ddx10 (LOC106567721)


Basic Information

Item Value
gene id ddx10
gene name LOC106567721
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 39425122 ~ 39494021 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937556.1
TGTGGAAATTTCCGGGTTGCGTTGACGTCATATTTATGCGTCTACATGCTTGTGCGCCAGCGTTTACATGCGGTTTAGCTGAAtcaccaaatatttatttttaaaacattctTGAATTGGTTTATTTAACCATGGAGAAGGGCAAACGACCAAACGTGTCCCtcaataaaaaaacaagaaagaaaAACCCAACCGACACTATTGATCCGGTGAAGAACTTCGAGCGATGGAAGAAGAAATACAACAAGACGAAAACACGAGTTAAACAAGAGAAAAGACAGAAAAGGAGACCTGAATGGCAGGTGGAGAAAGAAGCTATTCAAAGGCTTGTCAACAAATATAACGAGATAAATGCCAAGGATGCTGAGAGGTTTTCAGATTTCCCCATCTCAAAGAATACCCTGCGAGGTCTGATGGAAGCACAGTATCGTCAGCCcacagaaatacagagacagaccaTTGGCTTTGCGTTGCAAGGTAAAGATGTTCTGGGTGCTGCAAAGACGGGCTCTGGAAAAACACTGGCCTTTCTCATTCCTGTTTTGGAGTGTTTGTATCGTCAGCAGTGGACAGCCATGGATGGCCTGGGGGCCCTCATCATCTCCCCGACACGAGAGCTGGCCTATCAGACCTTCGAAGTACTCCGTAAAGTGGGCAAGAACCACGAGTTCTCTGCCGGCCTCATCATTGGCGGAAAGGACCTGAAAAATGAGTCTGAGAAGATCCACCGCACcaacatcatcatctgcacgcCAGGACGCCTGCTCCAGCACATGGACGAGACTGCTGCGTTCCATGCCTCCGATCTGCACATGCTAGTTTTGGATGAGGCGGATCGTATCCTGGACATGGGTTTTGCCGACACTATCAACGCCATAGTGGAGAACCTCCCCAAGACCCGTCAGACACTGCTGTTCTCAGCCACACAGACCAAGTCAGTGAAAGACCTGGCCCGCCTCAGCCTCAAAGACCCAGAGTACGTCTGGGTGCACGAGAAGGCCAAGTTCAGCACGCCGGCCACGCTGGAGCAGAACTACGTGGTGTGTGAGCTGCACCAGAAAGTCAACATGCTCTTCTCCTTCATCAGGAGCCACCTGCAGAAGAAAGTCATTGTCTTCTTTGCCTGTTGCAAAGAGGTGCAATACCTGTTCCGGGTGTTCTGTCGGCTGCGTCCGGGCATGCCCATCCTGGCCCTGCATGGGAAGCAACAGCAGATGAAGagggtggaggtctacaatgacTTCATCAAGAAGAAGAATGCTGTGCTCTTCGCCACAGACATTGCAGCCAGAGGCCTAGACTTCCCTGCCGTGAACTGGGTGTTGCAGTTTGACTGTCCAGAGGATGCCAACACATACATCCACAGAGTGGGACGAACCGCCAGGtataaggagggaggagaggctcTGCTTGTCCTGCTGCCCTCAGAAGAGAAGGACATGGTATCTCAGCTCCAGGAGAAGAAAGTCCCCATCAACAGAATTCAGGTGAACCCAGAGAAGCTGACGAGCGTGCAGCAGAAGCTGGAGGCTTTCCTGGCCCAGGAGAAGGAACAGAAGGAGCGAGCTCAGAGGTGTTTCGTCTCCTACCTGCGCTCCGTCTACCTCATGAAAAACAAAGACGTCTTTGATGTGTTCCAGCTCAAGCTCCAGGAGTATGCAGCTTCTCTGGGCCTCGCTGTTGCTCCAAGGGTGCGTTTTCTCAACAAAGTCCAGAAGCAGAGAGCAGACCCTGGACAGAGTGGCGGGCTGGGAGATGTGGCCCCgcatgaggaggagaaggaactAAAGAGCTTCAAGGCTCAGCTCAGAGGAGACGGGCTCAAGTCCGAAGCTCAAGAATCCCAAAGCTCAGATGAGgaagatgatgaggaggaggatgaggaaaagGTACAGCCCGGTCCTAAGGGTCTCATCTTCGGGGAAGATGAAACCGAGGAGGATGAAGATATGAGGGACTTGGACCTGCTCACAGTGAAGAGAAAAGATGTCTTCAGTCTGGAGGAAGTTGACCAGGATGATGAGGAAACTGACAGTAACACCATTAAGAAAACAGAAAAAGAGACCAAGTTCAAAGAGGCCAAGAAAGTCCTGAAGAGAAACTTCCAAGTCAACACCAAATTAGTCTTCACTGAAGAGGGACAGATGGTGCAGCAGTGGCCCCCGCTCCAGAGGACGGCCGTGCCAGccacagagggggaggaggatgacTGCACGTCGGGCATCAATGtggaggaggccagagagaggCTGCGCCGAGAGGACCAGGAGTTTGACAAGCTGGAGTACAGGCGTAAAGTCAAAGAGAAACACAGGGAGAAGAGACTGAAGGAAAACGCTGCCAGAAGAGAAGCCAGCAAGCAGTACGCTGAGGAGCAGAAGTCCggtgaggaggatgaagaggaggtggTAGCGTACCTGGGCGGTTCTGATGGAGAAGAGTTTGACCCCAGCACACTGCCCGACCCGGACAAACTACACTACGACTCAGAGGAAGAAGATGACCAGATCAGCCCTGCTGCTGGGACGAGGAAGCGCATCCACAGTGACCACATCGATGACTcgggtgaagaagaagaagaagaagaagaagaagaagaagaagaggaggaggcggCAGCGGGGAGCAGGAAGAGACCCAGGCAACAAGCAACCGCCAAGCCCCTGGACACCGGCCTCTCTCTGGCCGAGGACGAAGCACTGGTCCTGCATCTGCTGGGGAACCGGAGCTAGGGCTAACAAATTACCCAACACTGTCTTATGGCGGATCCTCTCCAATGTCTTGTCATAATTTGGGGATGTTCCCCAATATTTTGGGAACATAAAACAAATAAAGTGTATGTTAGTTACAAGTGACCTGTTATTGTTTTACTGTGATTACGTGTGCTTGTTTGGTACATAAAATGTAATTCAACCAGAAAAACAAGTGCTTTAGCTAGTACCCATCCACATactatttatttgttttttttaaatgtcctcaAGTGTTTATTTGAAATACAGTAATTTGCTCTA
>XM_036937557.1
TGTGGAAATTTCCGGGTTGCGTTGACGTCATATTTATGCGTCTACATGCTTGTGCGCCAGCGTTTACATGCGGTTTAGCTGAAtcaccaaatatttatttttaaaacattctTGAATTGGTTTATTTAACCATGGAGAAGGGCAAACGACCAAACGTGTCCCtcaataaaaaaacaagaaagaaaAACCCAACCGACACTATTGATCCGGTGAAGAACTTCGAGCGATGGAAGAAGAAATACAACAAGACGAAAACACGAGTTAAACAAGAGAAAAGACAGAAAAGGAGACCTGAATGGCAGGTGGAGAAAGAAGCTATTCAAAGGCTTGTCAACAAATATAACGAGATAAATGCCAAGGATGCTGAGAGGTTTTCAGATTTCCCCATCTCAAAGAATACCCTGCGAGGTCTGATGGAAGCACAGTATCGTCAGCCcacagaaatacagagacagaccaTTGGCTTTGCGTTGCAAGGTAAAGATGTTCTGGGTGCTGCAAAGACGGGCTCTGGAAAAACACTGGCCTTTCTCATTCCTGTTTTGGAGTGTTTGTATCGTCAGCAGTGGACAGCCATGGATGGCCTGGGGGCCCTCATCATCTCCCCGACACGAGAGCTGGCCTATCAGACCTTCGAAGTACTCCGTAAAGTGGGCAAGAACCACGAGTTCTCTGCCGGCCTCATCATTGGCGGAAAGGACCTGAAAAATGAGTCTGAGAAGATCCACCGCACcaacatcatcatctgcacgcCAGGACGCCTGCTCCAGCACATGGACGAGACTGCTGCGTTCCATGCCTCCGATCTGCACATGCTAGTTTTGGATGAGGCGGATCGTATCCTGGACATGGGTTTTGCCGACACTATCAACGCCATAGTGGAGAACCTCCCCAAGACCCGTCAGACACTGCTGTTCTCAGCCACACAGACCAAGTCAGTGAAAGACCTGGCCCGCCTCAGCCTCAAAGACCCAGAGTACGTCTGGGTGCACGAGAAGGCCAAGTTCAGCACGCCGGCCACGCTGGAGCAGAACTACGTGGTGTGTGAGCTGCACCAGAAAGTCAACATGCTCTTCTCCTTCATCAGGAGCCACCTGCAGAAGAAAGTCATTGTCTTCTTTGCCTGTTGCAAAGAGGTGCAATACCTGTTCCGGGTGTTCTGTCGGCTGCGTCCGGGCATGCCCATCCTGGCCCTGCATGGGAAGCAACAGCAGATGAAGagggtggaggtctacaatgacTTCATCAAGAAGAAGAATGCTGTGCTCTTCGCCACAGACATTGCAGCCAGAGGCCTAGACTTCCCTGCCGTGAACTGGGTGTTGCAGTTTGACTGTCCAGAGGATGCCAACACATACATCCACAGAGTGGGACGAACCGCCAGGtataaggagggaggagaggctcTGCTTGTCCTGCTGCCCTCAGAAGAGAAGGACATGGTATCTCAGCTCCAGGAGAAGAAAGTCCCCATCAACAGAATTCAGGTGAACCCAGAGAAGCTGACGAGCGTGCAGCAGAAGCTGGAGGCTTTCCTGGCCCAGGAGAAGGAACAGAAGGAGCGAGCTCAGAGGTGTTTCGTCTCCTACCTGCGCTCCGTCTACCTCATGAAAAACAAAGACGTCTTTGATGTGTTCCAGCTCAAGCTCCAGGAGTATGCAGCTTCTCTGGGCCTCGCTGTTGCTCCAAGGGTGCGTTTTCTCAACAAAGTCCAGAAGCAGAGAGCAGACCCTGGACAGAGTGGCGGGCTGGGAGATGTGGCCCCgcatgaggaggagaaggaactAAAGAGCTTCAAGGCTCAGCTCAGAGGAGACGGGCTCAAGTCCGAAGCTCAAGAATCCCAAAGCTCAGATGAGgaagatgatgaggaggaggatgaggaaaagGTACAGCCCGGTCCTAAGGGTCTCATCTTCGGGGAAGATGAAACCGAGGAGGATGAAGATATGAGGGACTTGGACCTGCTCACAGTGAAGAGAAAAGATGTCTTCAGTCTGGAGGAAGTTGACCAGGATGATGAGGAAACTGACAGTAACACCATTAAGAAAACAGAAAAAGAGACCAAGTTCAAAGAGGCCAAGAAAGTCCTGAAGAGAAACTTCCAAGTCAACACCAAATTAGTCTTCACTGAAGAGGGACAGATGGTGCAGCAGTGGCCCCCGCTCCAGAGGACGGCCGTGCCAGccacagagggggaggaggatgacTGCACGTCGGGCATCAATGtggaggaggccagagagaggCTGCGCCGAGAGGACCAGGAGTTTGACAAGCTGGAGTACAGGCGTAAAGTCAAAGAGAAACACAGGGAGAAGAGACTGAAGGAAAACGCTGCCAGAAGAGAAGCCAGCAAGCAGTACGCTGAGAAGTCCggtgaggaggatgaagaggaggtggTAGCGTACCTGGGCGGTTCTGATGGAGAAGAGTTTGACCCCAGCACACTGCCCGACCCGGACAAACTACACTACGACTCAGAGGAAGAAGATGACCAGATCAGCCCTGCTGCTGGGACGAGGAAGCGCATCCACAGTGACCACATCGATGACTcgggtgaagaagaagaagaagaagaagaagaagaagaagaagaggaggaggcggCAGCGGGGAGCAGGAAGAGACCCAGGCAACAAGCAACCGCCAAGCCCCTGGACACCGGCCTCTCTCTGGCCGAGGACGAAGCACTGGTCCTGCATCTGCTGGGGAACCGGAGCTAGGGCTAACAAATTACCCAACACTGTCTTATGGCGGATCCTCTCCAATGTCTTGTCATAATTTGGGGATGTTCCCCAATATTTTGGGAACATAAAACAAATAAAGTGTATGTTAGTTACAAGTGACCTGTTATTGTTTTACTGTGATTACGTGTGCTTGTTTGGTACATAAAATGTAATTCAACCAGAAAAACAAGTGCTTTAGCTAGTACCCATCCACATactatttatttgttttttttaaatgtcctcaAGTGTTTATTTGAAATACAGTAATTTGCTCTA

Function

NR:

description
probable ATP-dependent RNA helicase DDX10

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14776 DDX10, DBP4; ATP-dependent RNA helicase DDX10/DBP4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937556.1 False 3014 mRNA 0.50 18 39425122 39494021
XM_036937557.1 True 3008 mRNA 0.50 18 39425122 39494021

Neighbor

gene id symbol gene type direction distance location
si:dkey-183i3.9 yk005 coding downstream 15353 39406573 ~ 39409769 (-)
si:dkey-183i3.5 LOC106567720 coding downstream 19859 39398996 ~ 39405263 (-)
si:dkey-183i3.6 LOC106567717 coding downstream 48073 39371194 ~ 39377049 (-)
zgc:171740 LOC106567716 coding downstream 66270 39343615 ~ 39358852 (-)
fkbp6 LOC106567715 coding downstream 82116 39336054 ~ 39343006 (-)
zw10 LOC106567722 coding upstream 175 39494196 ~ 39502812 (-)
LOC110537606 LOC106567723 coding upstream 11902 39505923 ~ 39508142 (-)
LOC110537607 LOC100194713 coding upstream 24576 39518597 ~ 39546033 (-)
LOC110537608 LOC106567727 coding upstream 74340 39568361 ~ 39690332 (-)
ncam1a LOC106567728 coding upstream 233753 39727774 ~ 40043489 (-)
G1069610 NA non-coding downstream 5778 39419107 ~ 39419344 (-)
G1069606 NA non-coding downstream 9089 39415716 ~ 39416033 (-)
G1069600 LOC106567719 non-coding downstream 28788 39395581 ~ 39396334 (-)
G1069544 NA non-coding downstream 129263 39295625 ~ 39295859 (-)
G1069543 NA non-coding downstream 131216 39293444 ~ 39293906 (-)
G1069635 NA non-coding upstream 10104 39504125 ~ 39504676 (-)
G1069650 NA non-coding upstream 21641 39515662 ~ 39515872 (-)
G1069652 NA non-coding upstream 23302 39517323 ~ 39517552 (-)
G1069679 NA non-coding upstream 65942 39559963 ~ 39560182 (-)
G1069685 NA non-coding upstream 70022 39564043 ~ 39564266 (-)
G1069456 LOC106567699 other downstream 316160 39108300 ~ 39108962 (-)
LOC110537579 LOC106603438 other downstream 352650 39041272 ~ 39072520 (-)
LOC110539142 NA other downstream 1718751 37672182 ~ 37706371 (-)
LOC110537546 ppm1e other downstream 1757868 37603158 ~ 37667366 (-)
G1071725 NA other upstream 1544845 41038866 ~ 41039931 (-)
G1073009 NA other upstream 2551842 42045863 ~ 42062632 (-)
G1074731 NA other upstream 3209982 42704003 ~ 42713923 (-)
G1075335 NA other upstream 4069764 43563785 ~ 43564240 (-)
G1075399 NA other upstream 4166538 43660559 ~ 43660837 (-)

Expression


Co-expression Network