LOC110537639 (zgc:101846)


Basic Information

Item Value
gene id LOC110537639
gene name zgc:101846
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 43825477 ~ 43826368 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623828.2
ATAATCCTCAACTGCATTACGTAAAGGCAGATAGAAAATTCGCTGTATAGCTCTGTTGGTATTTGGATTGATAGGTGACAATAGAATAATTAACATGTCTGGTAGAGGCAAAACTGGAGGAAAGGCCAGAGCGAAGGCAAAGTCCCGTTCATCCCGCGCCGGCCTTCAGTTCCCCGTAGGACGTGTCCACAGGTTACTGCGCAAAGGCAACTATGCCGAGCGTGTCGGTGCCGGAGCTCCTGTCTATTTGGCTGCTGTGCTGGAATACCTAACGGCTGAGATCCTCGAGTTGGCTGGCAACGCTGCAAGGGATAATAAGAAGACCAGGATCATCCCTCGCCACCTTCAGCTGGCTGTCCGCAACGACGAGGAACTCAACAAGCTTTTAGGTGGTGTCACCATCGCGCAAGGAGGAGTATTGCCTAATATTCAGGCGGTcctcctacccaagaagactgaaaAACCAGCAAAGAGCAAGTAACCAGCTAGCTACAGATCACAAAAAAAACCTGAGCTCCGTTAAGAGACACCCACTTCTGTATAAAGAGCCTCATTTTCAAATTAATGACAGCGCAACCCGATACTGGATGCTTGCAGAAGGACAATGCTTCATGTTATTGGTTTCCACGATGCGCAGGCACCGTCATTGGACTATTCATATACATGTATGGACATTTTCTTAGATCATAAACCACATTTGACACGGTCTCTTGGATATGTGCTATAAATGGTGGTTCATTTGAGGGTGGGGTGAATAACGCAGagattattgtttttatttagtaGTGCTGTATCAACACATTTTGTGCTAAACAAAGTGATGTCATGTCTATTTGACAGAAATGGTTGATTTCAATAAATGTTCTGTACTGATACTGGGAACGCGCACAAA

Function

NR:

description
histone H2A

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11251 H2A; histone H2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623828.2 True 892 mRNA 0.45 1 43825477 43826368

Neighbor

gene id symbol gene type direction distance location
LOC110537637 LOC106567642 coding downstream 55964 43757940 ~ 43769513 (-)
hspa8 hspa8 coding downstream 94451 43725468 ~ 43731026 (-)
LOC118937901 NA coding downstream 96625 43728759 ~ 43728852 (-)
LOC118937905 NA coding downstream 97304 43728080 ~ 43728173 (-)
LOC118937903 NA coding downstream 98095 43727289 ~ 43727382 (-)
LOC110537640 LOC106567637 coding upstream 14476 43840844 ~ 43863956 (-)
LOC110537642 LOC106567634 coding upstream 94526 43920894 ~ 43945854 (-)
LOC110537647 LOC106567631 coding upstream 280266 44106634 ~ 44109916 (-)
LOC110537649 LOC106567630 coding upstream 300558 44126926 ~ 44135806 (-)
LOC110537650 LOC106567629 coding upstream 334558 44160926 ~ 44169528 (-)
G1075427 LOC107691633 non-coding downstream 30766 43794115 ~ 43794711 (-)
G1075516 NA non-coding downstream 40190 43785056 ~ 43785287 (-)
G1075513 NA non-coding downstream 44193 43781037 ~ 43781284 (-)
G1075510 NA non-coding downstream 50286 43774575 ~ 43775191 (-)
G1075506 NA non-coding downstream 54967 43770181 ~ 43770510 (-)
G1075528 NA non-coding upstream 375 43826743 ~ 43826969 (-)
G1075535 NA non-coding upstream 12024 43838392 ~ 43838618 (-)
G1075536 NA non-coding upstream 12603 43838971 ~ 43839173 (-)
G1075538 NA non-coding upstream 38501 43864869 ~ 43865070 (-)
G1075539 vps11 non-coding upstream 40023 43866391 ~ 43867024 (-)
G1075509 NA other downstream 51052 43774064 ~ 43774425 (-)
G1075399 NA other downstream 164640 43660559 ~ 43660837 (-)
G1075335 NA other downstream 261237 43563785 ~ 43564240 (-)
G1074731 NA other downstream 1111554 42704003 ~ 42713923 (-)
G1073009 NA other downstream 1762845 42045863 ~ 42062632 (-)
G1076460 NA other upstream 628280 44454648 ~ 44455270 (-)
LOC110537661 LOC101073377 other upstream 720151 44546519 ~ 44601149 (-)
gria4b LOC106567580 other upstream 1307484 45133844 ~ 45296904 (-)
G1078323 LOC106567565 other upstream 2376236 46202604 ~ 46206088 (-)
G1078783 NA other upstream 2990075 46816443 ~ 46817065 (-)

Expression


Co-expression Network