LOC118937672


Basic Information

Item Value
gene id LOC118937672
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 39973042 ~ 39979531 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034984.1
ACATTTAAAACCTTGAAGTTGCCCAGGAGTTCAGGCTCGATAGTGTATCTGATAAACATTTAAAACCTTGAAGTTGCCCAGGAGTTCAGGCTCGATAGTGTATCTGATAAACATTTAAAACCTTGAATTTGCCCAGGAGTTCAGGCTCGATAGTGTATCTGATAAATGCTTAAAGAGTTTAATCAAGCTCCCGCACGGACAGTCTCTTTTTGTTCTGAGGAGCTCAGAAAATGAAATGAAGTGACAATACTTAGCCACACGCCTTAACTGATGTCTTTATCTCTTTCCTTCTGCTCTGGCAAAAGGTAGTAACTACAGAATTAGTTAGAAAGAAAGTGAAAACTGAGAAGTGTGCTTTCCCGGCTATTGTCATGGAAATATGCGTCCTAACCAAATGCTTGTGTATATCCATCCCATTAAGCACGTTTTAGTAGTGAGAGACAAATTGGTTTGACACTAGTAGAGACACACATCCTCTTCGCTAAGTGACAGACTCTGCAGCTTGATCGATGAAGGGAAATGGCCAATCCAATTAGATTTGGATTGGTTTAACATGAGCATTATTGAATTAAAAGTCTTTCAGCTTTCCCATTGATCCTGCCAGAGCTTAGGCTGAGtaggcactgtacatatctagGCCACGCCCTCTTTACAGGACAATACATGTGGATAAGAGCCCGGTGTAAATTGTAGTAATGGGTAAAAAAAGCTATACAGTTTACATATCGCAATAGTTTTGGGGGACAATATgggactcgtttcaggaaactaggcatatgtcgcaagcCACTACTTCACAGAAGAGGCAttagaatgttttattttttttatcaaaatgattTTTTTTGGGCAGAATGCCTTCTGGACCACGTGAAccttcatgtgccttaataagaaACTtgcatgccatctgtaaataggaATTAAAAAAAGAATAATCACAAGCCTAGATGtttttagccacagaaaaaggagggaaccttcccgctagacatgattggctgagataatgaatgggctggacaAGCGATGAGATGATTTTGGATTGATCGACCATGTAGCACATTCTGTCTATAACATAGCCTGCTCGCTATGTGTAGATACTCCTTTCtactgcatttttttttaaagatattatCGAGGTGTTTCTCCGGATTACatattcaaactaagggcaaaAATGGAATCCGTGACAGAGGGAAAAAGATCTGATGAATCTTATGGCATTgcacacggtcagtgtgaaccagagcGATTTGACACAACGGGCCAAGCAAGCTGTACAAATGAAACGGAAACGACACAGGACGTCCAATTTAATGAAATGGGTTGCAGTCTGCCGTGAACCGTTCATCTATGAATACGGGTAAGAGTccagctacattttcagatattatacatttcagGAATTTAGTCAGGAAgtcgttttcattgcaagttaaagccagctagctaacattagttggCTGActcactagctaacattacgtttaTGATCTGTGTATTAATATTATCTCAtgaagccatttgcattgctacttatagcctaatgttagatGGCTAACTTACTTTGAACCTAGTTCGTTAGCTTTAactagctatgacaatcggtttgtattgcttGTACTCTATGGGTTGGGGTTATGGGTCATTGTTTAGCTACCTACATGTTTAAACAAGACTCCACTTCGGCAGATGATTACATGACTAATCAAGTTAGTCAGGTGTGTTTGGCGGTGATTACGGCTatctattgtataataatgctaagatatttgtatctggaatttgtctttcagcatctgTAGAACACGCCAGACTCTCttccaccagtcatacaaggagaatggtctaatgcctcaTCAAAAAGAGAGCTGGTCCAAGCAAGCGCAGGTTACACCTGAAGCATGAGGACTTGCAGCGAGTTGTGAACAACAACTATGCCGAGGATAATGCAATAGTATTGCCACGATGCCACCCAGGACACAAACACTTTGGTGGAAAGCTGCTGCCATCCCATGTGACAGAAGCAGCAGTGTGGTGTCTCTACAAGGAATCGATGACAACACTTGaGGTACGTGTATTCGGGCTTTCTTCCTTCAGGAATCTGTGGAGAGATTGCTGGTGTggtgaaggacagcactgtgacGGGACAACATCCCACTGTTGGTTGGACTGGAGctttgatgctctggagcctggtgttgttgtcGCCAAAGGAGCAGCGACCCAgtcgggaccaggtttcagctgctgcgcaaTGCTGATGTCCTTTctcccatagatggtctgcctgtacaagcaccacctggacaCAACTAGACAAAGATATATTTTTGAGAAGATTAGGGAATTTTGCGACAAGGAGGCCATGGACATCAAATGTCCTGCACCAAAGtaaagggcaggacagaaacaggctctccaAATATAGATGCCCTTGTTCATGCGTGGTGCTGATGGACCAGTTCATCACTGGAGGCCGAGTTCCCATTCATCCGGACTCTCTCTAGTAGCAGCACATTCACATCACTCTCCCCctaacacacaaacacgcatacCATACGTTGCTGCTACATTTTGTTTTTATCAcgctgctcagccactttaccccttATTGTATGCATATAACTTCATTGTCTATCAAAAGTATCACTGATATCGTTATTGACATTGTtcgtgtacatactgtatattttgttCTTTCTCTTACTGGCACTTTGacacttttgtttatttattgtttatatTGACACTTtctatttttgatattgctactatgcaagtaaccatttcactgtatcATGTACACCTTCTGTACACTTAACAAGATGTGACTGGCATTTATAGCATTTCATTCACaggacccatcaatttagacattTGTCTGCGGTAAGCAtcatctaatatttataaaatatattttctggaCACCTTTTTTTTTATATTGCTACTTTACAAATATGCatgtaaccatttcactgtaccgtttacaccttctgtatgtgacaaataaatgttgattttgtttga

Function

NR:

description
hypothetical protein cypCar_00043689, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034984.1 True 3033 mRNA 0.41 3 39973042 39979531

Neighbor

gene id symbol gene type direction distance location
LOC110537608 LOC106567727 coding downstream 282710 39568361 ~ 39690332 (-)
LOC110537607 LOC100194713 coding downstream 427009 39518597 ~ 39546033 (-)
LOC110537606 LOC106567723 coding downstream 464900 39505923 ~ 39508142 (-)
zw10 LOC106567722 coding downstream 470230 39494196 ~ 39502812 (-)
ddx10 LOC106567721 coding downstream 479021 39425122 ~ 39494021 (-)
sc5d sc5d coding upstream 1113651 41093182 ~ 41101891 (-)
LOC118937914 NA coding upstream 1115051 41094582 ~ 41094719 (-)
arhgap32b arhgap32 coding upstream 1150625 41130156 ~ 41364010 (-)
igsf9bb LOC106567733 coding upstream 1396759 41376290 ~ 41566655 (-)
LOC118937883 NA coding upstream 1759190 41738721 ~ 41740327 (-)
G1070100 NA non-coding downstream 28420 39944218 ~ 39944622 (-)
ncam1a LOC106567728 non-coding downstream 236218 39727774 ~ 40043489 (-)
G1069955 NA non-coding downstream 256503 39716287 ~ 39716539 (-)
G1069693 NA non-coding downstream 385582 39586540 ~ 39587460 (-)
G1069688 NA non-coding downstream 407569 39565248 ~ 39565473 (-)
G1070221 NA non-coding upstream 75091 40054622 ~ 40055113 (-)
G1070284 NA non-coding upstream 163000 40142531 ~ 40142744 (-)
G1070297 NA non-coding upstream 172653 40152184 ~ 40152501 (-)
G1070304 NA non-coding upstream 176267 40155798 ~ 40156116 (-)
G1070308 NA non-coding upstream 178063 40157594 ~ 40157838 (-)
fkbp6 LOC106567715 other downstream 635068 39336054 ~ 39343006 (-)
G1069456 LOC106567699 other downstream 864080 39108300 ~ 39108962 (-)
LOC110537579 LOC106603438 other downstream 900570 39041272 ~ 39072520 (-)
LOC110539142 NA other downstream 2266671 37672182 ~ 37706371 (-)
LOC110537546 ppm1e other downstream 2305788 37603158 ~ 37667366 (-)
G1071725 NA other upstream 1059335 41038866 ~ 41039931 (-)
G1073009 NA other upstream 2066332 42045863 ~ 42062632 (-)
G1074731 NA other upstream 2724472 42704003 ~ 42713923 (-)
G1075335 NA other upstream 3584254 43563785 ~ 43564240 (-)
G1075399 NA other upstream 3681028 43660559 ~ 43660837 (-)

Expression


Co-expression Network