LOC110537578 (LOC106567694)


Basic Information

Item Value
gene id LOC110537578
gene name LOC106567694
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 38997382 ~ 39006119 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623727.2
AAGGTTTACGTTAGGACTCAAAGTTCTCTGCTGCTGACTTCAGTAACTGATTTTTTTAATGCATGTGTAAAGCAAATTCGATTAGTCCTTATCATACAGTTAATAACGACAGCAATATTGTTACTATTTAAACACAACTATATTGCTAGCTGAACAAAGCTGCAGCCACAGCAAGTAGCTAAAGAGCCTCTTGTGTCAAAGGAGTTTGCTAGCTAGCGTGCTAGCTGTGTTATTAGAATAGCTAGTGCTAACGTGGCACAAACTCGGCGAAGATGGAGTTTGCAGCTCTTTTTGCCTTGACCTTATTAATAGGAATGCTAATAATTTTGGTCGCCGTCGCAGTGGGAAAGCAGAAAGGAGAAATAAGTAAACAACTAGAGCAGAATGAAGAAGACTCAGTTGCAGAGAGAAATGCAGTGAAGGCTCCCACTGCCAAGAAACAGAAACAACAACAGCGTCCTCGCAAGGAGAAAGCCCAGCAGCACACCTTCAGCCACCCTCTTCTAGCATCATCCTTGAAGagtcACAGTGGAAATGTGACGTCCCTGGACTTCAGCAGCAACGGAAAGTACCTAGCCACCTGTGCTGACGACCGCACTGTCAGGATATGGAGCACCAAGGAATTCCTGGACAGAGACCACAAATGTCTGCGGGCCAACTTAGAGCTGGACCATGCCACACTGGTCCGTTTCAGCCCTGATTCAAGGGCCTTCATTACTTGGCTGGCTAACGGAGATACCATTCGCATCTTCAAGATGACCAAGAAGGATGATGGGAGCTTCACTTTCAAAGCTGCCCCTGAAGACTTCCCAAAGAAACACAAGGCCAATGTCATCAATATCGGCATCGCAGAGACTGGCAAGTTCATCATGAGTGCCTCCACCGACACCAACATCCTCATCTGGGACCTGAAAGGAGAGGTACTGGCTTCTATCATCACCAACCAGATGACCAACTCCTACGCTGCCATTTCACCCTGTGGAAGGTTTGTGGCTTCCTGTGGCTTCACTCCTGACGTGAAGGTATGGGAGGTGTGCTTTGGGAAGGGTGGTGACTTCAAAGAGGTGAGCCGCGCCTTCGACCTGAAGGGCCATTCAGCAGGGGTCCACTCCTTTGCCTTCTCTAACGACTCACGCAGAATGGCCACCGTCTCCAAGGACGGCACTTGGCGGCTGTGGGACACAGATGTGGAGTACAAGAAGCAACAAGACCCGTACCTCCTGAAGTCGGTGCCTTGCCAGTCGTCGGAAGGCAGCCGGGTGGCCCTGTCGCCAGACGCGCGCGTGGTGGCTATCTCCAACGGCTGCAGCGTGGCCATGTACAGCACATCCACTGGTCAGCTGGAGGAGGAGTTCCACGGAGTCCACAGCGAGGAGATCACCGAGCTGAGGTTTGACATCAACAGCCGCTACCTGGTGTGCAGCGGGGACCGGGCGGTACGTGTGTTCCACAATGCGCCAGGTTACCGTGCAGCCATCCAGGACATGCAAGCCATGCTAAAGAACGCCCAGAACGAGGGTATGAAACAAAGGCTGCAGCAGCAGATACAGGAGGTGCAGAGCACGCTAGACACAGTGCTCACGGCACCCAAGGACTAAAGAACTAAAGACCCCCCGGGCTGGCTGTGTAGAtccctctttctatctttctcacACTGCCTCTTCACAGAAGGGCCTGCAATTCGACTCCTGTCAGGGATGTGGCATTTACATGCTGGTTTTAATAAATCATGTGTTTCTACAGAAATATGGCTCTATTTTGTTTTTTGCATGCTCTGCCTGCCTCCAAAAATCAAGAATACTATTTGTTACCTCTACTTGGACCAGTAATACTACTATAGGAGAATTTGCTTTGACGCTGGTGGTCTTTGTAtctttttaaaaaattaaataaaaatgttgtaCCCCT

Function

NR:

description
transducin beta-like protein 2

GO: NA

KEGG:

id description
K23325 TBL2; transducin beta-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623727.2 True 1908 mRNA 0.50 7 38997382 39006119

Neighbor

gene id symbol gene type direction distance location
LOC110537575 LOC106567692 coding downstream 497 38992796 ~ 38996885 (-)
LOC110537573 LOC106567689 coding downstream 119531 38850317 ~ 38877851 (-)
ripply3 ripply3 coding downstream 229826 38766085 ~ 38776459 (-)
ttc3 LOC106567687 coding downstream 244491 38718529 ~ 38752891 (-)
LOC110537568 dyrk1a coding downstream 319509 38634546 ~ 38677873 (-)
LOC110537576 LOC106567693 coding upstream 9408 39014593 ~ 39027908 (-)
LOC110537579 LOC106603438 coding upstream 35153 39041272 ~ 39072520 (-)
LOC110537580 LOC106567695 coding upstream 67129 39073248 ~ 39077590 (-)
LOC110537583 LOC106567696 coding upstream 71521 39077640 ~ 39085899 (-)
LOC110537596 NA coding upstream 234538 39240657 ~ 39245631 (-)
G1069285 NA non-coding downstream 87094 38856053 ~ 38910288 (-)
G1068238 NA non-coding downstream 667843 38329320 ~ 38329539 (-)
G1068235 NA non-coding downstream 669430 38327734 ~ 38327952 (-)
G1068206 NA non-coding downstream 704468 38292690 ~ 38292914 (-)
G1069455 LOC106567699 non-coding upstream 100945 39107064 ~ 39108139 (-)
G1069457 NA non-coding upstream 103539 39109658 ~ 39151990 (-)
G1069462 NA non-coding upstream 107713 39113832 ~ 39114452 (-)
G1069480 NA non-coding upstream 118111 39124230 ~ 39185219 (-)
LOC110539142 NA other downstream 1291011 37672182 ~ 37706371 (-)
LOC110537546 ppm1e other downstream 1330128 37603158 ~ 37667366 (-)
LOC110537540 LOC106567738 other downstream 1490238 37505206 ~ 37507238 (-)
LOC110537534 LOC106568022 other downstream 1966698 37019987 ~ 37039930 (-)
G1067426 NA other downstream 2059403 36937319 ~ 36937979 (-)
G1069456 LOC106567699 other upstream 102181 39108300 ~ 39108962 (-)
fkbp6 LOC106567715 other upstream 329985 39336054 ~ 39343006 (-)
G1071725 NA other upstream 2032747 41038866 ~ 41039931 (-)
G1073009 NA other upstream 3039744 42045863 ~ 42062632 (-)

Expression


Co-expression Network