XLOC_002920 (si:ch211-244c8.4)


Basic Information

Item Value
gene id XLOC_002920
gene name si:ch211-244c8.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35537974 ~ 35542071 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005404
GGTAGGATGATGACAGCCCCTGGCTCCGCTCCATTGCTGACGAAAGCTGCTAAGACCCTCAGTTGCCATGGCGACCGGCTGGAGCAGCCAGAGGAGAggagcagagagagagggagagggagggcgGAGGCTTGGGAGGGAGGAACAGaagcagagagagaaagagggagcgCTTAAAAAAAAGAGCAATAGACAGAGGGAGGGAACGAGAGTGGAAACGGAGATAGATGCACATTTCTAGCACAGAAAAATAAAAGGGAAgaggtaatttatttatttattctgattaGAGTCGTGTTTCATTCATCTGAGCGCGCGGTTTTAGATAGAGAAGGTGTAAGAGTAGACAGAGACGTCGAGACCAAGGTGAAGATACGCTGCAGTGGAGCTGGAATATGGATGCACAGTCGGAGAGCTGTGAACCACCGCCATGTGACCCTCAGCCTCCAGGTAAAATCAGAAAAGCCTTAAAACTGTTCGGCAAGAGGAAGCCTGGAAGCAGTGTCGCTAGCATCTTCTCCATGCGAGGGAAAGGAGATGGAGGCCCTAAATCACCACCGTCAAGGAGCAAAACCCAGGATGGATTAAATGAGCCGACGGCCCCTGAAGCAGTGGCAGAGCAGGTGGATCTTGACCAGGAGGACGAGAGTCAACAGGAGGATGCTCCAATGGAGGAGTTCATCAGCGGGGACATGAATTCACAAACAACCCCCACGAGGCAGTCCATCTCCTCCCTTACCTCTGCTAAATCTCTGAGTTTCCTTAATATGCTACGCAAAGGTCGGAGGGGAATGACAGGAGAACGGCAGGCTCAGACTGAGTCTCAAAGGCCCGGGCGGCAACGGAAGGGTCTGAAGGGATTATTTGGAACCGTACGCTGGCGTGGAAAGGAGAAAGAGGATGAAGAGGAGGTTCAACCAGGACCTCCCCTTCTTGCTTCCCGTTCCAACAGTGTTGAGATTATAAAAGAGAGTCTCACATTGACACCAGGGCCTCCGCCTCGCTCTGTAGAGGAGACAGAGGAGAAACATCAGCTCTCTACACCACAAGAGGGCCCAACATCATCTGAGGACTCTGCAAAGGTGAGCGGGACAACCAAAGCCCCAACAAATGAACGCTTGAGCACACTGCTTGGAGATATCTCATCAATTTTGAGCTTCGATTCACTGACACCATGTGGAGATATTGTAGCAGATGTTGAGGCAGAATGGGCCAAAGCTAGCAATCGAATGGAGGGAGCACCTAGCACACTAAAAGTGGATAGTTCTGAGAAGACGTCATCTTCTGCAACTTCTACCAGATCAAAACCTAGCCCTTCTCCAACATCTACTCTCAGCCCAACAATCTCCTCCAAACCTTCTCCTACATCAGCAGCCAAACCCACCCCTTCACCTTCAACAACCAAACCTATCCCTAGCCCTTTGACAAAACCTGCAGGTACCTCAGCCTCCTCTTCGGTGACCCAGATGTCACCGTCTATGCCTACTGGCCCTATTCTCTCAACCCCAACATCCAGCCCTCTCTCCAAACCCACACCTGTGCCATCAACTATGCCCATAACCAAACCTACCCCAACCCTTCAAGCTACAACAACTCCTCAGATTATTAAACCTACCCCAACCCCTGCATCTGCCTCCATTTCACAGCCTATACCAAGCCCTAAATCCAAACCTATAACTTCCCCAGCTCAACCAGCCCCATCTCCTAAATCTAGCCCTGAAATTAAACCTTACACAATATCTAGTGACATAACTGCCCCCAAAACTGAACCTACACCCATTTCTACATCCATCTTCATACCTACATCTGAAACCTCCCCACCACCAATCATTCCTACCCCTGAAACTGCTGCTGTTACCAAAACTGAACCTACCCAGACCCCTGCGGCTAAACCTACCCAAGCCCCAACCCCTGCATCAAAATCAACTCCAAGCATTACCCATGAATCCAAACAAGCTACCTCTGCAACCAAATACACCCCTTTTCCACCACCATTTGGAAAACCAGCACCAGCCCCAGCACCAACACCAAGACCAAAATATGTGACGACATTTGGATTATCGACAAGCCGTAACACTGCTCCTATAGCCAAGGCTGAGACAAAACAACCAACAGTGCAGACTCCAAAATCTTGCACCCAAACTAGCACAACATCTGTAAGGAAAGTCTCCATTTCTGAATCAACGGTTCCTGTTGCTAAACCTCCATCCACTCTTGCCTCATCACAATCTGTAACCATGTCTGCACTTAGTACCATGAAATCACCCACAGGTGCCTCCGCACCACACATTCCTGTCTTGAAGTCGCCTTCGGGTACTACCCCATCCTTCATTTCTTCGAAAAGAGAAGATGACGGCAGCATGGATTTGAGGGAGGCAGTGAAAAGGGGTCCTGCAGTGAAGCCCACAACTCTGAGTAAGATCCCTGTTAGCGGTGGAGGCAGACCTAAAGTGCATCATCGAGATTCCCAGCCCAATGGAGATGAGGACCACTCGAATCTACCAACACCAGTGCATGAAGAGGACAGCCCATTTACTCTCTCACGTGAAAGCAGCAGCAAAGAGGCCCTCAGCGATGTCTCCACAGAATCAGGGGCTGTCACTCCAACTCTCTCCCACAGCCAAGAGGATATTATGGATGGCAAACTTGGTCCAGCACGTTCTGGTGCCACAAGCTCATCCCGGGAGTCTAAGATCCCAGTCAAACACGGATCTACTGCAACCTACCATTCTGTGCAGGGGAGGGGAGAAGCACGTTCCAAGATACCTGTCTCCAAAATGCCCGTTCGTAAGACCAGCAATAAGCCTGCACCAGCAGCTACAGCTGCCATCCCCCGAAAATAACTGATAGTCAAATTCTATGACAAAACCTTGACACATTCCACTGGCGGCTTTCTTCAAGATCTACTTTTTAATATCCAATCAGGCATCACTGTGCCTGGTTTGAGCCTTTTTGCAGGAACAACtggattgtttttattatttaaaccaaCTTACACACTGGGTGTCAATCACaccagtgttttttttctgtcttcatATCACTCTTGAACAATCTGACGCTGTGGATTCAATTCTGTGTGcccaggcgcacacacacacacacacacaaagacccTGTCTAAATGATCCCCATGGCAACCAAACATGGAAATTAAATGGCAGGCACTAAAGCACAAGAGCCCTCACCTGGAATCCTGAGCCATGTAGACCTTCTCTGAAGATACAAGAAATGTATCCGTCCATTATCTCCGGCACTGTAGTGCTTTATAATGGTCTTTTGTGGTAATTAAAAGCCTCAGAGAAGAAGCAAGCAATCCATCATCGAGTCTTCTGGTTTTCACCCAGGTCTAAAAACACCACAGGGGCCAAGTATCATCACAAGGTGCTTTTTTCTTATCTTCCCAGCCtgccacacagaaaaaaaaaaggttttgttacAGAGCAATGGAGGAATCTTTGTAGCCTTGGCCTTCTTTTTGTAGATTCTTTTTTTTGTCCGTTTTCCAacgtttttttccttttcaagtGAACTTTGTGGATCAATGTTAGTCTTCTTGGAGCTCCCACGTGTTGTATGCAAACAAACAGAATATCTTACCTGTACAGTTCATGCCAAGACAGGATATTCACAGTCTCTTCTGAATGTATGTAGCAGAACGCATGCCCTACTTTTTCAACCAGACAAGCCATCTCACTCCTCTCCCGATgtccttttttttgtttgctgtttttgtaAACACTGTGTTAAGTCACACAGTGCCTGTCAGCTGTAACAAATGTGTGTGTAACATTTCATGGAAAGAAAAACCATGAGGCATATGGATCTAACTCTGTGGATTTTTCTTTCCGCCTGCACTTGAACGTTGTGTGAGACTGCATTAAAGGACAGTAGAGGTGATGTTTCGCAGGCAGTTGGTGTTATAGGTAAGCTAAGACTTTTATGGATGAGTTTTGGACGGATAGATCCTTTGAGTTGCCATCACATGCACATATTTAATAGAGGACtatttttgtgtgtatgagtgcgtgtatgACTGGGTGTGATTATCTTAATGTCACATGTTTCctatttaataaaatgtgattatacCTAGAA

Function

symbol description
si:ch211-244c8.4 Predicted to enable beta-catenin binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in regulation of canonical Wnt signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane.

GO:

id name namespace
GO:0060828 regulation of canonical Wnt signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding molecular_function
GO:0008013 beta-catenin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-488 Predicted to enable beta-catenin binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in regulation of canonical Wnt signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane.

Ensembl:

ensembl_id ENSDARG00000103071

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005404 True 4098 mRNA 0.47 1 35537974 35542071

Neighbor

gene id symbol gene type direction distance location
XLOC_002919 NA coding downstream 106319 35429504 ~ 35431655 (-)
XLOC_002918 gabrr3a coding downstream 127456 35367722 ~ 35410518 (-)
XLOC_002917 NA coding downstream 216337 35312892 ~ 35321637 (-)
XLOC_002916 prr11 coding downstream 280413 35250205 ~ 35257561 (-)
XLOC_002915 smg8 coding downstream 289472 35238488 ~ 35248502 (-)
XLOC_002921 smg6 coding upstream 42576 35584647 ~ 35613752 (-)
XLOC_002922 BX663516.3 coding upstream 78262 35620333 ~ 35620449 (-)
XLOC_002923 NA coding upstream 108513 35650584 ~ 35654680 (-)
XLOC_002924 ovca2 coding upstream 122058 35664129 ~ 35668584 (-)
XLOC_002925 NA coding upstream 269681 35811752 ~ 36093533 (-)
XLOC_002912 BX465844.1 non-coding downstream 373683 35160010 ~ 35164291 (-)
XLOC_002909 NA non-coding downstream 479530 35054281 ~ 35058444 (-)
XLOC_002906 CT573139.2 non-coding downstream 578796 34951060 ~ 34959178 (-)
XLOC_002926 BX088524.4 non-coding upstream 621108 36163179 ~ 36163294 (-)
XLOC_002939 NA non-coding upstream 923272 36465343 ~ 36469895 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_17003708_17006278 NA coding CI01000304 null 17003365 ~ 17006383 (-)
eurasian perch (Perca fluviatilis) G84719 NA non-coding NC_053119.1 CM020916.1 14072633 ~ 14072948 (-)
striped catfish (Pangasianodon hypophthalmus) G96117 LOC108264083 non-coding NC_047600.1 CM018546.1 8664289 ~ 8665008 (+)
tiger barb (Puntius tetrazona) G77112 si:ch211-244c8.4,LOC107728884,LOC107686180,LOC107743390,LOC107697427,LOC107577989 unknown NC_056708.1 CM032077.1 13690150 ~ 13758268 (+)