Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118937980 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 40175351 ~ 40175541 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| LOC569167 protein, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005035384.1 | True | 191 | mRNA | 0.50 | 1 | 40175351 | 40175541 |
40,174,000
40,174,400
40,174,800
40,175,200
40,175,600
40,176,000
40,176,400
40,176,800
40,177,200
40,177,600
40,178,000
40,178,400
NC_048576.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| htr3a | LOC106567725 | coding | upstream | 611581 | 39556689 ~ 39563770 (+) |
| htr3b | LOC106567726 | coding | upstream | 619780 | 39546047 ~ 39555571 (+) |
| LOC110537603 | LOC106567719 | coding | upstream | 773631 | 39380904 ~ 39401720 (+) |
| LOC110538893 | rfc2 | coding | upstream | 803993 | 39362997 ~ 39371358 (+) |
| LOC118937671 | NA | coding | upstream | 813325 | 39358964 ~ 39362026 (+) |
| cadm1a | LOC106567730 | coding | downstream | 335617 | 40511158 ~ 40938098 (+) |
| LOC110539145 | NA | coding | downstream | 853799 | 41029340 ~ 41030449 (+) |
| anapc13 | anc13 | coding | downstream | 950866 | 41126407 ~ 41130505 (+) |
| LOC110537617 | LOC106567734 | coding | downstream | 1504002 | 41679543 ~ 41732016 (+) |
| LOC110537618 | LOC105024202 | coding | downstream | 1574404 | 41749945 ~ 41762641 (+) |
| G1070165 | NA | non-coding | upstream | 120170 | 40054914 ~ 40055181 (+) |
| G1070164 | NA | non-coding | upstream | 122959 | 40052170 ~ 40052392 (+) |
| G1069735 | LOC106567728 | non-coding | upstream | 400639 | 39755566 ~ 39774712 (+) |
| G1069722 | NA | non-coding | upstream | 452731 | 39722400 ~ 39722620 (+) |
| G1068904 | NA | non-coding | upstream | 589121 | 39583845 ~ 39586230 (+) |
| G1070367 | NA | non-coding | downstream | 86443 | 40261984 ~ 40262244 (+) |
| G1070438 | NA | non-coding | downstream | 87756 | 40263297 ~ 40263514 (+) |
| G1070442 | NA | non-coding | downstream | 89030 | 40264571 ~ 40264945 (+) |
| G1070467 | NA | non-coding | downstream | 108716 | 40284257 ~ 40284460 (+) |
| G1070471 | NA | non-coding | downstream | 111541 | 40287082 ~ 40287415 (+) |
| styxl1 | styxl1 | other | upstream | 1085408 | 39077007 ~ 39090045 (+) |
| prkrip1 | LOC106567678 | other | upstream | 1933978 | 38231737 ~ 38241376 (+) |
| G1067321 | LOC106567676 | other | upstream | 2006403 | 38168337 ~ 38168948 (+) |
| G1067221 | NA | other | upstream | 2236075 | 37938832 ~ 37939276 (+) |
| G1067156 | LOC100380745 | other | upstream | 2309876 | 37854888 ~ 37865475 (+) |
| G1070479 | NA | other | downstream | 116911 | 40292452 ~ 40292734 (+) |
| G1071144 | NA | other | downstream | 939037 | 41114578 ~ 41114957 (+) |
| G1071159 | NA | other | downstream | 961895 | 41137436 ~ 41137868 (+) |
| G1072789 | NA | other | downstream | 2021509 | 42197050 ~ 42216163 (+) |
| G1074265 | NA | other | downstream | 3669626 | 43845167 ~ 43845968 (+) |
