si:dkey-183i3.5 (LOC106567720)


Basic Information

Item Value
gene id si:dkey-183i3.5
gene name LOC106567720
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 39398996 ~ 39405263 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937555.1
GCTTGGACACCCCAGCTttgaggctgctgctgctgctaaaaTGTCTGAGACGAACCTGAGAATCAGTGGGGGGGCGGTGAGGTTTGGGGCGACCTATGGGGGCAACAGGCTCTTCTCTGGGGGCAGGAGCGGTGGAGGTGGCGGCGGAGGGGCCGGAATGGCCCTCTCCAGGTCTTTTGGAATGGGCGGGGGTGGAAGAGCGGGACTCGgtatgagaggagggatggggctAGGCATGGGGATGGGAATGGGTGGAGGCCTTGGGATGGGAGGAGGCctggggatgggaatggggggaGGCCTGGGGATGGGGGGAGGCCTGGGGATGGGGCTAGGAATGGGggCCGGCGGTGGAGGGGTCAGTGCAGCAGGGTTCAGGGCTGGCGTGGCCCCACTCAGGGCTCGCTTGGGCGGCCGGGTCTTCAAGATCGGAGGCTATGGCTTCAACCCGTCTTTCCTGAGCTCCACCACTGCAGTGGGTGGTGACGTGGGTGTCAGCCCTGTGCCAAGCATCGACCCCTCGCTACCCTCGCTCGACACAGTCCAGGTGACCCGCCTAAAGGAGAAGGAGGAGCTGCAGGTCCTCAATGACAAGTTTGCCACCTTCATTGACAAGGCTCGCTCTCTGGAGCAGACCAACGCTGTGTTGAGGGCCAAGATCGCCATGTTCACCAACCCGGACCAGAGCGGCCCTGCCAACACCTCCATCCTGCTCACCTCTGCCATCGGTACCTACAAGATCCAGATTGATGGCCTGTCTGCCACCAAGGAGGCCATTGTTGCTGAGATTGAGCACTACAAGAGCATCATCGAAGATGTCCAGAGCAGGTTTGAGGAGGAGACCGTCCAAACCAAGTCATTAGAGATGGACTGGACCACATTAAAAGAGGAGGTAGACAATCTCTACATGAGCATTTTTGAGCTTCAAACCAACATTGGCGGACTGGAAGATCAGATTGGTCTCTCAAAGCAGGTGTATGATGCTAAAGTGAAGGAGGTGAGGAACATCATGACGGGCAGTGTGAGGTCAGCCTTCTCCATCTCGGTGGACAACGCAGCCCAAGCCCAGGACCTGACCTCTGCCCTGTCGGACGTCAAGTCCCACTATGAAGCCCTGGCCCAGCGCAGCAAGCAGGACGCCCTTGTTTCTGTGCAGGACAGTCTCTCCATGATGTCCATGACATCCCAGCCCAGTACCCAGACTCTGACCCAAACCAAAGAGGAGCTGCGCATGTACAAACTGCAGATCGACTCAGTACAGAGGGAGATCGACAGACTCAAGACCCTGAACATCCAGATGGAATCTCAGGTGGATGAGGCAGAGTCCCACTCCAGCTCCCACACAGAGACCTATCAGGAGCAGGTGCTGACCCTCAAGTTGCAGCTGGATGACATCAGAAAGCAAATAACACACTATGGTCAAGAGTACCAGGAACTCCTGGCCAGTAAAATGTCTCTAGATGTTGAGATCACTGCATACAAGAAGCTTCTGGACAGCGAGGAGAGCAGACTGAGGTCAGGAGGCGGCGTGACCGTGCACATGTCTAAGACTGCcattggaggagggggaggtggggctGGCCTGGCCCTGGGAGGAGGAGGcggcggcggcggcggcggcatgggtctgggtctgggaggaggaggaggcggcggCGGCATGggtctgggaggaggaggaggcggcggCGGCATGGGTCTGGGCGGTGGCTACAGAATAGGCGGAGGCCTAGGAGGAGGCTTTGGAGGGGGTCTGGGCAGTGGCTTTGGAGGTTTTGGAGGAGGTCTGGGgttaggaggaggtggagggtcttTCGGAGGCGGGGGATCCTTCGGAGGCGGGGGGTCCTTCGGAGGCGGGAGCAGCTACATGTCCTCCAGCCTGAGCAGCAGTGGACTCTCTTCAACAGTGTACTGAGGACAAACAGGACCGACCAGAGAATCTCCATCTGCCTACATTGAGATGGAACCCTGTTTTAGCAGAATTACTAAGAAAGATCAACAGTCTCAGATTCTGTTGTGTGACTTGCCATAATGTAACATGTTTAATATCAATAAAAGCAGTGTTATTTCA

Function

NR:

description
thread biopolymer filament subunit alpha-like

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937555.1 True 2074 mRNA 0.58 11 39398996 39405263

Neighbor

gene id symbol gene type direction distance location
si:dkey-183i3.6 LOC106567717 coding downstream 21947 39371194 ~ 39377049 (-)
zgc:171740 LOC106567716 coding downstream 40144 39343615 ~ 39358852 (-)
fkbp6 LOC106567715 coding downstream 55990 39336054 ~ 39343006 (-)
LOC110537598 LOC106567714 coding downstream 86873 39309216 ~ 39312123 (-)
LOC110537596 NA coding downstream 153365 39240657 ~ 39245631 (-)
si:dkey-183i3.9 yk005 coding upstream 1310 39406573 ~ 39409769 (-)
ddx10 LOC106567721 coding upstream 19859 39425122 ~ 39494021 (-)
zw10 LOC106567722 coding upstream 88933 39494196 ~ 39502812 (-)
LOC110537606 LOC106567723 coding upstream 100660 39505923 ~ 39508142 (-)
LOC110537607 LOC100194713 coding upstream 113334 39518597 ~ 39546033 (-)
G1069600 LOC106567719 non-coding downstream 2662 39395581 ~ 39396334 (-)
G1069544 NA non-coding downstream 103137 39295625 ~ 39295859 (-)
G1069543 NA non-coding downstream 105090 39293444 ~ 39293906 (-)
G1069540 NA non-coding downstream 110817 39287953 ~ 39288179 (-)
G1069533 NA non-coding downstream 112744 39281658 ~ 39286252 (-)
G1069606 NA non-coding upstream 10453 39415716 ~ 39416033 (-)
G1069610 NA non-coding upstream 13844 39419107 ~ 39419344 (-)
G1069635 NA non-coding upstream 98862 39504125 ~ 39504676 (-)
G1069650 NA non-coding upstream 110399 39515662 ~ 39515872 (-)
G1069652 NA non-coding upstream 112060 39517323 ~ 39517552 (-)
G1069456 LOC106567699 other downstream 290034 39108300 ~ 39108962 (-)
LOC110537579 LOC106603438 other downstream 326524 39041272 ~ 39072520 (-)
LOC110539142 NA other downstream 1692625 37672182 ~ 37706371 (-)
LOC110537546 ppm1e other downstream 1731742 37603158 ~ 37667366 (-)
G1071725 NA other upstream 1633603 41038866 ~ 41039931 (-)
G1073009 NA other upstream 2640600 42045863 ~ 42062632 (-)
G1074731 NA other upstream 3298740 42704003 ~ 42713923 (-)
G1075335 NA other upstream 4158522 43563785 ~ 43564240 (-)
G1075399 NA other upstream 4255296 43660559 ~ 43660837 (-)

Expression


Co-expression Network