Gene
RNA
| Item | Value |
|---|---|
| gene id | opcml |
| gene name | opcml |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 42524965 ~ 42934947 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| opcml | Is expressed in nervous system. Human ortholog(s) of this gene implicated in ovarian cancer. Orthologous to human OPCML (opioid binding protein/cell adhesion molecule like). |
| description |
|---|
| PREDICTED: opioid-binding protein/cell adhesion molecule-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021623816.2 | False | 7900 | mRNA | 0.39 | 8 | 42524965 | 42934947 |
| XM_021623815.2 | False | 8245 | mRNA | 0.40 | 7 | 42678391 | 42934947 |
| TU1222120 | True | 4056 | lncRNA | 0.36 | 2 | 42930836 | 42934947 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110537628 | LOC106567648 | coding | upstream | 153627 | 42361750 ~ 42371338 (+) |
| LOC110537627 | pknox2 | coding | upstream | 163974 | 42267015 ~ 42360991 (+) |
| robo3 | robo3 | coding | upstream | 316398 | 41928464 ~ 42208567 (+) |
| fez1 | fez1 | coding | upstream | 724297 | 41774045 ~ 41800668 (+) |
| LOC110537618 | LOC105024202 | coding | upstream | 762324 | 41749945 ~ 41762641 (+) |
| lim2.1 | LOC106567645 | coding | downstream | 691302 | 43626249 ~ 43640278 (+) |
| bsx | LOC106567644 | coding | downstream | 708358 | 43643305 ~ 43645368 (+) |
| LOC110537636 | LOC106567643 | coding | downstream | 773388 | 43708335 ~ 43725115 (+) |
| LOC100135842 | LOC106567641 | coding | downstream | 857174 | 43792121 ~ 43802192 (+) |
| LOC118937904 | NA | coding | downstream | 865602 | 43800549 ~ 43800642 (+) |
| G1073275 | NA | non-coding | upstream | 41761 | 42418624 ~ 42483204 (+) |
| G1073263 | NA | non-coding | upstream | 113224 | 42411529 ~ 42411741 (+) |
| G1073261 | NA | non-coding | upstream | 113939 | 42410818 ~ 42411026 (+) |
| G1073255 | NA | non-coding | upstream | 118303 | 42406452 ~ 42406662 (+) |
| G1072802 | robo4 | non-coding | upstream | 295058 | 42229017 ~ 42229907 (+) |
| G1074174 | NA | non-coding | downstream | 725462 | 43660409 ~ 43660633 (+) |
| G1074184 | NA | non-coding | downstream | 738512 | 43673459 ~ 43673661 (+) |
| G1074193 | NA | non-coding | downstream | 756361 | 43691308 ~ 43691527 (+) |
| G1074198 | NA | non-coding | downstream | 765389 | 43700336 ~ 43700568 (+) |
| G1074145 | NA | non-coding | downstream | 790407 | 43725354 ~ 43752063 (+) |
| G1072789 | NA | other | upstream | 308802 | 42197050 ~ 42216163 (+) |
| G1071159 | NA | other | upstream | 1387097 | 41137436 ~ 41137868 (+) |
| G1071144 | NA | other | upstream | 1410008 | 41114578 ~ 41114957 (+) |
| G1070479 | NA | other | upstream | 2232231 | 40292452 ~ 40292734 (+) |
| styxl1 | styxl1 | other | upstream | 3435022 | 39077007 ~ 39090045 (+) |
| G1074265 | NA | other | downstream | 910220 | 43845167 ~ 43845968 (+) |
| G1074270 | LOC106567637 | other | downstream | 921803 | 43856750 ~ 43860609 (+) |
| G1074437 | LOC106567630 | other | downstream | 1192685 | 44127632 ~ 44134118 (+) |
| G1075891 | capns1 | other | downstream | 1495130 | 44430077 ~ 44439184 (+) |
| G1075963 | NA | other | downstream | 1516359 | 44451306 ~ 44451940 (+) |
| G1073639 | NA | non-coding | upstream | 12699 | 42913097 ~ 42918137 (+) |
| G1073411 | NA | non-coding | upstream | 284761 | 42610480 ~ 42646075 (+) |
| G1073342 | NA | non-coding | upstream | 386567 | 42521608 ~ 42544269 (+) |
