LOC118937674 (cssa04h11orf63)


Basic Information

Item Value
gene id LOC118937674
gene name cssa04h11orf63
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 43649096 ~ 43686262 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937618.1
TGAAATCAGCACACTGACAGGGacagttcaacaacaacaaagcttTCAACTTTTTCCTCAGCACAGCAGCACAAAATGGAAGGTAAGAAGAGACATGAGAATGGAAAGACTTATGTCAGGTTGAAGGATGAACACAGGAAACCCTCCCCAACAAAACCAGATGTTGGTTTAAGCCTGTGGGACTCCACTGAATCAGACACAGAGAGCTTGGTCCGGGAGAGGGCCTACCAGCATGAGCTTCAGAGGCGAATTGGTGGCGAGTCTGGCGACAAAAACATAACATAACCCCAAGAGGAAGATACAGACAGCTCATGTctgaaagaggaggatgaggaagaagaggaggagcaggatgaGGGGGAACATTCATGTCTATGATAGTCTCGAGGTATCAGCACTTGGGCAGGACAAAAAGAACGCAAGTCCGAGGCCCATTGAAATCCAGCAGCAGAGCAGAGACAAAGAGTTGTCCAGATTTCAGATACTACTGAGGAGATTACCATTGGTGGGAGCCAGGAGAAGGAAAGCCAAGAGGACAATTCAGACCCAGAGCTGAGGTGGCTCCAAAAAACCCAGCAACTCAAGGACAAGAAAATGAGACGACAGAAGCTGTATTCAAATGTGATCCGTGAGCAGAACAAGAAGATAAGTAGGATTACCTTTTGCCGGACGCCAAGAACCCATTGGGCAGTGACAACAAGGACAACATGGTTCCCAGAAGgaagGCCCTGGAGTATGCCAGGTGCATCCTGTGGCCCAAGGTGGCGCCCCTGCCTCAGcagaccaagaccagagagccaGAGTGGGCCCAGGAGGGCCCCAGGGGCCACACTCGCCTCCTGGAGGGCTTCGACATATCCCAGCTGGCCACACTGGAGGCCCTGAGGAAACGGCGAGAGCAGGAGAAACAGACCGTGGCCCACTTCAAGGTGGTGCACACCATCTGACACTACGCCGGCCCAGTTACTTTACAACACACTGGAGTCACGCAACAACAGGTTTCCCCTTACAGCTGACATGGCCATTTAACTTTTGGGGAAAGGCAGTATATGGACTATATATTAATATACCTTATTGAAGTTTGAATAATATGCAAATGTTTGTACACATTTCAGATAAATAATGCTCTTGCTATTGACAATGATTCCACAATTCCTTGAATATCTCTCTGCTAATATTCCTTACAATTGCTCATGAGTCATGACTTGAGTGCACATGACCTGAAAATGTTTAATACAGCTGCTCAAGTCAATTCAGGCATAACACATATGGTTTGTTGTTGTACAATACTACACATACAGTGTTAATAGTACAATACTATATACAATCTGAGAGAACATGTACACCTTCTAAAGCTTTGTGTAGGTTGTTTGATGACAAGGAATCGGCAACTGAGTACAAAGACCATGGCTAGACCATTGGTAGAGATCTAATGGTCAAATTGTTGTCATAATGACAAAGGACACTTATGGAAACACTAAAAACATGGtgctctccgccttttctcttttttttgtttgttttgatagCACTCGACATTGAAACATCCTTTGTAAATTCAACAATACATCATTAAATTGGAAAGCTTTTGGTACTGCGGGCTATATTGTCTCATTTTTGGGGGGTACTAGTCGGTAATTCACACGTTGGCATTTTATCCACATTTCCAATTTGCCCCCTTTCACCCTCTCACGCACCTGGTTGCTGCTGTTAATCTGAAATAATCTGCTCTTTTTGTTCTGTGCCTGATTATTTTCTCCCTGTATCCCCCAGTCTCTACTTCCAGATACAAATGAGTCAAACAAAGATGACCCTTTGAAGCCCACCTGATTAGGGCTCCGTAAACTAGTGATAATTTTCCCACCAATAAAACAAATCTCAAGCACCCCCCATTTCTTTAATAGAACCGTCAGATCATTATAAAAGAGCTATTTACTCCTATGTAatattttaatttgattatagTCTCTATTTAACCCATCATGGCGTCTTTGATGCACTGTGTTTTTAGTGTTTAAGCCTCAGATGCGTGGGGGTAATAATAAATACCGGACCTTTTGAATTAATGAGAAACACTGCCTATCCAGACCAACTCTCTTTGCATctttcccccccacccctcttttgCCATAGAAATCCAGTTAATTGAAGGAGTCTCTCACCACCACACATGAAGGGGGCTAAATTAGCATCCCTTTCTGCCGATTGGAATAGCCGGGGCAGACGCGCACGCTTTGATGTGAGGACAGCGCCTAAGTAGGCGGCAGGCCCCTGAAAATGAGCTGATGGCCCCACTATTAGGCCCAAATGCAGATGCATCCATGTGTTGCAAAACGCTTAATCTTTTAATTGATCACCTtccgcacagcctattctcttcAACGCTTTTTATTTTCTCTGTAAATCTGCATCACGTTTTGAAAACGACATGATTTGCTTTTCAAAGGGCGGGAGAGTGCTGTGTATCCTGTTTGGATGAGCCTGTTAATGTAAACCTTCTAAATTGATGGGGAGCTGCCTCCTGGTGCACATTTAAATGACTGAATAAATTAAATAATAGCTGGTATTGATGATTTTGgcctgtgtgcgtgtgagtgcgtacgtgtgtgtgtgggtatggtgtGTACACATGTGCATGCTTTTAAAGGCTAAGGCCCAGAAGGCTAAGGCCGGCTCTGACTGCaagtgtgggtatagatgtgggtacaCAGACCCGCTAGacactgcggcccctcatgatgagttcagatttttgtggccatcaaagttgcccatgcCTGCTATAGATGATCACAGTTCACTAATTGAGCTATGAACAATGACCATTGAAGTTCCATTACGTTCTGATCAAACCAATGTGTTCCCAGTGGTCCCCTGGCAGTGCTCTGGCCAGGTTCTCCATGATTAGGTTTTTGGTCTCAGGGATGACCTCTATGGATTGGAATCCACCCACTCACTCTTGTTACACTACTACTTTGGGTGTGCCAGGTCatctagaggttagagaggcggTGCAGCAACCGAAGGGTCGCCAGTTCAAATCCCAAGTCTGATAGGAAAATCTTGTGGCAAGTGGCATGCGGAAAGCCATTGCACACTTGAGCAAAGCACCTAACATAATCTGCTCCAGGGGCAGACCCTGGCATGCAACTCCTTGGTGTAGGTGTTTGTGCTTCTCTGGGGTTTGGGTTAAAAGGCAAATTGTCTGAAAAGAAAATGGATAAGAAAGTATGTTTCTACTAGAGGTGATACCTAAAGAAAAATGTAGCACTCATTGCCATAGCAGAAGAAATTGGTGTAGTTACTCAAATGTAaatcattatatttctatgtttacTCACCTGTAGGCCTAAAGGGTAGTGTTTGCATGCTATTAGTGATTATTATCTAAGGTGAGTATCTTCTAAGAATGTGTACAAACAACAAACCAATTCAATGGGCCAAAGGCCCTACTGATCCTTATCATATTCAGAGAAAATGAAAAATGGGTGTGTTACGAAGGAGTTACTTTCACCAAAACATGGACATTATTTTCAATATTGTGATTTAAAACTCCCAACAATTACTGTTGTGTTTTGATTAAAACATGCTATGTGTTATTACTGTAACATCTCTGTGTATCATTCATTATACAATGAAGCGCTATCAAATCCCTTAGCCTAATTTGTCCCAATCCTTTTCTGTTTAAGGTCCAACGCAGCcattttttaaaatctcaatatcaaatcctttctgggtaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937618.1 True 3741 mRNA 0.44 4 43649096 43686262

Neighbor

gene id symbol gene type direction distance location
LOC118937884 LOC106611372 coding downstream 73746 43546033 ~ 43575350 (-)
LOC110538899 LOC106567646 coding downstream 131314 42957437 ~ 43517782 (-)
tmem218 tmem218 coding downstream 1383309 42258650 ~ 42265787 (-)
LOC110537624 robo4 coding downstream 1395317 42225171 ~ 42253779 (-)
LOC110537621 msantd2 coding downstream 1757733 41884739 ~ 41891363 (-)
hspa8 hspa8 coding upstream 39206 43725468 ~ 43731026 (-)
LOC118937902 NA coding upstream 40177 43726439 ~ 43726532 (-)
LOC118937903 NA coding upstream 41027 43727289 ~ 43727382 (-)
LOC118937905 NA coding upstream 41818 43728080 ~ 43728173 (-)
LOC118937901 NA coding upstream 42497 43728759 ~ 43728852 (-)
G1075256 NA non-coding downstream 196763 43451348 ~ 43452333 (-)
G1074918 NA non-coding downstream 714183 42927955 ~ 42934913 (-)
G1074908 NA non-coding downstream 731027 42913077 ~ 42918069 (-)
G1074536 NA non-coding downstream 1217546 42418795 ~ 42431550 (-)
G1073256 NA non-coding downstream 1241701 42407149 ~ 42407395 (-)
G1075479 NA non-coding upstream 34039 43720301 ~ 43720848 (-)
LOC110537637 LOC106567642 non-coding upstream 72167 43757940 ~ 43769513 (-)
G1075506 NA non-coding upstream 83919 43770181 ~ 43770510 (-)
G1075510 NA non-coding upstream 88313 43774575 ~ 43775191 (-)
G1075513 NA non-coding upstream 94775 43781037 ~ 43781284 (-)
G1075335 NA other downstream 84856 43563785 ~ 43564240 (-)
G1074731 NA other downstream 935173 42704003 ~ 42713923 (-)
G1073009 NA other downstream 1586464 42045863 ~ 42062632 (-)
G1071725 NA other downstream 2609165 41038866 ~ 41039931 (-)
fkbp6 LOC106567715 other downstream 4311122 39336054 ~ 39343006 (-)
G1075509 NA other upstream 87802 43774064 ~ 43774425 (-)
G1076460 NA other upstream 768386 44454648 ~ 44455270 (-)
LOC110537661 LOC101073377 other upstream 860257 44546519 ~ 44601149 (-)
gria4b LOC106567580 other upstream 1447590 45133844 ~ 45296904 (-)
G1078323 LOC106567565 other upstream 2516342 46202604 ~ 46206088 (-)

Expression


Co-expression Network