Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110538893 |
| gene name | rfc2 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 39362997 ~ 39371358 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| rfc2 | Predicted to enable ATP binding activity and DNA binding activity. Predicted to contribute to DNA clamp loader activity. Predicted to be involved in DNA repair and DNA-dependent DNA replication. Predicted to act upstream of or within DNA replication. Predicted to be part of DNA replication factor C complex. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; central nervous system; digestive system; eye; and immature eye. Orthologous to human RFC2 (replication factor C subunit 2). |
| description |
|---|
| PREDICTED: replication factor C subunit 2-like |
| id | name | namespace |
|---|---|---|
| GO:0000166 | nucleotide binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC110538893 | True | 1633 | mRNA | 0.45 | 10 | 39362997 | 39371358 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118937671 | NA | coding | upstream | 971 | 39358964 ~ 39362026 (+) |
| mks1 | mks1 | coding | upstream | 80543 | 39266156 ~ 39282454 (+) |
| LOC110537593 | LOC106567711 | coding | upstream | 88980 | 39216300 ~ 39274017 (+) |
| LOC118937670 | NA | coding | upstream | 179413 | 39182142 ~ 39183584 (+) |
| LOC110537591 | NA | coding | upstream | 197362 | 39163404 ~ 39165635 (+) |
| LOC110537603 | LOC106567719 | coding | downstream | 9546 | 39380904 ~ 39401720 (+) |
| htr3b | LOC106567726 | coding | downstream | 174689 | 39546047 ~ 39555571 (+) |
| htr3a | LOC106567725 | coding | downstream | 185331 | 39556689 ~ 39563770 (+) |
| LOC118937980 | NA | coding | downstream | 803993 | 40175351 ~ 40175541 (+) |
| cadm1a | LOC106567730 | coding | downstream | 1139800 | 40511158 ~ 40938098 (+) |
| G1068770 | NA | non-coding | upstream | 23407 | 39327082 ~ 39339590 (+) |
| G1068686 | NA | non-coding | upstream | 105007 | 39202307 ~ 39257990 (+) |
| G1068797 | NA | non-coding | downstream | 43496 | 39414854 ~ 39415056 (+) |
| G1068799 | NA | non-coding | downstream | 46069 | 39417427 ~ 39417633 (+) |
| G1068804 | NA | non-coding | downstream | 51602 | 39422960 ~ 39423161 (+) |
| G1068853 | NA | non-coding | downstream | 132865 | 39504223 ~ 39504756 (+) |
| G1068854 | NA | non-coding | downstream | 133495 | 39504853 ~ 39505782 (+) |
| styxl1 | styxl1 | other | upstream | 273054 | 39077007 ~ 39090045 (+) |
| prkrip1 | LOC106567678 | other | upstream | 1121624 | 38231737 ~ 38241376 (+) |
| G1067321 | LOC106567676 | other | upstream | 1194049 | 38168337 ~ 38168948 (+) |
| G1067221 | NA | other | upstream | 1423721 | 37938832 ~ 37939276 (+) |
| G1067156 | LOC100380745 | other | upstream | 1497522 | 37854888 ~ 37865475 (+) |
| G1070479 | NA | other | downstream | 921094 | 40292452 ~ 40292734 (+) |
| G1071144 | NA | other | downstream | 1743220 | 41114578 ~ 41114957 (+) |
| G1071159 | NA | other | downstream | 1766078 | 41137436 ~ 41137868 (+) |
| G1072789 | NA | other | downstream | 2825692 | 42197050 ~ 42216163 (+) |
| G1074265 | NA | other | downstream | 4473809 | 43845167 ~ 43845968 (+) |
