LOC110537557


Basic Information

Item Value
gene id LOC110537557
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 38096980 ~ 38104174 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623685.2
TATGACTGAGAGGAAATGAGTTGGCTGAAGCCTCAGACCTCAGAAGTGAATCATGGTCCCATAAGAGTCTCCCTATCTTCTGTACACAGTTTAGAACTAAGAATATCATTGACCCACACAATCCTAATTTTCAGCTGTTCGACTTTCCTTGTAAGATCACTCATGGAACCTTTACGGCATCTCTTCTGGCTGTGGGTGGTTCTTGGAATGATTTTTGTTTCCATGGTAATAGGTCTCATCTTCTTTCTTATCAACAAGTGTATTTCCAAGAAAGCTGctgaacaatacaatacaaatacaccAAGTCACACTACGCCTCAGTATTATGCCCAGAGCAGCAAATATCATCTCAAAGATCTGGAGGATGATTTGCCTCCTTTACCACCCAGGACTCAGTTTCTCACATCCTGTCCCAAGACTGAAAGCTATGAGAACCTTGTAGGGCTACCTGACTATGTGAAAGTAGATGACAATGCCCCTCCTCCACCGTACCATCACACAGAGACACTAGTGTGTAAGGACAATGACAGCCTTCCAGAGGACTACGATGACATCGGAGCAGACTGCCAGATCGAGGAGGACTATGATGATCTGGGATAAAGCCAGAGGCAACGGAGACTATACTAAAGACACTGTTGTGGTACATATGTAATGTATACTCCTACTAGCCAAAAATAGATGTTCTGCAGAAATACGACTATCCCTTAGCTGATACGGCTTCATGTTTAAATAATTTATTTGGTAATGCTTTACCAGTTTGCATAAGACTAAAGTATAGTTTTCTGGTATTTACCAAAAAGATCTCTTTTAACAATGGACAATTTCTTACTTAAGAATTCAACACAATTTAATTGTGTTTCAGGGTATACTATGTAACTGAAACTATTAGGCTGTAGTTAGCAGAAAAAAATAAAGCTGTGTAGTTTCAATTGAATATTGAACATAATATAATGGTGCACAGAAAATTAACAATCTTAGTGATTACCTAGTACCATATGATTGTCAATGGTGCTGGTTTTGCTAACTTTTTAAATCCCATAGACCAAACCAGTTGTATCAGGAATCAACACAAGTGAAGTGGTATATTTAATCATTTTACTCAGTCTTTACATCTAAGTAGTAACCTCCGAGGCTTGCTGAGTTTACAAACCAGCATACAGTTGTTAAAACCCTGTAGTTCTAGGAATCATCGATGTTAGATTGTGTTTACAACTGTGTACTTATGCTCTTAGCTCACTATGGATCATGAAGCAGCAGACCTTGCCATGTTTTATGAAACCAATAACTGTAAAAGGTTTCCAACAGATCGGATATAGAGTGTAAGAATAGAAATGGGTGAAAAAGGTGACTTTCCTTGTCCACCAGTGAAAACTTAATTTTGCAAAGTTAAAGATTAGATCCTCTGGTTATTGACAATGAAACAAACAATAGGCATTTCAAAATCTGTATTGATTAAAATACAAATGGAAATCTATAAGCCCTGCCATAAAGGTAAAGAACTGCAAAAAAGTGAAGCGTAtactacttactgtatgtaaccgaaactttaaaaaaaagagaAGCCGTTTAGTTTCAATTTGAATACTGAAGGGTTTGTTGCAGGGGTTTCAAAATGGCTAGTCTTGTCGAGCCTAGAAGCCTGGCATGCAACACAATGGTCGGTCAAATTGACTTCCCCTTCCCTCCACACTGCAATGAGGGCAGTACTATAGAGTAACGTATGCTTGTTTGATTTGTCCACAGTACATGTTTTCTACAGTTGCAATAAACAATGTAAGTTACGTAAGCGTTCTCACATTGTTGATCCTAGTGCATCCAAGCACTCTTTTGGTACTGGAATCAAATGACTGAATACATTTCTAATTTCATTATGGAACTCCTTACAGAAAAACTTGCTTCAACTGATGCAACACTGCAGAAAATTTACAAAGAAAATATATCCAGCATTATCTACATATGCCACACGTTTATTCTTTTTAAAAAGTAAAAGAAAACACTCAATCTGAATTCATTCATTCAGATTTTTTCCACTGTTTCCCATCATTTGACAATATTGTTGAGCCTCATTTTTTCCCCACAGAGATAAAGCCAAATCTCAACGCAACCAAAGGTTAACCATCAAAAGTCACTTCCTGTTACGTCCACTCATGTGGTCTTAAAGTGACAGTCTGGCTTATTGAACAGTTTGAGGGAGATGCAAGTCACACAACAATCTCCGAAAAGCTCTGGTTGGAGATTGGCGTTTTCCATCCAGAACTAGAGAAACAAGTCGGAAAAAAAGACCAAGTTTGTCCCTCGGTCTCTCACTGAGGAAAGGTCCATTATAAAGTGATCCTGTGGTGGGGGGCTAGATTAACCCCCGAGgcgctgtccctctccccaggcGAACCCCCCCGGACGCTCTTCGGGAAGAGGGTTGTAGTTGGCATCCTCCTCTGGAGTGTCAAACAGCATCtta

Function

NR:

description
uncharacterized protein LOC110537557

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623685.2 True 2458 mRNA 0.39 5 38096980 38104174

Neighbor

gene id symbol gene type direction distance location
mis12 mis12 coding downstream 34189 38057775 ~ 38062791 (-)
mcama LOC106567672 coding downstream 61500 37970263 ~ 38035480 (-)
polr2j polr2j coding downstream 158551 37936226 ~ 37938429 (-)
LOC110537551 LOC106567669 coding downstream 174277 37899853 ~ 37922703 (-)
LOC110537550 LOC106567668 coding downstream 205298 37887443 ~ 37891682 (-)
nup88 LOC106567676 coding upstream 55426 38159600 ~ 38181614 (-)
LOC118937669 NA coding upstream 137934 38242108 ~ 38247683 (-)
LOC110537564 LOC106567681 coding upstream 201019 38305193 ~ 38314622 (-)
LOC110537566 LOC106567683 coding upstream 327255 38431429 ~ 38434087 (-)
LOC110537568 dyrk1a coding upstream 530372 38634546 ~ 38677873 (-)
G1068093 NA non-coding downstream 17001 38079140 ~ 38079979 (-)
G1068092 NA non-coding downstream 21765 38074856 ~ 38075215 (-)
G1068091 NA non-coding downstream 23882 38072855 ~ 38073098 (-)
G1068082 NA non-coding downstream 40364 38056384 ~ 38056616 (-)
G1068021 NA non-coding downstream 148399 37948363 ~ 37948581 (-)
G1068166 NA non-coding upstream 113946 38218120 ~ 38218402 (-)
G1068168 NA non-coding upstream 115202 38219376 ~ 38219821 (-)
G1068141 LOC106567677 non-coding upstream 119339 38223513 ~ 38224468 (-)
G1068184 NA non-coding upstream 146962 38251136 ~ 38251342 (-)
LOC110539142 NA other downstream 390609 37672182 ~ 37706371 (-)
LOC110537546 ppm1e other downstream 429726 37603158 ~ 37667366 (-)
LOC110537540 LOC106567738 other downstream 589836 37505206 ~ 37507238 (-)
LOC110537534 LOC106568022 other downstream 1066296 37019987 ~ 37039930 (-)
G1067426 NA other downstream 1159001 36937319 ~ 36937979 (-)
LOC110537579 LOC106603438 other upstream 937346 39041272 ~ 39072520 (-)
G1069456 LOC106567699 other upstream 1004126 39108300 ~ 39108962 (-)
fkbp6 LOC106567715 other upstream 1231930 39336054 ~ 39343006 (-)
G1071725 NA other upstream 2934692 41038866 ~ 41039931 (-)
G1073009 NA other upstream 3941689 42045863 ~ 42062632 (-)

Expression


Co-expression Network