LOC110537573 (LOC106567689)


Basic Information

Item Value
gene id LOC110537573
gene name LOC106567689
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 38850317 ~ 38877851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623721.2
GCACCGCCCCTCTCCCTCAGTCCGCATTTGGTTCTGCAAAAGGAATTGACGGGTGCTGTTTGGAAAATCGGTCTGTCTTTAAGGATTACTGAAGCCAAAAAACGAGACTTCTTGAAGACGAAAAGGTTGCTTTATTATTCCTAGCACTGTCTGAGACAACTTCGCATGCTCTCCATTGGTAGCCTAGTTATGTATCCTTATCCTGGCGTTGAAATAAGGAAATGGAGAACTCAGTTGATGTCTTCCCTAGTCGATTAAACAAGGTGGACATTACATGGGAAGGACATATAGTCGTTATTCACTAATCATCATAACTGCAGTGCCCGTGCGTCATCGAAGACACGTTTCTGGTGGTTATGGCAGCAAACACTCTGGAATGAAGTGTGAAAAATAACATTCCAGGCGCAGGCATTAATTTACAGCAGTCAGAGATGAAGGAAAAGTCCAAGAATGCGGCGAAGACGAGACGAGAGAAAGAAAATGGAGAATTTTATGAACTGGCGAAATTACTGCCTTTACCTTCAGCGATCACCTCACAACTGGATAAGGCTTCAATAATTCGGCTGACAACCAGTTATTTGAAGATGAGAGCCGTGTTTCCGGATGGGCTGGGGGAGGCCTGGGGCCAGCCTACCAGAATCAGCCCTCTGGACAACATGGCAAAAGAACTGGGATCCCATCTACTGCAGACTCTGGACGGCTTCGTATTCGTTGTCGCTTCAGACGGCAAAATCATGTACATCTCTGAGACTGCATCAGTCCACCTCGGCCTATCCCAGGTGGAGCTGACGGGCAACAGTATATTTGAGTACATCCACCAATCAGACCATGATGAGATGACGGCCGTGCTCAGCGCCCATCAGCCCCTCCACCATCACTTCCTGCAAGagtaCGAAATTGAGCGCTCTTTTTTCCTGAGGATGAAGTGTGTATTGGCCAAGCGTAATGCAGGACTGACGTGTGGAGGATATAAGGTGATCCACTGCAGTGGGTATTTGAAGATCCGTCAGTACGTGATGGACATGGCGCTGTTTGACTCGTGTTATCAGATCGTGGGTCTGGTGGCGGTGGGCCACTCCCTGCCTCCCAGTGGTATCACAGAGATCAAGCTCCATAGTAACATGTTCATGTTCAGGGCCAGCCTGGACCTCAAGCTCATCTTCCTGGACTCTAGGGTGGCTGAGTTGACGGGACACGAACCCCAGGACCTGATCGAGAAGACACTATACCACCACGTGCACGGCTGTGACGCTTTCCATCTACGCTTCGCTCACCACCTCTTGTTGGTGAAAGGGCAGGTCACCACTAAGTACTACCGTATGTTGTCCAAGCACGGGGGCTGGGTGTGGGTGCAGAGCTACGCCACCATCGTCCACAACAGCCGCTCCTCCAGACCCCACTGCATCGTCAGCGTCAACTATGTCCTCACGGACGTAGAGTATAAAGATATGCAGCTGTCTCAGGAGCAGAGTCGAGCGGCCAAATCCAGCTTGGTCTTTAAGAGTGGCCCGGCCTCCTCTCAGGACCCCCGCAAACAACATAAGGCCAAAGCAGTCAAGATCAAGAGCAAACTCAAAACAGCCCCCTACCCTCAGCCCAACATCACCTACCATCCAGACAAGCTGGACTGCTCCCCCCAAGGAGAGGCCTGGAAGGAGAGCCCCCCGTACACTCTGACCCCCTGCCAGGGGCAGAGCTCTGGCCCCTCTGGAGGCCCAGAAGCTGAAGAGGTCCTGTTTAGCATCAGCGCCCCGTATGGCCTCTCCTTCCCCAACCCATATGGACACCTACCCCACACGGACTCCCAGAGGAGGGTGCGACCCACCCAGGGTTCCTCTTCCGCCTCGCCCTCCCCGGCTTCCCCCAGCCTGGCCGCACGGCAGCTGCTCAGCTCCCTGCAGGATCGAGGGGGCGAGGAGCGCTGGAGCTGTGCCAATGCCAAAACCCATCCTGGTCACGCCCCGAGGCCCTCTGTTGCATCGTGTGCCATCACCACTGCCACTGCAGCAGCGTATTCCGGCCCTACAGCGAGCAGGGGGTACTCCCCCAGCGAACCCCTCCATGGCGTCCTCTCCAGCTGCGCGACCCTGCGCCCTATCAGCAGGTACAAGGAAGAGCCCTACGAGCATCACACACTTGGCCAGAGGAAGACCACAGAGGACCGCCTGCCCTCCCAGTCACAGGCCACAAAAGAGGACAGCAAGCTGCCGTTCAACCGAGACCACCTCCACAAGGTCTCAGAGGGTGGTTGCATAGTAGGGGAGAAGCCTTTGTCCTGTCCTCTGCTGAGTAGCTCTGTGCTGGAGAAGGCGAGCTATAAGCAGTCCGGGTCTCTCCACGGCCTGGGCCAGCCCTTCCCCATGCAGGTGGTGCTGGAGCAGCACAGGAGGCTGTGTATGATGGAGTCCCCCTACAGCCACAGTGCCACTGGCCCCTTGGAGCACACGGACAGCAATTGGGAGCGGAGGACCCCCAAGCTGCTGGAGCCTGAGGcgggggagaggaggatgtggatgGGGGTTGGAGTTGAAGTTGGGGTTGGGATGGGGGTGGGAGTTGAAGTTGGAGTTGGGATGGGGGTGGGAGTTGGGGCAGGCCTGCCGGCCCAGGCTCCGTACATGTCTTTGAATCTCCACCACGTCTTGGCCAAACACAGCTCCTTCCAGGCCCCGCCCTACGCTGCCCTCGGCCATTTGTCGGACAGCTACGGTTACCGTGGTGATGAAATGGGTTCTTATGGCTACAAGAGCCAAAGCCCCGCCTCTGGCTCCTCCCCTGAGACCCACAGGGAGATCCCTCATTACATCGGCACGTCCGTCATCATCACCAACGAGAGGTGACACGGCCTGGGATTGAAGGTCAAGAAGGGACAGACACCCTTAGACTTCAGCCTTTTTGGTCAGAAACAGACCATGACCAAAAGCTGTATCAGTGACTATGTTACTGCGTCAGACATAAGTCGAGTCACTTTCTGGGGACCCCCATTTCTGTTTTTCCCGATGCTTTCTACACAGATAAACCAACGTCAGACTCCTGTAAGGAGCAGCCAGGAATTTCAGGTTTCTTGAATACATTATATTTTTGGCATACAGTTTAGCCAATAGCATATGTAATGCATTGCCACATTCTAGATCAAAGCCATTTCTTTTGATAAGTCCTCAATCACCTTTGAGCCATACAGTACATCATTTGAGGTACAAATTGCCTGTGAAGAATACACCCCTCTAATGTTGTAACTCATAGAGGTACCTATCCTACAGACCTGAACAAGAAGAGACTATAGAATGTAGCATGAGTTCAACCCAATTCGCAAGCTAGTTCAAGTGCAAACTGTTTCCAATGCGCGTATAAATTATGCCAACAGAAAAATTACAGTTGCAAAAGTATTGAACGTGGACAATGTCTCGCACACAGTAATGAGGGAAAATATCCTTCATCCTCTTTTGAAGTTGGAATTAATTTGGTATATTCTACCCATGGCAGAGATTGGAAACgtaatgtgtttatttattattgtGCAACACAAAGCAGCTTGCTTATTTATGAAGGAAACTAGGGTCTAACAAgtataatgaaaaaaatatatactgcaTTGGgggaaatgaaatgaaataaaacaaGGTAGTTTGCTTTCATTCTGAATAAACAATTCAAATGAAA
>XM_036937536.1
GCACCGCCCCTCTCCCTCAGTCCGCATTTGGTTCTGCAAAAGGAATTGACGGGTGCTGTTTGGAAAATCGGTCTGTCTTTAAGGATTACTGAAGCCAAAAAACGAGACTTCTTGAAGACGAAAAGGTTGCTTTATTATTCCTAGCACTGTCTGAGACAACTTCGCATGCTCTCCATTGGTAGCCTAGTTATGTATCCTTATCCTGGCGTTGAAATAAGGAAATGGAGAACTCAGTTGATGTCTTCCCTAGTCGATTAAACAAGGTGGACATTACATGGGAAGGACATATAGTCGTTATTCACTAATCATCATAACTGCAGTGCCCGTGCGTCATCGAAGACACGTTTCTGGTGGTTATGGCAGCAAACACTCTGGAATGAAGTGTGAAAAATAACATTCCAGGCGCAGATAAAAAGGAAAAATCTACGTTTTGAGGGCGAAGAGGAAGGTGTTCTGTGTTGCAACAGGCATTAATTTACAGCAGTCAGAGATGAAGGAAAAGTCCAAGAATGCGGCGAAGACGAGACGAGAGAAAGAAAATGGAGAATTTTATGAACTGGCGAAATTACTGCCTTTACCTTCAGCGATCACCTCACAACTGGATAAGGCTTCAATAATTCGGCTGACAACCAGTTATTTGAAGATGAGAGCCGTGTTTCCGGATGGGCTGGGGGAGGCCTGGGGCCAGCCTACCAGAATCAGCCCTCTGGACAACATGGCAAAAGAACTGGGATCCCATCTACTGCAGACTCTGGACGGCTTCGTATTCGTTGTCGCTTCAGACGGCAAAATCATGTACATCTCTGAGACTGCATCAGTCCACCTCGGCCTATCCCAGGTGGAGCTGACGGGCAACAGTATATTTGAGTACATCCACCAATCAGACCATGATGAGATGACGGCCGTGCTCAGCGCCCATCAGCCCCTCCACCATCACTTCCTGCAAGagtaCGAAATTGAGCGCTCTTTTTTCCTGAGGATGAAGTGTGTATTGGCCAAGCGTAATGCAGGACTGACGTGTGGAGGATATAAGGTGATCCACTGCAGTGGGTATTTGAAGATCCGTCAGTACGTGATGGACATGGCGCTGTTTGACTCGTGTTATCAGATCGTGGGTCTGGTGGCGGTGGGCCACTCCCTGCCTCCCAGTGGTATCACAGAGATCAAGCTCCATAGTAACATGTTCATGTTCAGGGCCAGCCTGGACCTCAAGCTCATCTTCCTGGACTCTAGGGTGGCTGAGTTGACGGGACACGAACCCCAGGACCTGATCGAGAAGACACTATACCACCACGTGCACGGCTGTGACGCTTTCCATCTACGCTTCGCTCACCACCTCTTGTTGGTGAAAGGGCAGGTCACCACTAAGTACTACCGTATGTTGTCCAAGCACGGGGGCTGGGTGTGGGTGCAGAGCTACGCCACCATCGTCCACAACAGCCGCTCCTCCAGACCCCACTGCATCGTCAGCGTCAACTATGTCCTCACGGACGTAGAGTATAAAGATATGCAGCTGTCTCAGGAGCAGAGTCGAGCGGCCAAATCCAGCTTGGTCTTTAAGAGTGGCCCGGCCTCCTCTCAGGACCCCCGCAAACAACATAAGGCCAAAGCAGTCAAGATCAAGAGCAAACTCAAAACAGCCCCCTACCCTCAGCCCAACATCACCTACCATCCAGACAAGCTGGACTGCTCCCCCCAAGGAGAGGCCTGGAAGGAGAGCCCCCCGTACACTCTGACCCCCTGCCAGGGGCAGAGCTCTGGCCCCTCTGGAGGCCCAGAAGCTGAAGAGGTCCTGTTTAGCATCAGCGCCCCGTATGGCCTCTCCTTCCCCAACCCATATGGACACCTACCCCACACGGACTCCCAGAGGAGGGTGCGACCCACCCAGGGTTCCTCTTCCGCCTCGCCCTCCCCGGCTTCCCCCAGCCTGGCCGCACGGCAGCTGCTCAGCTCCCTGCAGGATCGAGGGGGCGAGGAGCGCTGGAGCTGTGCCAATGCCAAAACCCATCCTGGTCACGCCCCGAGGCCCTCTGTTGCATCGTGTGCCATCACCACTGCCACTGCAGCAGCGTATTCCGGCCCTACAGCGAGCAGGGGGTACTCCCCCAGCGAACCCCTCCATGGCGTCCTCTCCAGCTGCGCGACCCTGCGCCCTATCAGCAGGTACAAGGAAGAGCCCTACGAGCATCACACACTTGGCCAGAGGAAGACCACAGAGGACCGCCTGCCCTCCCAGTCACAGGCCACAAAAGAGGACAGCAAGCTGCCGTTCAACCGAGACCACCTCCACAAGGTCTCAGAGGGTGGTTGCATAGTAGGGGAGAAGCCTTTGTCCTGTCCTCTGCTGAGTAGCTCTGTGCTGGAGAAGGCGAGCTATAAGCAGTCCGGGTCTCTCCACGGCCTGGGCCAGCCCTTCCCCATGCAGGTGGTGCTGGAGCAGCACAGGAGGCTGTGTATGATGGAGTCCCCCTACAGCCACAGTGCCACTGGCCCCTTGGAGCACACGGACAGCAATTGGGAGCGGAGGACCCCCAAGCTGCTGGAGCCTGAGGcgggggagaggaggatgtggatgGGGGTTGGAGTTGAAGTTGGGGTTGGGATGGGGGTGGGAGTTGAAGTTGGAGTTGGGATGGGGGTGGGAGTTGGGGCAGGCCTGCCGGCCCAGGCTCCGTACATGTCTTTGAATCTCCACCACGTCTTGGCCAAACACAGCTCCTTCCAGGCCCCGCCCTACGCTGCCCTCGGCCATTTGTCGGACAGCTACGGTTACCGTGGTGATGAAATGGGTTCTTATGGCTACAAGAGCCAAAGCCCCGCCTCTGGCTCCTCCCCTGAGACCCACAGGGAGATCCCTCATTACATCGGCACGTCCGTCATCATCACCAACGAGAGGTGACACGGCCTGGGATTGAAGGTCAAGAAGGGACAGACACCCTTAGACTTCAGCCTTTTTGGTCAGAAACAGACCATGACCAAAAGCTGTATCAGTGACTATGTTACTGCGTCAGACATAAGTCGAGTCACTTTCTGGGGACCCCCATTTCTGTTTTTCCCGATGCTTTCTACACAGATAAACCAACGTCAGACTCCTGTAAGGAGCAGCCAGGAATTTCAGGTTTCTTGAATACATTATATTTTTGGCATACAGTTTAGCCAATAGCATATGTAATGCATTGCCACATTCTAGATCAAAGCCATTTCTTTTGATAAGTCCTCAATCACCTTTGAGCCATACAGTACATCATTTGAGGTACAAATTGCCTGTGAAGAATACACCCCTCTAATGTTGTAACTCATAGAGGTACCTATCCTACAGACCTGAACAAGAAGAGACTATAGAATGTAGCATGAGTTCAACCCAATTCGCAAGCTAGTTCAAGTGCAAACTGTTTCCAATGCGCGTATAAATTATGCCAACAGAAAAATTACAGTTGCAAAAGTATTGAACGTGGACAATGTCTCGCACACAGTAATGAGGGAAAATATCCTTCATCCTCTTTTGAAGTTGGAATTAATTTGGTATATTCTACCCATGGCAGAGATTGGAAACgtaatgtgtttatttattattgtGCAACACAAAGCAGCTTGCTTATTTATGAAGGAAACTAGGGTCTAACAAgtataatgaaaaaaatatatactgcaTTGGgggaaatgaaatgaaataaaacaaGGTAGTTTGCTTTCATTCTGAATAAACAATTCAAATGAAA

Function

NR:

description
single-minded homolog 2-like

GO: NA

KEGG:

id description
K09100 SIM; single-minded

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623721.2 False 3660 mRNA 0.52 12 38850317 38877851
XM_036937536.1 True 3719 mRNA 0.52 12 38850317 38877851

Neighbor

gene id symbol gene type direction distance location
ripply3 ripply3 coding downstream 82761 38766085 ~ 38776459 (-)
ttc3 LOC106567687 coding downstream 97426 38718529 ~ 38752891 (-)
LOC110537568 dyrk1a coding downstream 172444 38634546 ~ 38677873 (-)
LOC110537566 LOC106567683 coding downstream 416230 38431429 ~ 38434087 (-)
LOC110537564 LOC106567681 coding downstream 535695 38305193 ~ 38314622 (-)
LOC110537575 LOC106567692 coding upstream 114945 38992796 ~ 38996885 (-)
LOC110537578 LOC106567694 coding upstream 119531 38997382 ~ 39006119 (-)
LOC110537576 LOC106567693 coding upstream 137676 39014593 ~ 39027908 (-)
LOC110537579 LOC106603438 coding upstream 163421 39041272 ~ 39072520 (-)
LOC110537580 LOC106567695 coding upstream 195397 39073248 ~ 39077590 (-)
G1068238 NA non-coding downstream 520778 38329320 ~ 38329539 (-)
G1068235 NA non-coding downstream 522365 38327734 ~ 38327952 (-)
G1068206 NA non-coding downstream 557403 38292690 ~ 38292914 (-)
G1068203 NA non-coding downstream 559994 38290111 ~ 38290323 (-)
G1069455 LOC106567699 non-coding upstream 229213 39107064 ~ 39108139 (-)
G1069457 NA non-coding upstream 231807 39109658 ~ 39151990 (-)
G1069462 NA non-coding upstream 235981 39113832 ~ 39114452 (-)
G1069480 NA non-coding upstream 246379 39124230 ~ 39185219 (-)
LOC110539142 NA other downstream 1143946 37672182 ~ 37706371 (-)
LOC110537546 ppm1e other downstream 1183063 37603158 ~ 37667366 (-)
LOC110537540 LOC106567738 other downstream 1343173 37505206 ~ 37507238 (-)
LOC110537534 LOC106568022 other downstream 1819633 37019987 ~ 37039930 (-)
G1067426 NA other downstream 1912338 36937319 ~ 36937979 (-)
G1069456 LOC106567699 other upstream 230449 39108300 ~ 39108962 (-)
fkbp6 LOC106567715 other upstream 458253 39336054 ~ 39343006 (-)
G1071725 NA other upstream 2161015 41038866 ~ 41039931 (-)
G1073009 NA other upstream 3168012 42045863 ~ 42062632 (-)

Expression


Co-expression Network