and protein localization to kinetochore. Predicted to act upstream of or within cell division and mitotic cell cycle. Predicted to be located in kinetochore and nucleus. Predicted to be part of nuclear MIS12/MIND complex. Orthologous to human MIS12 (MIS12 kinetochore complex component).

NR:

description
protein MIS12 homolog

GO:

id name namespace
GO:0000775 chromosome, centromeric region cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K11543 MIS12; kinetochore-associated protein MIS12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623682.2 True 2022 mRNA 0.41 2 38057775 38062791

Neighbor

gene id symbol gene type direction distance location
mcama LOC106567672 coding downstream 22295 37970263 ~ 38035480 (-)
polr2j polr2j coding downstream 119346 37936226 ~ 37938429 (-)
LOC110537551 LOC106567669 coding downstream 135072 37899853 ~ 37922703 (-)
LOC110537550 LOC106567668 coding downstream 166093 37887443 ~ 37891682 (-)
LOC110537549 LOC100380745 coding downstream 171041 37802596 ~ 37886734 (-)
LOC110537557 NA coding upstream 34189 38096980 ~ 38104174 (-)
nup88 LOC106567676 coding upstream 96809 38159600 ~ 38181614 (-)
LOC118937669 NA coding upstream 179317 38242108 ~ 38247683 (-)
LOC110537564 LOC106567681 coding upstream 242402 38305193 ~ 38314622 (-)
LOC110537566 LOC106567683 coding upstream 368638 38431429 ~ 38434087 (-)
G1068082 NA non-coding downstream 1159 38056384 ~ 38056616 (-)
G1068021 NA non-coding downstream 109194 37948363 ~ 37948581 (-)
G1067924 NA non-coding downstream 281392 37774312 ~ 37776383 (-)
G1067872 NA non-coding downstream 297654 37758954 ~ 37760121 (-)
G1067876 NA non-coding downstream 343342 37713943 ~ 37714433 (-)
G1068091 NA non-coding upstream 10064 38072855 ~ 38073098 (-)
G1068092 NA non-coding upstream 12065 38074856 ~ 38075215 (-)
G1068093 NA non-coding upstream 16349 38079140 ~ 38079979 (-)
G1068166 NA non-coding upstream 155329 38218120 ~ 38218402 (-)
G1068168 NA non-coding upstream 156585 38219376 ~ 38219821 (-)
LOC110539142 NA other downstream 351404 37672182 ~ 37706371 (-)
LOC110537546 ppm1e other downstream 390521 37603158 ~ 37667366 (-)
LOC110537540 LOC106567738 other downstream 550631 37505206 ~ 37507238 (-)
LOC110537534 LOC106568022 other downstream 1027091 37019987 ~ 37039930 (-)
G1067426 NA other downstream 1119796 36937319 ~ 36937979 (-)
LOC110537579 LOC106603438 other upstream 978729 39041272 ~ 39072520 (-)
G1069456 LOC106567699 other upstream 1045509 39108300 ~ 39108962 (-)
fkbp6 LOC106567715 other upstream 1273313 39336054 ~ 39343006 (-)
G1071725 NA other upstream 2976075 41038866 ~ 41039931 (-)
G1073009 NA other upstream 3983072 42045863 ~ 42062632 (-)

Expression


Co-expression Network