sc5d (sc5d)


Basic Information

Item Value
gene id sc5d
gene name sc5d
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 41093182 ~ 41101891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937596.1
actggcctacctggttaaataaagATTCAGACATGGATCTTGTGCTGAATGTCGCCGACCACTATGTCCTCACCCCCTACGTGTACCCGTCGTCGTGGCCTGAAGACGGGGCGCTGCGCCAGATCATCAGCCTGTTGGTAGTCACCAACCTGGGAGCCGCAGTCCTCTACCTGGGCCTGGGGTGGCTGAGCTACCACTTCATCTTTGACCACAACCTCATGAAACATCCACAGTTTCTAAAGATCATTGTTGGTCCTCAGAACCAGGTGCGGCGGGAGATCAAATACGCCATGACCTCGCTACCCATAATCAGTATACCCACTGTGGCGTTATTTTTCCTTGAGGTCAGAGGATACAGCAAGCTCTATGACGACGTCGAAGAGTCTCCCATGGGCTGGCCCTTTGTGCTTCTCAGCATGATTTCCTTCTTGTTATTCACGGACGGGTGCATTTATTGGATTCATCGGTTTCTTCACCACAAGAGTATTTACAAGCACTTCCACAAGCCACACCATGTGTGGAAGATCCCCACCCCGTTTGCCAGCCACGCCTTCCACCCGCTGGATGGCTTCCTGCAGGGTCTGCCCTACCACATCTaccccttcctcttccctctgcaCAAGGTGCTCTACCTGGCCCTCTACATCTTCGTCAATATCTGGACTGTGTCTATCCATGACGGCGACTACCGCGTGCCCGGACCACTGCAGGAAGTGGTCAACGGGGCGGCCCACCACACGGACCACCACCTCTTCTTCGACGTCAACTATGGCCAGTACTTCACCCTGTGGGACCGCATTGGCGGGTCTTACCGCAACCCCTCAGTACTCGAAGGGAAGGGCCCCCTCGACTGCATTCGTAGACTGACTGCCGAGGGGAAGATGAGCGCTAATGGGGCTAATGCCAATGGGCACACGAATGGGCATGCTAATGTAAGCGGTACAAAGAGTAAGGAGGAGTAGTTGGTACATGTGGTGTAGTGTCATGATGAATGAGTTCTTAGTTGATAAAGCTAAGCTAGGTGTCACTGATAAGGATTAGCTCACATACTGCTTCACACATGGATTGTTTTCATTCATTATCCCATTATAAATAATCAAGCTACAGTTGCTTATCTTTCTTAAACTGTCCCTTTATTAATTTTCCTCATTGTTTCAATGCTAGGGAAAGGGAGGAGGCAAGAATGTCTTGACATTTCACTGAAAAACACTGATATACTGAACATGTGGGTGATATAATTGTTTGGAACTTAATTTCAGTTTCTGCATTTGCCAAACAAATACTTAATGAGAATTTAGACAAAAGCACCAAGCTATTCTCATAGTCATAGGCTATAGAAACCTAGCAGGCCTCTCACCATTTCCTGGATTGTCATCATTGACTTGAGAAATAATTGCTTATTTTAATGAAGTTCATTGAGTGCATGCTGATTGATTGTGCCTGTTTGGAGGTGTTGTGTGTTGTATGGATTTTGTTTGATATCTGAGGGGAGGTGACAATGAAATAGGATGTCTAGTGCTGAGTAATGCAAGAAAATGAAAATGCATGACGTTCCTACAACCCCTATGTACTATAAGATATTAAGGTTGTAGTGGTTAATGGCAGGAACTGGGATTCTACACACCATGACTCGTCAGATTTGGTCATGCTCATATCCAGTAGTTAACCCtctgggacttttctccaacaagATAAAAGTAAAACGTCTATGACGAATGGAAGTGTGTTTACCGGAATGTTTTGCATTTTAAAGCAGACATATCTGGggaatgaaataaaataaaaaaa
>XM_021623781.2
CATTGTTCGCCTTATCAAGTGGCTTGGTAAAGTGGACAACTGCGTCAGCCGGCTTTATCACAGATGCAGCCGGCAGTAATTTTCAGTGACAACAGACTCCCCCAGGACTGccgcagaagaaatatcagcccacaCAGAGAGATTCAGACATGGATCTTGTGCTGAATGTCGCCGACCACTATGTCCTCACCCCCTACGTGTACCCGTCGTCGTGGCCTGAAGACGGGGCGCTGCGCCAGATCATCAGCCTGTTGGTAGTCACCAACCTGGGAGCCGCAGTCCTCTACCTGGGCCTGGGGTGGCTGAGCTACCACTTCATCTTTGACCACAACCTCATGAAACATCCACAGTTTCTAAAGATCATTGTTGGTCCTCAGAACCAGGTGCGGCGGGAGATCAAATACGCCATGACCTCGCTACCCATAATCAGTATACCCACTGTGGCGTTATTTTTCCTTGAGGTCAGAGGATACAGCAAGCTCTATGACGACGTCGAAGAGTCTCCCATGGGCTGGCCCTTTGTGCTTCTCAGCATGATTTCCTTCTTGTTATTCACGGACGGGTGCATTTATTGGATTCATCGGTTTCTTCACCACAAGAGTATTTACAAGCACTTCCACAAGCCACACCATGTGTGGAAGATCCCCACCCCGTTTGCCAGCCACGCCTTCCACCCGCTGGATGGCTTCCTGCAGGGTCTGCCCTACCACATCTaccccttcctcttccctctgcaCAAGGTGCTCTACCTGGCCCTCTACATCTTCGTCAATATCTGGACTGTGTCTATCCATGACGGCGACTACCGCGTGCCCGGACCACTGCAGGAAGTGGTCAACGGGGCGGCCCACCACACGGACCACCACCTCTTCTTCGACGTCAACTATGGCCAGTACTTCACCCTGTGGGACCGCATTGGCGGGTCTTACCGCAACCCCTCAGTACTCGAAGGGAAGGGCCCCCTCGACTGCATTCGTAGACTGACTGCCGAGGGGAAGATGAGCGCTAATGGGGCTAATGCCAATGGGCACACGAATGGGCATGCTAATGTAAGCGGTACAAAGAGTAAGGAGGAGTAGTTGGTACATGTGGTGTAGTGTCATGATGAATGAGTTCTTAGTTGATAAAGCTAAGCTAGGTGTCACTGATAAGGATTAGCTCACATACTGCTTCACACATGGATTGTTTTCATTCATTATCCCATTATAAATAATCAAGCTACAGTTGCTTATCTTTCTTAAACTGTCCCTTTATTAATTTTCCTCATTGTTTCAATGCTAGGGAAAGGGAGGAGGCAAGAATGTCTTGACATTTCACTGAAAAACACTGATATACTGAACATGTGGGTGATATAATTGTTTGGAACTTAATTTCAGTTTCTGCATTTGCCAAACAAATACTTAATGAGAATTTAGACAAAAGCACCAAGCTATTCTCATAGTCATAGGCTATAGAAACCTAGCAGGCCTCTCACCATTTCCTGGATTGTCATCATTGACTTGAGAAATAATTGCTTATTTTAATGAAGTTCATTGAGTGCATGCTGATTGATTGTGCCTGTTTGGAGGTGTTGTGTGTTGTATGGATTTTGTTTGATATCTGAGGGGAGGTGACAATGAAATAGGATGTCTAGTGCTGAGTAATGCAAGAAAATGAAAATGCATGACGTTCCTACAACCCCTATGTACTATAAGATATTAAGGTTGTAGTGGTTAATGGCAGGAACTGGGATTCTACACACCATGACTCGTCAGATTTGGTCATGCTCATATCCAGTAGTTAACCCtctgggacttttctccaacaagATAAAAGTAAAACGTCTATGACGAATGGAAGTGTGTTTACCGGAATGTTTTGCATTTTAAAGCAGACATATCTGGggaatgaaataaaataaaaaaa
>XM_021623779.2
TCGTGACAAGGAAGTATCTTTCCATTGGATATGTGTGCAATTACGTCGTTGTTTCTTTAAACAGGGAGTTGCAGATTGGTTACCCGAATACCTATAGTTTGATGACATTGTTCGCCTTATCAAGTGGCTTGGTAAAGTGGACAACTGCGTCAGATTCAGACATGGATCTTGTGCTGAATGTCGCCGACCACTATGTCCTCACCCCCTACGTGTACCCGTCGTCGTGGCCTGAAGACGGGGCGCTGCGCCAGATCATCAGCCTGTTGGTAGTCACCAACCTGGGAGCCGCAGTCCTCTACCTGGGCCTGGGGTGGCTGAGCTACCACTTCATCTTTGACCACAACCTCATGAAACATCCACAGTTTCTAAAGATCATTGTTGGTCCTCAGAACCAGGTGCGGCGGGAGATCAAATACGCCATGACCTCGCTACCCATAATCAGTATACCCACTGTGGCGTTATTTTTCCTTGAGGTCAGAGGATACAGCAAGCTCTATGACGACGTCGAAGAGTCTCCCATGGGCTGGCCCTTTGTGCTTCTCAGCATGATTTCCTTCTTGTTATTCACGGACGGGTGCATTTATTGGATTCATCGGTTTCTTCACCACAAGAGTATTTACAAGCACTTCCACAAGCCACACCATGTGTGGAAGATCCCCACCCCGTTTGCCAGCCACGCCTTCCACCCGCTGGATGGCTTCCTGCAGGGTCTGCCCTACCACATCTaccccttcctcttccctctgcaCAAGGTGCTCTACCTGGCCCTCTACATCTTCGTCAATATCTGGACTGTGTCTATCCATGACGGCGACTACCGCGTGCCCGGACCACTGCAGGAAGTGGTCAACGGGGCGGCCCACCACACGGACCACCACCTCTTCTTCGACGTCAACTATGGCCAGTACTTCACCCTGTGGGACCGCATTGGCGGGTCTTACCGCAACCCCTCAGTACTCGAAGGGAAGGGCCCCCTCGACTGCATTCGTAGACTGACTGCCGAGGGGAAGATGAGCGCTAATGGGGCTAATGCCAATGGGCACACGAATGGGCATGCTAATGTAAGCGGTACAAAGAGTAAGGAGGAGTAGTTGGTACATGTGGTGTAGTGTCATGATGAATGAGTTCTTAGTTGATAAAGCTAAGCTAGGTGTCACTGATAAGGATTAGCTCACATACTGCTTCACACATGGATTGTTTTCATTCATTATCCCATTATAAATAATCAAGCTACAGTTGCTTATCTTTCTTAAACTGTCCCTTTATTAATTTTCCTCATTGTTTCAATGCTAGGGAAAGGGAGGAGGCAAGAATGTCTTGACATTTCACTGAAAAACACTGATATACTGAACATGTGGGTGATATAATTGTTTGGAACTTAATTTCAGTTTCTGCATTTGCCAAACAAATACTTAATGAGAATTTAGACAAAAGCACCAAGCTATTCTCATAGTCATAGGCTATAGAAACCTAGCAGGCCTCTCACCATTTCCTGGATTGTCATCATTGACTTGAGAAATAATTGCTTATTTTAATGAAGTTCATTGAGTGCATGCTGATTGATTGTGCCTGTTTGGAGGTGTTGTGTGTTGTATGGATTTTGTTTGATATCTGAGGGGAGGTGACAATGAAATAGGATGTCTAGTGCTGAGTAATGCAAGAAAATGAAAATGCATGACGTTCCTACAACCCCTATGTACTATAAGATATTAAGGTTGTAGTGGTTAATGGCAGGAACTGGGATTCTACACACCATGACTCGTCAGATTTGGTCATGCTCATATCCAGTAGTTAACCCtctgggacttttctccaacaagATAAAAGTAAAACGTCTATGACGAATGGAAGTGTGTTTACCGGAATGTTTTGCATTTTAAAGCAGACATATCTGGggaatgaaataaaataaaaaaa
>XM_021623780.2
TCGTGACAAGGAAGTATCTTTCCATTGGATATGTGTGCAATTACGTCGTTGTTTCTTTAAACAGGGAGTTGCAGATTGGTTACCCGAATACCTATAGTTTGATGACATTGTTCGCCTTATCAAGTGGCTTGGTAAAGTGGACAACTGCGTCAGATTCAGACATGGATCTTGTGCTGAATGTCGCCGACCACTATGTCCTCACCCCCTACGTGTACCCGTCGTCGTGGCCTGAAGACGGGGCGCTGCGCCAGATCATCAGCCTGTTGGTAGTCACCAACCTGGGAGCCGCAGTCCTCTACCTGGGCCTGGGGTGGCTGAGCTACCACTTCATCTTTGACCACAACCTCATGAAACATCCACAGTTTCTAAAGAACCAGGTGCGGCGGGAGATCAAATACGCCATGACCTCGCTACCCATAATCAGTATACCCACTGTGGCGTTATTTTTCCTTGAGGTCAGAGGATACAGCAAGCTCTATGACGACGTCGAAGAGTCTCCCATGGGCTGGCCCTTTGTGCTTCTCAGCATGATTTCCTTCTTGTTATTCACGGACGGGTGCATTTATTGGATTCATCGGTTTCTTCACCACAAGAGTATTTACAAGCACTTCCACAAGCCACACCATGTGTGGAAGATCCCCACCCCGTTTGCCAGCCACGCCTTCCACCCGCTGGATGGCTTCCTGCAGGGTCTGCCCTACCACATCTaccccttcctcttccctctgcaCAAGGTGCTCTACCTGGCCCTCTACATCTTCGTCAATATCTGGACTGTGTCTATCCATGACGGCGACTACCGCGTGCCCGGACCACTGCAGGAAGTGGTCAACGGGGCGGCCCACCACACGGACCACCACCTCTTCTTCGACGTCAACTATGGCCAGTACTTCACCCTGTGGGACCGCATTGGCGGGTCTTACCGCAACCCCTCAGTACTCGAAGGGAAGGGCCCCCTCGACTGCATTCGTAGACTGACTGCCGAGGGGAAGATGAGCGCTAATGGGGCTAATGCCAATGGGCACACGAATGGGCATGCTAATGTAAGCGGTACAAAGAGTAAGGAGGAGTAGTTGGTACATGTGGTGTAGTGTCATGATGAATGAGTTCTTAGTTGATAAAGCTAAGCTAGGTGTCACTGATAAGGATTAGCTCACATACTGCTTCACACATGGATTGTTTTCATTCATTATCCCATTATAAATAATCAAGCTACAGTTGCTTATCTTTCTTAAACTGTCCCTTTATTAATTTTCCTCATTGTTTCAATGCTAGGGAAAGGGAGGAGGCAAGAATGTCTTGACATTTCACTGAAAAACACTGATATACTGAACATGTGGGTGATATAATTGTTTGGAACTTAATTTCAGTTTCTGCATTTGCCAAACAAATACTTAATGAGAATTTAGACAAAAGCACCAAGCTATTCTCATAGTCATAGGCTATAGAAACCTAGCAGGCCTCTCACCATTTCCTGGATTGTCATCATTGACTTGAGAAATAATTGCTTATTTTAATGAAGTTCATTGAGTGCATGCTGATTGATTGTGCCTGTTTGGAGGTGTTGTGTGTTGTATGGATTTTGTTTGATATCTGAGGGGAGGTGACAATGAAATAGGATGTCTAGTGCTGAGTAATGCAAGAAAATGAAAATGCATGACGTTCCTACAACCCCTATGTACTATAAGATATTAAGGTTGTAGTGGTTAATGGCAGGAACTGGGATTCTACACACCATGACTCGTCAGATTTGGTCATGCTCATATCCAGTAGTTAACCCtctgggacttttctccaacaagATAAAAGTAAAACGTCTATGACGAATGGAAGTGTGTTTACCGGAATGTTTTGCATTTTAAAGCAGACATATCTGGggaatgaaataaaataaaaaaa

Function

symbol description
sc5d Predicted to enable C-5 sterol desaturase activity. Acts upstream of or within response to yeast. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human SC5D (sterol-C5-desaturase).

NR:

description
lathosterol oxidase isoform X2

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00227 SC5DL, ERG3; Delta7-sterol 5-desaturase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937596.1 False 1788 mRNA 0.46 5 41093182 41098902
XM_021623781.2 False 1905 mRNA 0.47 6 41093182 41101786
XM_021623779.2 False 1917 mRNA 0.46 5 41093182 41101891
XM_021623780.2 True 1899 mRNA 0.46 5 41093182 41101891

Neighbor

gene id symbol gene type direction distance location
ncam1a LOC106567728 coding downstream 1049693 39727774 ~ 40043489 (-)
LOC118937672 NA coding downstream 1113651 39973042 ~ 39979531 (-)
LOC110537608 LOC106567727 coding downstream 1402850 39568361 ~ 39690332 (-)
LOC110537607 LOC100194713 coding downstream 1547149 39518597 ~ 39546033 (-)
LOC110537606 LOC106567723 coding downstream 1585040 39505923 ~ 39508142 (-)
arhgap32b arhgap32 coding upstream 28265 41130156 ~ 41364010 (-)
igsf9bb LOC106567733 coding upstream 274399 41376290 ~ 41566655 (-)
LOC118937883 NA coding upstream 636830 41738721 ~ 41740327 (-)
esama LOC106567655 coding upstream 703185 41805076 ~ 41877145 (-)
LOC110537621 msantd2 coding upstream 782848 41884739 ~ 41891363 (-)
G1071772 NA non-coding downstream 3710 41089273 ~ 41089472 (-)
G1071770 NA non-coding downstream 6154 41086519 ~ 41087028 (-)
G1071767 NA non-coding downstream 9580 41083272 ~ 41083602 (-)
G1071722 NA non-coding downstream 57043 41035918 ~ 41036139 (-)
G1071719 NA non-coding downstream 61435 41031540 ~ 41031747 (-)
G1071781 NA non-coding upstream 6147 41108038 ~ 41108329 (-)
G1071783 NA non-coding upstream 7898 41109789 ~ 41110015 (-)
G1071785 NA non-coding upstream 11837 41113728 ~ 41114069 (-)
G1071786 NA non-coding upstream 13919 41115810 ~ 41116146 (-)
G1071787 NA non-coding upstream 15006 41116897 ~ 41117186 (-)
G1071725 NA other downstream 53251 41038866 ~ 41039931 (-)
fkbp6 LOC106567715 other downstream 1755208 39336054 ~ 39343006 (-)
G1069456 LOC106567699 other downstream 1984220 39108300 ~ 39108962 (-)
LOC110537579 LOC106603438 other downstream 2020710 39041272 ~ 39072520 (-)
LOC110539142 NA other downstream 3386811 37672182 ~ 37706371 (-)
G1073009 NA other upstream 943972 42045863 ~ 42062632 (-)
G1074731 NA other upstream 1602112 42704003 ~ 42713923 (-)
G1075335 NA other upstream 2461894 43563785 ~ 43564240 (-)
G1075399 NA other upstream 2558668 43660559 ~ 43660837 (-)
G1075509 NA other upstream 2672173 43774064 ~ 43774425 (-)

Expression


Co-expression Network