LOC110537564 (LOC106567681)


Basic Information

Item Value
gene id LOC110537564
gene name LOC106567681
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 38305193 ~ 38314622 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623696.2
AATGTGCAACACAGCGCGCTATGAGCAACAGCAAAAAGAGCTGCACTTCCTCGTTGACTGGATACactcgccacacacacacacacacgaacaaacAAGACTGCATTGTTTTGATTGCATTTTACACTGGTCACTGTATCTGGAAAGTAGGCTACAAAAGGCTTGTGAACATACAATATTGAATAGGATAATTTTTCCATATCGAAAAGGATTGTAATTTACACTGTTGCTGTGTTAAGAAGCCGCCGATCAATTCAACAGATTCCTGATGTGTGACCTCAGCATGGACCAAGTGGCCCCCCTGTCGACTAGCTACCGCTCCAGCCTCAAGCGGCAGGCAGCCTTTGACCTGTTTGAAGATCCCATGTCTCTGTTCTCTGGATACTTCCTCCCCTCAGACGATGACCAGTCTCTTCAGGAGGTGCCCTCTGGCCTCAACTGTTTCTCACACGACATGggcccctgctctgttcccctgtTGACCCCTTGCAGTAAGGCAGTGATGAGTCAGGCCCTGAAGGACAGTTTCAGTGGCTTCTCCAAGGTCCAACGTTGCTATGGCATCTCCAACAACCCTCGTAAGTGGACTAAGCAGCATGTGATGCAGTGGCTGCACTGGGCGGCCAGTGAGTTCAGCCTGGCCAACGTCCATTTCTTTAAGTTTGACATGAACGGCCAGGAGCTGTATGACCTGGGTAAGGAGAGCTTCCTGGACCTGGCTCCAGACTTTGTGGGCGACATTCTGTGGGAGCACCTGGACCAGATGATGAAAGAGTGTCAAGAGAAAGAAGAATCCATAAGCCTCAGCAGTGTTGTGCCCTCCGTAACTAACTGGATGAGCTCTAGCGGCTTTAGTCTGGAGGAGACCCAGTGTGCCCTGCAGGTGCCTGACAACAACGACAGTCTGCTTAGAGAGCTGTTTGAGACCTCAGACAAGACCGCCCTGCTGACTCCAGATCAGGAGTTCTCCATGTTCTCCAAGCCCCAGCTGAGCACGGTCAACGTCAGCTACGTTAGGAGCAACCCAGGCACAGGGCAGCTCTCCAAAGCCTTCTTGTCCCAGGACCAGAGTTTGTGTTCGTTGGAGAGTGTGGATAGCATCGAGGGGCCAGAGTCCATGCTGCACTCCTGGGGCAGCCAATCCTCCCTGGCGGACAACCAGAGGGTGCCGTCCCACGACAGCTTTGAGGACGAGTACAACAGCAGCCCACTGAGTCTGGAGAAGCAGGGCCTGTCCTTCAAGGACTACGTCCAGGAGAGGAACGAGCCTGTGGAATTGGGAAAGCCTGTCATAGCTGCTGCAGTGCTGGCTGGCTTTACTGGAAGTGGTCCTATCCAGCTGTGGCAGTTCCTGCTGGAGCTCCTGACTGATAAGAGTTGTCAGGCCATCATCAGCTGGACCGGAGACGGCTGGGAGTTCAAACTCACCGACCCAGATGAGgtggCTAGACGCTGGGGACGCAGGAAGAACAAACCCAAGATGAATTACGAGAAGCTGAGCCGTGGCCTGCGATACTATTATGACAAGAACATAATCCACAAGACATCGGGCAAACGCTACGTCTACCGCTTCGTCTGCGACCTGCAGAACCTTCTGGGCTACTCGGCCGAAGAGCTCCACATTATGCTGGGGGTCCAGCCTGACACTGAGGATTGAACCAATTGCCGTTTTATCGAAAGGGAAGGGGTTGGAGATGGAGTCAATGGGGCTTCACTACCCCAACCTAGCAAAAGTTGCTGATGGTACAGGCCACCTGAAGGTCATTTCTGGTCATTAAACAGGTGGCACTGAGTGATGTGCACTGACAGTCGCTACACTGGTGGACAGGCAGCGAACATCTCTAATTTGGAGCAGCCGCTCCTGTCTTGGCTCTTGTGCCATCAATGTGCATTGTTGTGCAAGCTTTTGGTTGAGAGGGGTGCCAGTATTTAAATCAAGCGTTCCCTCTAGGTGAAAGTGTTGTTCTGCAAATTGTAATGGATCAGATCACCATCTGCAAAGTGGAAAGCTGTCGATTGCACAGATGATAATTGCGATCAATGTAACATAGCAGATTTTTTAATTCAAGCCTGATACTCAGCAAGTGTGGTGTTTACAGAGTCTGAATAGTGGACATTTTTACATACTGTGAATGATCTTGGGGTTACCAAGTGAGAATGCTTTTGAGGTGGCGGCTCCAGCACCATAAGGTTAGGCACCACACCCTCATGGCGTAGTTTTCACAATCAACTTTTACCAGTTGAATGTAGACACATGTAATCCTTTTTTGTATTACAAGTATTCCGAAATATTTGATTAAATTATACAAACGAGGCAATATCTCATATATCTCATATTTCCATATCGCGCAAATCCATTTTTCTGGACACTGGATAAAGTCAGTTTAAATATTTTGGTTTCCTTTTGTTAAGACACTCCAGAACCGGACTTGTCCAGAGCAGGTTGTAGATAAATGCTTTTAAAAAATCTTTCTATCTGTAAAATACTGAAGACATCCATTTGGTGCATTTTCCTGATTTATTTTTTATCGAAAATACAAAATTGACAACATATCAACAATTCCCTCTGGGCAAGTCTGGAGAATATATCTAAGGATAACCAAACAAAATTTGGTAAATGCAGATGCTTCTGAAGCTGGTGTGTGGGAAGAGTCTGACTTGCCCAGAGGGAAAATGGCAGCTAAAGACAAGTACACTGAATTTAGACTACCAAATGCAAATGCCTATTTAGACAAAATCACTATCTCTTCAGAGTAAGTTACTAACTAAATATAGTCCAGTTTGTAACATTCTctatgaaatgtgattttaaatcATGTTTAATTTAATGTAGTGAGCTTTGAAATGATTGCTGTATGTCCATTTTAAAGTGGTTGAAATTCATTAAAATGTTGATGAGAAACTAAAGAAAATACACATTTTCATCAAGATTTTTACATTTTATGTTTACTTTTTGAAAATATTAATGGACCAAAATAGCAACAAATCTCAAAATTGATAGGTAGATGAAAAATGGTGCCTGGAGTTTTGATGgagaatgtatttttttcttgATTTTATGGAATAGCTAAGATTGCCTTTACTGTTGTGCTTCGTAATGCATTGTCCTGCTGACCAGCTTGCAGCTCAACTGGAATACCAGTCATTGTGGTTACTGTATTTTAACTCTATCGAAAAGGTCCCatagtcccatagggtggcgcacaattggcccagcgtcatctgggtttggccggggtaggccgtcattgtaaattagaatttgttcttaactgacttgcctagttaaataaaggttaaataaatattctATGAATATGCATATAAGGTTGAATGTAATGGTGTAGCAGCTATCGTAATTATGTTTTGTTGTATGTCTATCAAGGGATCTGTTTGTGCCTCGATTATTGTTTATTTCTTTTTCTGTGGCCAAAGCGACATGTACActgccttcaaagtattcacaccccttgactttttccacattttgttgttatagcctgaatttaaaatggataacaTTGAGTTttctttgtcactggcctacacccaataccccatattgtcaaagtggaatgatgttttttcaaaacatttacaaatgaataaaaatgtcaaatctgaaa
>XM_036937517.1
tgacctccacaagtctggttcatctttgggatgATTTCCCCAAcaactgaagATTCCTGATGTGTGACCTCAGCATGGACCAAGTGGCCCCCCTGTCGACTAGCTACCGCTCCAGCCTCAAGCGGCAGGCAGCCTTTGACCTGTTTGAAGATCCCATGTCTCTGTTCTCTGGATACTTCCTCCCCTCAGACGATGACCAGTCTCTTCAGGAGGTGCCCTCTGGCCTCAACTGTTTCTCACACGACATGggcccctgctctgttcccctgtTGACCCCTTGCAGTAAGGCAGTGATGAGTCAGGCCCTGAAGGACAGTTTCAGTGGCTTCTCCAAGGTCCAACGTTGCTATGGCATCTCCAACAACCCTCGTAAGTGGACTAAGCAGCATGTGATGCAGTGGCTGCACTGGGCGGCCAGTGAGTTCAGCCTGGCCAACGTCCATTTCTTTAAGTTTGACATGAACGGCCAGGAGCTGTATGACCTGGGTAAGGAGAGCTTCCTGGACCTGGCTCCAGACTTTGTGGGCGACATTCTGTGGGAGCACCTGGACCAGATGATGAAAGAGTGTCAAGAGAAAGAAGAATCCATAAGCCTCAGCAGTGTTGTGCCCTCCGTAACTAACTGGATGAGCTCTAGCGGCTTTAGTCTGGAGGAGACCCAGTGTGCCCTGCAGGTGCCTGACAACAACGACAGTCTGCTTAGAGAGCTGTTTGAGACCTCAGACAAGACCGCCCTGCTGACTCCAGATCAGGAGTTCTCCATGTTCTCCAAGCCCCAGCTGAGCACGGTCAACGTCAGCTACGTTAGGAGCAACCCAGGCACAGGGCAGCTCTCCAAAGCCTTCTTGTCCCAGGACCAGAGTTTGTGTTCGTTGGAGAGTGTGGATAGCATCGAGGGGCCAGAGTCCATGCTGCACTCCTGGGGCAGCCAATCCTCCCTGGCGGACAACCAGAGGGTGCCGTCCCACGACAGCTTTGAGGACGAGTACAACAGCAGCCCACTGAGTCTGGAGAAGCAGGGCCTGTCCTTCAAGGACTACGTCCAGGAGAGGAACGAGCCTGTGGAATTGGGAAAGCCTGTCATAGCTGCTGCAGTGCTGGCTGGCTTTACTGGAAGTGGTCCTATCCAGCTGTGGCAGTTCCTGCTGGAGCTCCTGACTGATAAGAGTTGTCAGGCCATCATCAGCTGGACCGGAGACGGCTGGGAGTTCAAACTCACCGACCCAGATGAGgtggCTAGACGCTGGGGACGCAGGAAGAACAAACCCAAGATGAATTACGAGAAGCTGAGCCGTGGCCTGCGATACTATTATGACAAGAACATAATCCACAAGACATCGGGCAAACGCTACGTCTACCGCTTCGTCTGCGACCTGCAGAACCTTCTGGGCTACTCGGCCGAAGAGCTCCACATTATGCTGGGGGTCCAGCCTGACACTGAGGATTGAACCAATTGCCGTTTTATCGAAAGGGAAGGGGTTGGAGATGGAGTCAATGGGGCTTCACTACCCCAACCTAGCAAAAGTTGCTGATGGTACAGGCCACCTGAAGGTCATTTCTGGTCATTAAACAGGTGGCACTGAGTGATGTGCACTGACAGTCGCTACACTGGTGGACAGGCAGCGAACATCTCTAATTTGGAGCAGCCGCTCCTGTCTTGGCTCTTGTGCCATCAATGTGCATTGTTGTGCAAGCTTTTGGTTGAGAGGGGTGCCAGTATTTAAATCAAGCGTTCCCTCTAGGTGAAAGTGTTGTTCTGCAAATTGTAATGGATCAGATCACCATCTGCAAAGTGGAAAGCTGTCGATTGCACAGATGATAATTGCGATCAATGTAACATAGCAGATTTTTTAATTCAAGCCTGATACTCAGCAAGTGTGGTGTTTACAGAGTCTGAATAGTGGACATTTTTACATACTGTGAATGATCTTGGGGTTACCAAGTGAGAATGCTTTTGAGGTGGCGGCTCCAGCACCATAAGGTTAGGCACCACACCCTCATGGCGTAGTTTTCACAATCAACTTTTACCAGTTGAATGTAGACACATGTAATCCTTTTTTGTATTACAAGTATTCCGAAATATTTGATTAAATTATACAAACGAGGCAATATCTCATATATCTCATATTTCCATATCGCGCAAATCCATTTTTCTGGACACTGGATAAAGTCAGTTTAAATATTTTGGTTTCCTTTTGTTAAGACACTCCAGAACCGGACTTGTCCAGAGCAGGTTGTAGATAAATGCTTTTAAAAAATCTTTCTATCTGTAAAATACTGAAGACATCCATTTGGTGCATTTTCCTGATTTATTTTTTATCGAAAATACAAAATTGACAACATATCAACAATTCCCTCTGGGCAAGTCTGGAGAATATATCTAAGGATAACCAAACAAAATTTGGTAAATGCAGATGCTTCTGAAGCTGGTGTGTGGGAAGAGTCTGACTTGCCCAGAGGGAAAATGGCAGCTAAAGACAAGTACACTGAATTTAGACTACCAAATGCAAATGCCTATTTAGACAAAATCACTATCTCTTCAGAGTAAGTTACTAACTAAATATAGTCCAGTTTGTAACATTCTctatgaaatgtgattttaaatcATGTTTAATTTAATGTAGTGAGCTTTGAAATGATTGCTGTATGTCCATTTTAAAGTGGTTGAAATTCATTAAAATGTTGATGAGAAACTAAAGAAAATACACATTTTCATCAAGATTTTTACATTTTATGTTTACTTTTTGAAAATATTAATGGACCAAAATAGCAACAAATCTCAAAATTGATAGGTAGATGAAAAATGGTGCCTGGAGTTTTGATGgagaatgtatttttttcttgATTTTATGGAATAGCTAAGATTGCCTTTACTGTTGTGCTTCGTAATGCATTGTCCTGCTGACCAGCTTGCAGCTCAACTGGAATACCAGTCATTGTGGTTACTGTATTTTAACTCTATCGAAAAGGTCCCatagtcccatagggtggcgcacaattggcccagcgtcatctgggtttggccggggtaggccgtcattgtaaattagaatttgttcttaactgacttgcctagttaaataaaggttaaataaatattctATGAATATGCATATAAGGTTGAATGTAATGGTGTAGCAGCTATCGTAATTATGTTTTGTTGTATGTCTATCAAGGGATCTGTTTGTGCCTCGATTATTGTTTATTTCTTTTTCTGTGGCCAAAGCGACATGTACActgccttcaaagtattcacaccccttgactttttccacattttgttgttatagcctgaatttaaaatggataacaTTGAGTTttctttgtcactggcctacacccaataccccatattgtcaaagtggaatgatgttttttcaaaacatttacaaatgaataaaaatgtcaaatctgaaa

Function

NR:

description
protein C-ets-2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K21932 ETS2; C-ets-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623696.2 False 3626 mRNA 0.45 10 38305193 38313066
XM_036937517.1 True 3417 mRNA 0.45 10 38305193 38314622

Neighbor

gene id symbol gene type direction distance location
LOC118937669 NA coding downstream 57510 38242108 ~ 38247683 (-)
nup88 LOC106567676 coding downstream 123579 38159600 ~ 38181614 (-)
LOC110537557 NA coding downstream 201019 38096980 ~ 38104174 (-)
mis12 mis12 coding downstream 242402 38057775 ~ 38062791 (-)
mcama LOC106567672 coding downstream 269713 37970263 ~ 38035480 (-)
LOC110537566 LOC106567683 coding upstream 116807 38431429 ~ 38434087 (-)
LOC110537568 dyrk1a coding upstream 319924 38634546 ~ 38677873 (-)
ttc3 LOC106567687 coding upstream 403907 38718529 ~ 38752891 (-)
ripply3 ripply3 coding upstream 451463 38766085 ~ 38776459 (-)
LOC110537573 LOC106567689 coding upstream 535695 38850317 ~ 38877851 (-)
G1068206 NA non-coding downstream 12279 38292690 ~ 38292914 (-)
G1068203 NA non-coding downstream 14870 38290111 ~ 38290323 (-)
G1068192 NA non-coding downstream 32534 38272364 ~ 38272659 (-)
G1068191 NA non-coding downstream 33455 38271496 ~ 38271738 (-)
G1068189 NA non-coding downstream 36941 38267916 ~ 38268252 (-)
G1068235 NA non-coding upstream 13112 38327734 ~ 38327952 (-)
G1068238 NA non-coding upstream 14698 38329320 ~ 38329539 (-)
G1069285 NA non-coding upstream 541431 38856053 ~ 38910288 (-)
LOC110537576 LOC106567693 non-coding upstream 699971 39014593 ~ 39027908 (-)
LOC110539142 NA other downstream 598822 37672182 ~ 37706371 (-)
LOC110537546 ppm1e other downstream 637939 37603158 ~ 37667366 (-)
LOC110537540 LOC106567738 other downstream 798049 37505206 ~ 37507238 (-)
LOC110537534 LOC106568022 other downstream 1274509 37019987 ~ 37039930 (-)
G1067426 NA other downstream 1367214 36937319 ~ 36937979 (-)
LOC110537579 LOC106603438 other upstream 726898 39041272 ~ 39072520 (-)
G1069456 LOC106567699 other upstream 793678 39108300 ~ 39108962 (-)
fkbp6 LOC106567715 other upstream 1021482 39336054 ~ 39343006 (-)
G1071725 NA other upstream 2724244 41038866 ~ 41039931 (-)
G1073009 NA other upstream 3731241 42045863 ~ 42062632 (-)

Expression


Co-expression Network