htr3a (LOC106567725)


Basic Information

Item Value
gene id htr3a
gene name LOC106567725
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 39556689 ~ 39563770 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625871.2
GTTTTACTTGTTTTAGTCAAGAAACTGAGCAATAATACCGGACGCTTTGCCAATGCCACCTTGGTACGCCTCTCCGAATACTTGAGTGCTGGGTACAAGAAGGGTGTGCGACCCGTGCGCAACTGGCGAAATTGCACAATGGTGGCCATCGACCTTATGGTGTACTCTATCCTCAGTGTGGATGAGAAGAACCAGGTTCTGACAACATATATATGGTACAGGCAGGAATGGACAGACGAATTCTTGGTATGGAACCCAGAGGATTTTGATGATGTGAATCAAATGTCCATACCGACTGCGAATGTGTGGGTGCCTGACATACTAATCAACGAGTTTGTGGATGTGGGGAAGTCTCCGGACATTCCCTATGTGTACGTGACCCATTATGGACTAGTGCGCAACTACAAGCCTATCCAGGTGGTGACCGCCTGCACTCTCAACATCTACAACTTCCCATTCGACGTCCAGAACTGCAGCCTGACCTTTCAGAGCTGGCTCCATACCCTTAATGACATCGATCTCAAGCTGATGAGGAGCGCAGAGGAACTCAAGGTGGACAAGAGTGTATTCATGAACCAGGGGGAGTGGGAGCTTCTTCACGTCCTGTCTAAATACAAGCGCTTCAGTCTGGACAACATTGACTCCTATGCAGAGATGAAGTTCAATGTGGTGATCCGACGCAGACCTCTGTTCTACACTGTGAACCTGCTGCTGCCCAGCATCTTCCTGATGGTGATGGACCTGGTGGGCTTCTATCTCCCTCCGGACAGTGGAGAGAGGGTGTCCTTCAAGATCACCCTGCTTCTGGGATACTCCGTCTTCCTCATCATCGTCTCTGACACGCTGCCCGCCACCGCCATCGGGACGCCGCTCATAGgTGTATACTTTGTAGTGTGCATGGCCCTGTTGGTGATCAGCCTGACAGAGACAGTGTTGATAGTGCGACTGGTGCATAAGCAGGACCTGCAGCCCCACGTACCCCAGTGGCTCAAACACTTGGTGCTGGAGCGGGCCACAGTCCTCCTCTGCATCCGCAACAAACACAGCCTGTGCTCCATGCTGTCCAGGGACTCTGACCGTCTGGGCCACTACAAAGAGAACAACATCAGTCCAGCTCGAtgcaatcaccaccaccaccttcaccACACCTGCGAGAGTGGCCGTGGTGGCGGGGACATCATGGAGCGGGGTCTGGGGGGCCTGTCTGTGGTGCGTGACAACACGCCGCCCGTCATGGACAACATCCTGCAGGAAATCTCATCTATCCGTGGCTTCCTGGAGAAGAGGGACGAGTCCCGGGACATCGCCAAGGAGTGGCTGCAGGTGGGCTACGTGCTGGACGTCCTGCTCTTCAGGGTCTACCTGGTGGCCATGCTGGCCTACAGCATCACCCTGGGGACCCTCTGGTCCGTGTGGCAGTACGCCTGAGGGCCTCACAGTGGAGGAGGGCCTGACGGTGAAGGTGGAGGGCCTCACTGTGGAGAAGGGGACAGAGGGCTAAAGCGTGCCTGATACAAAAGCGTTTTATTGAGGTCGATCTATTTAGTTGAGCCTCATGGTGGAGATAAAGTAGGGGGTCGTTTGAGTCTGGGGTAATTCTCGGGAGTAGAGGAACGAGGGGGAAGATGATAGATTGGATGTTGGTATAGTTTACACTCATTTCCCTTAGCCAGTTGCCCCTTTCTAACACTGTCTATCTTACTGCTCTGTGTATTGTTCAGGTCTTGATTACCTAGGAATGGCCTAAAGAACTGTTGAAAAAGTTCAGATATTGTATCCTTTGTCAGCATACAGGTGtatttatatttgtttatttggatccccattagcttttgcagacACAGCTACTCTTCCAGGAGTCCAGAAAAACACAACACATGACAAGTGACaaaacactgatagacaaggacagtcacacacatttaaaatacaACGAAATACTCACAGTACAACTACAAAATAAAGTATGCTACTTGATAATGGCACAATATTTCATGCATTATTCACTTTTTTTCAAAATCATCTACTAATGTGTACCAACAGCTGTATTGATGTGAAGGAAACCATATCTTTATAATAGTCGACATGGTACCATGCACATAAAATGAATAAATATGCCATACCTTAGATTTTGTATGTCCAATAATGTTTAATATAGTTGGGGAGCAATGAGCTCCCCTGCATATTTCCTGTTTTTTTATATCTCTTCAAGCTTTATTTACTTATGGAGGAGAGGTTTTGCGATTTGCTTGCATTTGCTTTTAAATTGCATAGTCTGTATATTCCAAGATCAACTTCACTCCTTCAGTTAAAGTGTTAATATTGTTAATAAAATATACGAAACATATAACATCACATTTAAATAGATAGCGAATATTAACTTGTGCTAAAGTAACTGCAATACTCGTTCACCTG

Function

NR:

description
5-hydroxytryptamine receptor 3A-like

GO: NA

KEGG:

id description
K04819 HTR3; 5-hydroxytryptamine receptor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625871.2 True 2415 mRNA 0.48 8 39556689 39563770

Neighbor

gene id symbol gene type direction distance location
htr3b LOC106567726 coding upstream 1118 39546047 ~ 39555571 (+)
LOC110537603 LOC106567719 coding upstream 154969 39380904 ~ 39401720 (+)
LOC110538893 rfc2 coding upstream 185331 39362997 ~ 39371358 (+)
LOC118937671 NA coding upstream 194663 39358964 ~ 39362026 (+)
mks1 mks1 coding upstream 274235 39266156 ~ 39282454 (+)
LOC118937980 NA coding downstream 611581 40175351 ~ 40175541 (+)
cadm1a LOC106567730 coding downstream 947388 40511158 ~ 40938098 (+)
LOC110539145 NA coding downstream 1465570 41029340 ~ 41030449 (+)
anapc13 anc13 coding downstream 1562637 41126407 ~ 41130505 (+)
LOC110537617 LOC106567734 coding downstream 2115773 41679543 ~ 41732016 (+)
G1068856 LOC106567723 non-coding upstream 49009 39506223 ~ 39507680 (+)
G1068855 NA non-coding upstream 50510 39505797 ~ 39506179 (+)
G1068854 NA non-coding upstream 50907 39504853 ~ 39505782 (+)
G1068853 NA non-coding upstream 51933 39504223 ~ 39504756 (+)
G1068899 zbtb16 non-coding downstream 4786 39568556 ~ 39573507 (+)
G1068904 NA non-coding downstream 20075 39583845 ~ 39586230 (+)
G1069722 NA non-coding downstream 158630 39722400 ~ 39722620 (+)
G1069735 LOC106567728 non-coding downstream 191796 39755566 ~ 39774712 (+)
G1070164 NA non-coding downstream 488400 40052170 ~ 40052392 (+)
styxl1 styxl1 other upstream 466746 39077007 ~ 39090045 (+)
prkrip1 LOC106567678 other upstream 1315316 38231737 ~ 38241376 (+)
G1067321 LOC106567676 other upstream 1387741 38168337 ~ 38168948 (+)
G1067221 NA other upstream 1617413 37938832 ~ 37939276 (+)
G1067156 LOC100380745 other upstream 1691214 37854888 ~ 37865475 (+)
G1070479 NA other downstream 728682 40292452 ~ 40292734 (+)
G1071144 NA other downstream 1550808 41114578 ~ 41114957 (+)
G1071159 NA other downstream 1573666 41137436 ~ 41137868 (+)
G1072789 NA other downstream 2633280 42197050 ~ 42216163 (+)
G1074265 NA other downstream 4281397 43845167 ~ 43845968 (+)

Expression

htr3a(LOC106567725) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 0.6.
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htr3a(LOC106567725) Expression in each Bioproject

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htr3a(LOC106567725) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 12.
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Co-expression Network