LOC118937884 (LOC106611372)


Basic Information

Item Value
gene id LOC118937884
gene name LOC106611372
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 43546033 ~ 43575350 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035296.1
agaaGCAATCAGTTACAAGGCAAGCATACAGATTGAGGCCCTCAATCCAACTGAGGACAGAGAAATATGTGTGCACCAGACATATCAAGGCTTCTTACATGCATGGCTTTGAGATATTTCAACAATACCAGACGAACAAAAGTGTCACAAGAACCACGACAGTCTCCAATCTCACAGTTCATGGAGACCCGTTTTATGGCAGTACAGCATGAATAATCCACAGCAGAAAGCCATCAACAATGCAATACTGTCCAACCTGGTTATCGATTGCAACTTGCCTCTGTCTATTGTGGAAAACAAGCGCTTTCGTCACTTTAGTACAGCCCAGTGTGTCGTAGAACATTGACATCAAACGTAGAGAACCTCGCTACAGAGAGACGTTCAAAACTGAAAACTCAGTTGAGCAACACTGACCATGTTTCAGTCACAGTGTACATTTGGTCCGGCCGAAAGATGAGGGGGTTCCTTGGTGTCACTGTGCACTGtatggagaaagatggagagaggatacAGCTCAAGTCCAATCTCATGGCTTGTGACCACTTCAAAGGCCCACACACGGCCAAAATAATCTGTGAGCAATTTGAGGCCATATGTGATGAGTTCAGCATTAAAGATAAATTGGACTATATCATTAGTGACAATGCTGCCAACATGAGAAAAGCATTCACAGTGTGCTTCCCCATTGAACAAGAAGAAGTACATGACGAAGATTGCCTTGATGACCCAGAGCTCTGGAATGACCTAACCCTGGAAGACCAGCAAACAGTGGATGCTGCTATTGCAAAAAAACAGCACTTTCAATGTTTTGCCCACACTCTCCAGCTGGTGGTGGGAGACGGCTTGAAAGAAACAAAAGTGATGACTCCTTCTCTTTCAAAGTTAGCAAAAATCAGCTCATACAAGCACAACATTCAAAGAGGTGTTTGAGGTTGAATTTGGGGAAAGAGGCATCCCTCCTGCTGTCAACAAGATGGAACTCAACACTAAGACAAGTGAAGGCAGTTATCCAATGTGACCATCTAAAGCTCAGTCATGTTCTAGTAAAGGCTGGGCACAAGGAGTTGTTGTTCACAGTACGGGAGTGTAATAAGTTGAAGCAGATGGTGGACATCCTGAAGCCATTTGGAGAAGCAACAGATATGACACAGGGGGTGAAGAGGGTCACAATCAGTTTGGTTGTTTCCTCGGTCCTGTCCCTGAATCACCACCTGGAGCAGCGGAAGCCTCAAGTCCATTCCCTGAGCGGCCTGGTCAGAAGTCTCCAGGCATGCCTGAACAAAAGATTTATTGGAATCTTCATCAATGTGAAAATGGCCAGGACACAAGATGGAATCACTGCCCCCTTTTCAGATCCAGCCTACCTCAAAGCACCTGCCTTGGATCCGGCTTTTTCTCTGATGTGGGTGGAGCACCATGTGCTGGTCAAGGAGGTGGCACAAAGAGTGAAAGAACTGATTCTGCAAGATGCTACAGGGACTGAGCAAGCTTGGCCTCTTGTTGATGAGGAAGAGCGAGAGGACCAAAGTCTTGGACAAGTAGAAGCGCTGTTTGCAGCATACTGTAAGAGGCAGAAGAAAGCTGTCGGGACCTCTCCAGCACTACAGCTAAGTCACTACCTTGACATATGCGAAGGACAGAATGCCCTCTTGTTCTGAGCAATGAACAGGAAGGCTCTTCCTTCACTGTCCCGAGTGGCCATCAGGGTCTTGGCAGTGCCGTCCTCCAGTGCTCCGGTGGAGCGTGTCTTCAGCCATGGTGGCATCATACTGCGGCCTGCACAAATGACTGACAGACTTTTATCGAATTTGGTCTTTTGCAAACGCAATGCATCATAGGGCGCTGAGATAAGAGAAAAATTGAAACTGTTTATGCATTACACACACACGTAGTCTCCATGTTCAGGTTTTATCTCCCATCTTTGGGATCTGTATTTTTTCTCAGACATTCAGGCCAGTGTTCAAATTGTAGGCCTACTTGAAGTTCAGTGTCAGTTGTTTTGATGTACCTTTTAATAAATGATTGGCAGGATTGTTTTAGGTGTCTAgagtatatctggagagagagagagcactacaaTATTTTTGTGTTGTCATATGTCTTTCTCATgtctacccatgtat

Function

NR:

description
PREDICTED: uncharacterized protein LOC106611372

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035296.1 True 2123 mRNA 0.46 3 43546033 43575350

Neighbor

gene id symbol gene type direction distance location
LOC110538899 LOC106567646 coding downstream 28251 42957437 ~ 43517782 (-)
tmem218 tmem218 coding downstream 1280246 42258650 ~ 42265787 (-)
LOC110537624 robo4 coding downstream 1292254 42225171 ~ 42253779 (-)
LOC110537621 msantd2 coding downstream 1654670 41884739 ~ 41891363 (-)
esama LOC106567655 coding downstream 1668888 41805076 ~ 41877145 (-)
LOC118937674 cssa04h11orf63 coding upstream 73746 43649096 ~ 43686262 (-)
hspa8 hspa8 coding upstream 150118 43725468 ~ 43731026 (-)
LOC118937902 NA coding upstream 151089 43726439 ~ 43726532 (-)
LOC118937903 NA coding upstream 151939 43727289 ~ 43727382 (-)
LOC118937905 NA coding upstream 152730 43728080 ~ 43728173 (-)
G1075256 NA non-coding downstream 93700 43451348 ~ 43452333 (-)
G1074918 NA non-coding downstream 611120 42927955 ~ 42934913 (-)
G1074908 NA non-coding downstream 627964 42913077 ~ 42918069 (-)
G1074536 NA non-coding downstream 1114483 42418795 ~ 42431550 (-)
G1073256 NA non-coding downstream 1138638 42407149 ~ 42407395 (-)
G1075412 NA non-coding upstream 98745 43674095 ~ 43674408 (-)
G1075479 NA non-coding upstream 144951 43720301 ~ 43720848 (-)
LOC110537637 LOC106567642 non-coding upstream 183079 43757940 ~ 43769513 (-)
G1075506 NA non-coding upstream 194831 43770181 ~ 43770510 (-)
G1075510 NA non-coding upstream 199225 43774575 ~ 43775191 (-)
G1074731 NA other downstream 832110 42704003 ~ 42713923 (-)
G1073009 NA other downstream 1483401 42045863 ~ 42062632 (-)
G1071725 NA other downstream 2506102 41038866 ~ 41039931 (-)
fkbp6 LOC106567715 other downstream 4208059 39336054 ~ 39343006 (-)
G1069456 LOC106567699 other downstream 4437071 39108300 ~ 39108962 (-)
G1075399 NA other upstream 85209 43660559 ~ 43660837 (-)
G1075509 NA other upstream 198714 43774064 ~ 43774425 (-)
G1076460 NA other upstream 879298 44454648 ~ 44455270 (-)
LOC110537661 LOC101073377 other upstream 971169 44546519 ~ 44601149 (-)
gria4b LOC106567580 other upstream 1558502 45133844 ~ 45296904 (-)

Expression


Co-expression Network