LOC110537621 (msantd2)


Basic Information

Item Value
gene id LOC110537621
gene name msantd2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 41884739 ~ 41891363 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623800.2
ACATTTACACGGGAACATGGCAACGACGAGTGCATGCGCGCACACAAATTATACAGTGCAGATGGCTTGACCCATATTTTCTGTTTGCAATATTAATTGACCGCTCACCCAATCCACTGAGAAGACGTCAACTCCCACCCCCCGCCCCTTAGCAACAGAAGCAAGATGGCGGCGCCCAGTAACGCTGATCATTCTCCAGAGATATCGACGCCTTTAAAGATACCGAAAACAGAAGTGCCATCACCAGAATCAGAAGATTTGAGCGACAGCAACCAATATCATTCCAATCCCTCCACACCTAATCGATTCTCGCCTCTCAACGTAGGTTTGTCGATTTCTGGGAGCGCAGGCCGAAGTGGATCGGCCTGTGCATCAAATAGCTTCACCGCTTGCCGAGGGATGTCGTGGACCCCATCAGAAACAAACGCCCTTATTGCGGTATGGGGGAATGAAAGACTGACAGAGGCACGAATGCAGCAGCTGGAGGTTGCAGGCACCGTTTTCTCTGGAAAGGCTCCTGGTCCCGCAATGTACGAGCGGGTCTCACGAGCCCTAGCAGAGCTCGGCTACGAAAGGACCCCATCCCAATGCAGGGAAAGGATGAAGGTAATGGGGGACAGAACGCTGCGACGGTGCTACAGCCGAGTGAAGGAGCACGGTGTCGGCAAGAGGAAGAGCAGCTACTCCATCGAGCAGCTGGAAAAGGTGTTTGGCCAGGGAGGCTGGGACTCCCAGATGTGTGCCCCCGTCCTCATCAACAGCAGTGGCCTGTACCAGGAAATGGAGTCTGACGGCAGCACCATGGAGGATTTCTCCCAGGAAGACTGGTGCAACCAGGTGCTGGCCTCGGCCTtccaggagggagagatggaaactGAGGAAACACAGCCACCAAAGAATGCCAGAGTCCTGCAGCTGCGACCTGAGCCTTCGGAGCAAGTCCAGAAACAGGCAGTGATGCTGAACGTGGTGCGTATCCTGGAGTCGGTGCAGGTGAAGTGGGAGCACTTTCAGACGTGGACCGACTTCTCCCGGCTGCACCTTTCCAACAAGCTGGCCATTTTTGGCGTGGGCTACAACACGCGCTGGTGTGAGGACATCCGCTACCACTACGCAGAGATCAGCTCCCAGGTGCCCCTTGGCAAGCGGCTGCGCGAGTACTTCAACCCAGAGAAGGCAGAGGGCCGTGTCATCATGACCAAAGTACAGAAGATGAACTGGAAGAACGTGTATTATAAGTTCCTGGACATCACCATTAGCGAAGCACGCTGCCTGGAACTGCACATGGAGGTGGACTGGATCCCCATAGCCCAGGCCAGGGTGACGGGCTGTAGCAACGGGACCTCCAAGTATCTCCTACCGGGGGGTATCCCCAAGACTTACGGCCTGTACGCCATAGGCTACGAGGACGTGGTGGCGGAGTTGCACTACGCAGGGGAGGATGAGGCTCCAGCCTCTCCACTGCAACACCAAGACACTGACCAGAGCTTGCCTCTCTCTGGGTCGTCGGGCTCCGGCGGGCCCGGGTCCGAGAGTGTGGTGAGGCCGGGGGGacgagtgagggagggggagaggactgGGGCCAAAGTGACCTACTGCTACCTGGGCATCGCAGAGGAGAGGACCTTACAGCAATGTCTGTTCCAGCACTTTCAGAGCTCAGGCAAGCATTACAGCCGCAGGGAGATCTCGGCCGTAACATGCTTCCTCCAGGGGAATTGCAGCGGCACCGGCCAGCAGACCAGGGAAGAGGGCCTCTCCTTGGGCCCTGAACATTCGGCCATATACATTAAATTTATCGAGGTGGAGCTAGATTTCCTCTCTGCTGGCTCACTGTTGGAATGTCTAGAAATTGCAGTTGGTTACTCTTTAAAGTACAACAACAAAGAGGCGTTGTAACGCTTGTTGTTTTGACTCCCATTAACTGAAGGATTGAACAGGGGCCAGAGGGACATGCAATATCTCTTTCCCCCAATTTAACTGCAGACCTGAGTTCAAAtgctatttgaaatcatttaaaatacttcggctgggcttgattgagcttgccttgGTCAATGGAACCAAAAGAATAGTCACAAAACTGTTAACCCCAGCTGACTCATTCGGCAGGCAATAgcaaacacaaaataatatttgaaaTAGTGTTTGAACCCCGGTCTGTGTACATGCTGTCTTATCAGGGGATGTGAGAGGGGAATGGCTACTGCTGAATGCATTTCCCTACCTTGAGGATATAGCAgtggacatacagtatatttgtcACAAGAAGATGGTGTGCACTTGTTTTAAAACTGCCTTTACATTTCTTTGAATTTGGATGTCTATCGTCAGGTCTAAGGTGCCAGAAAAAGATCCCGGGGTAAAGATCATGATCCAGGAACTTGATCCAATTCTAATAGAGGACCTAGAGGGGCAATATGAATGAAGATGTTGAATCTATCTCtatatagaaatatatatttaAGAATATATATTGATGTTGTCAAGCATTCCAGCATTTATTAACATTATGAATTTCAAAGAAGTATGTTAAtgttttgatatatatatatatatatatattattggtTAACCAGTGTCTTTGTGTATTTTTGTTTCCAGGTCACAGTCTTGTGTTTACATGTTTTGAAGAAAATAATAAACAGGGCACAGACCGTCA
>XM_021623801.2
ACATTTACACGGGAACATGGCAACGACGAGTGCATGCGCGCACACAAATTATACAGTGCAGATGGCTTGACCCATATTTTCTGTTTGCAATATTAATTGACCGCTCACCCAATCCACTGAGAAGACGTCAACTCCCACCCCCCGCCCCTTAGCAACAGAAGCAAGATGGCGGCGCCCAGTAACGCTGATCATTCTCCAGAGATATCGACGCCTTTAAAGATACCGAAAACAGAAGTGCCATCACCAGAATCAGAAGATTTGAGCGACAGCAACCAATATCATTCCAATCCCTCCACACCTAATCGATTCTCGCCTCTCAACGTAGGTTTGTCGATTTCTGGGAGCGCAGGCCGAAGTGGATCGGCCTGTGCATCAAATAGCTTCACCGCTTGCCGAGGGATGTCGTGGACCCCATCAGAAACAAACGCCCTTATTGCGGTATGGGGGAATGAAAGACTGACAGAGGCACGAATGCAGCAGCTGGAGGTTGCAGGCACCGTTTTCTCTGGAAAGGCTCCTGGTCCCGCAATGTACGAGCGGGTCTCACGAGCCCTAGCAGAGCTCGGCTACGAAAGGACCCCATCCCAATGCAGGGAAAGGATGAAGACGCTGCGACGGTGCTACAGCCGAGTGAAGGAGCACGGTGTCGGCAAGAGGAAGAGCAGCTACTCCATCGAGCAGCTGGAAAAGGTGTTTGGCCAGGGAGGCTGGGACTCCCAGATGTGTGCCCCCGTCCTCATCAACAGCAGTGGCCTGTACCAGGAAATGGAGTCTGACGGCAGCACCATGGAGGATTTCTCCCAGGAAGACTGGTGCAACCAGGTGCTGGCCTCGGCCTtccaggagggagagatggaaactGAGGAAACACAGCCACCAAAGAATGCCAGAGTCCTGCAGCTGCGACCTGAGCCTTCGGAGCAAGTCCAGAAACAGGCAGTGATGCTGAACGTGGTGCGTATCCTGGAGTCGGTGCAGGTGAAGTGGGAGCACTTTCAGACGTGGACCGACTTCTCCCGGCTGCACCTTTCCAACAAGCTGGCCATTTTTGGCGTGGGCTACAACACGCGCTGGTGTGAGGACATCCGCTACCACTACGCAGAGATCAGCTCCCAGGTGCCCCTTGGCAAGCGGCTGCGCGAGTACTTCAACCCAGAGAAGGCAGAGGGCCGTGTCATCATGACCAAAGTACAGAAGATGAACTGGAAGAACGTGTATTATAAGTTCCTGGACATCACCATTAGCGAAGCACGCTGCCTGGAACTGCACATGGAGGTGGACTGGATCCCCATAGCCCAGGCCAGGGTGACGGGCTGTAGCAACGGGACCTCCAAGTATCTCCTACCGGGGGGTATCCCCAAGACTTACGGCCTGTACGCCATAGGCTACGAGGACGTGGTGGCGGAGTTGCACTACGCAGGGGAGGATGAGGCTCCAGCCTCTCCACTGCAACACCAAGACACTGACCAGAGCTTGCCTCTCTCTGGGTCGTCGGGCTCCGGCGGGCCCGGGTCCGAGAGTGTGGTGAGGCCGGGGGGacgagtgagggagggggagaggactgGGGCCAAAGTGACCTACTGCTACCTGGGCATCGCAGAGGAGAGGACCTTACAGCAATGTCTGTTCCAGCACTTTCAGAGCTCAGGCAAGCATTACAGCCGCAGGGAGATCTCGGCCGTAACATGCTTCCTCCAGGGGAATTGCAGCGGCACCGGCCAGCAGACCAGGGAAGAGGGCCTCTCCTTGGGCCCTGAACATTCGGCCATATACATTAAATTTATCGAGGTGGAGCTAGATTTCCTCTCTGCTGGCTCACTGTTGGAATGTCTAGAAATTGCAGTTGGTTACTCTTTAAAGTACAACAACAAAGAGGCGTTGTAACGCTTGTTGTTTTGACTCCCATTAACTGAAGGATTGAACAGGGGCCAGAGGGACATGCAATATCTCTTTCCCCCAATTTAACTGCAGACCTGAGTTCAAAtgctatttgaaatcatttaaaatacttcggctgggcttgattgagcttgccttgGTCAATGGAACCAAAAGAATAGTCACAAAACTGTTAACCCCAGCTGACTCATTCGGCAGGCAATAgcaaacacaaaataatatttgaaaTAGTGTTTGAACCCCGGTCTGTGTACATGCTGTCTTATCAGGGGATGTGAGAGGGGAATGGCTACTGCTGAATGCATTTCCCTACCTTGAGGATATAGCAgtggacatacagtatatttgtcACAAGAAGATGGTGTGCACTTGTTTTAAAACTGCCTTTACATTTCTTTGAATTTGGATGTCTATCGTCAGGTCTAAGGTGCCAGAAAAAGATCCCGGGGTAAAGATCATGATCCAGGAACTTGATCCAATTCTAATAGAGGACCTAGAGGGGCAATATGAATGAAGATGTTGAATCTATCTCtatatagaaatatatatttaAGAATATATATTGATGTTGTCAAGCATTCCAGCATTTATTAACATTATGAATTTCAAAGAAGTATGTTAAtgttttgatatatatatatatatatatattattggtTAACCAGTGTCTTTGTGTATTTTTGTTTCCAGGTCACAGTCTTGTGTTTACATGTTTTGAAGAAAATAATAAACAGGGCACAGACCGTCA

Function

symbol description
msantd2 Orthologous to human MSANTD2 (Myb/SANT DNA binding domain containing 2).

NR:

description
myb/SANT-like DNA-binding domain-containing protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623800.2 False 2662 mRNA 0.50 4 41884739 41891363
XM_021623801.2 True 2647 mRNA 0.50 4 41884739 41891363

Neighbor

gene id symbol gene type direction distance location
esama LOC106567655 coding downstream 7594 41805076 ~ 41877145 (-)
LOC118937883 NA coding downstream 144412 41738721 ~ 41740327 (-)
igsf9bb LOC106567733 coding downstream 318084 41376290 ~ 41566655 (-)
arhgap32b arhgap32 coding downstream 520729 41130156 ~ 41364010 (-)
sc5d sc5d coding downstream 782848 41093182 ~ 41101891 (-)
LOC110537624 robo4 coding upstream 333808 42225171 ~ 42253779 (-)
tmem218 tmem218 coding upstream 367287 42258650 ~ 42265787 (-)
LOC110538899 LOC106567646 coding upstream 1066074 42957437 ~ 43517782 (-)
LOC118937884 LOC106611372 coding upstream 1654670 43546033 ~ 43575350 (-)
LOC118937674 cssa04h11orf63 coding upstream 1757733 43649096 ~ 43686262 (-)
G1072538 NA non-coding downstream 81282 41803237 ~ 41803457 (-)
G1072497 LOC107751387 non-coding downstream 93478 41785132 ~ 41791261 (-)
G1072519 NA non-coding downstream 114822 41769695 ~ 41769917 (-)
G1072500 NA non-coding downstream 150686 41733850 ~ 41734053 (-)
G1073025 NA non-coding upstream 187536 42078899 ~ 42079144 (-)
G1073081 NA non-coding upstream 275537 42166900 ~ 42192399 (-)
G1073256 NA non-coding upstream 515786 42407149 ~ 42407395 (-)
G1074536 NA non-coding upstream 527432 42418795 ~ 42431550 (-)
G1074908 NA non-coding upstream 1021714 42913077 ~ 42918069 (-)
G1071725 NA other downstream 844808 41038866 ~ 41039931 (-)
fkbp6 LOC106567715 other downstream 2546765 39336054 ~ 39343006 (-)
G1069456 LOC106567699 other downstream 2775777 39108300 ~ 39108962 (-)
LOC110537579 LOC106603438 other downstream 2812267 39041272 ~ 39072520 (-)
LOC110539142 NA other downstream 4178368 37672182 ~ 37706371 (-)
G1073009 NA other upstream 154500 42045863 ~ 42062632 (-)
G1074731 NA other upstream 812640 42704003 ~ 42713923 (-)
G1075335 NA other upstream 1672422 43563785 ~ 43564240 (-)
G1075399 NA other upstream 1769196 43660559 ~ 43660837 (-)
G1075509 NA other upstream 1882701 43774064 ~ 43774425 (-)

Expression


Co-expression Network